Lactuca sativa (garden lettuce): 111878995
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Entry
111878995 CDS
T05352
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03013
Nucleocytoplasmic transport
lsv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111878995
03015 mRNA surveillance pathway
111878995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111878995
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111878995
mRNA cycle factors
P-body specific factors
111878995
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
111878995
NCBI-ProteinID:
XP_023731231
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All DBs
Position
9:complement(220351634..220355679)
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AA seq
467 aa
AA seq
DB search
MKGPLDRTKVVLRHLPHTISQSALMEQIDARFSGRYNWFSFRSGKQSLKCQSYSRAYIDF
KRPEDVIEFAEFYDGHVFVNEKGTQFKTIVEYAPSQRVPKQWSKKDGREGTIGKDPEYLE
FLESVSKPVENLPSAEIQLERKEAERAGAAKEAPIVTPLMDFVRQKRAAKGGPRQRSLPN
GKLMRRNGASSSSSNSTVVKRGSEKRSSTMYVLREGGKSTNGKEKSTYVKRAERQASEKS
PSSSTQSGSVVLDEEKGSFGASDTGKKKILLLKGKEKEIPNVTTGVTPQQKLLYGSGGGS
RQNQRQEASGRIIRSILLKDSRQHQSEQNQSLNQDKDRRPPRPQNVGPLSKDSNGLQDDK
LQDGFYGEKMDKRSRNKEKPDRGVWTPLRSHASDESLSSSTSQSTQLLPDSAEGSSYKHG
GNRRTSSHNANKDADVFSNSNEGKPPKRGVSSGYEKRVWVQKPSSGS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaagggtccgttagatcggacgaaagttgtgcttcggcacttgccgcatacgatatcc
cagtcggcgctcatggagcaaattgacgcccgtttttccggtcgctataattggttcagt
ttccgttccggaaagcaaagcctgaagtgtcaatcatattctagagcctatattgacttt
aagaggccagaggatgtcattgagtttgcagagttctatgatgggcatgtttttgttaac
gagaagggtacccaatttaaaacaatagttgagtatgcaccttcacagcgtgttccaaag
caatggtctaaaaaggatggtcgtgaagggaccatagggaaagatcctgaatatcttgaa
ttccttgaatctgtttcaaagcctgttgagaatcttccaagtgcagagatacaattggag
agaaaggaagctgaacgagctggtgctgctaaagaggctcctatagtcacaccattaatg
gattttgttcgccagaaaagagccgccaagggtggaccccggcagaggtctttgcctaat
gggaagttaatgagaaggaatggtgcatcatcttcaagttcaaattctactgtagtgaaa
cgtggttctgaaaagagaagttctaccatgtatgtcctaagggaaggtggaaagagcaca
aatgggaaagaaaagtcaacttatgtcaaacgagctgaacgtcaggcttctgaaaagtct
cctagttcatccactcaatctggaagtgtagtactggatgaagaaaagggttcctttgga
gcctctgatactgggaagaagaaaattttgctgttaaaaggaaaagaaaaggaaattccc
aatgtcaccactggcgtgacaccccagcagaagcttttatatggttctggtggtggcagc
agacagaatcaacgacaggaggcgagtggaaggatcataagaagcatacttctgaaggat
tcaagacaacatcaatccgaacagaatcagagtctgaatcaagataaggatagaagacca
cctaggccacaaaatgtgggcccactttcaaaggattcaaatggtttacaagatgataag
cttcaagatggattttatggtgaaaaaatggataaaaggtctaggaataaagagaaacca
gatcgtggtgtttggactccattaaggtcacatgcgagtgatgagtctttgtcatcttcc
acttctcaatccacacaactgctaccggatagtgcagaaggctcctcctataaacacggt
ggtaatcgccggacatcttcacataatgctaataaggacgcagatgtcttttcaaattca
aacgagggaaaacctccaaaaagaggtgtttcgtctggctatgagaagcgagtgtgggtt
caaaagccaagttctggctcttag
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