Lactuca sativa (garden lettuce): 111883388
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Entry
111883388 CDS
T05352
Name
(RefSeq) DNA repair protein RAD4
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
111883388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsv03400
]
111883388
DNA repair and recombination proteins [BR:
lsv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
111883388
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Transglut_core
Motif
Other DBs
NCBI-GeneID:
111883388
NCBI-ProteinID:
XP_023735483
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Position
2:155831943..155836978
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AA seq
882 aa
AA seq
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MKTRNQAKRKRQPYGQDDTNKEAGDDPKANGTLANITPQKGINKFQKRVASRGLKGKDIN
FDSASKLESLSKGKEKQVKVNIGSQNIPKAELENSAPLNTDDGKSSMQVKSESEDVMADS
DWEDGPNSNLNSEIDHQNHISNNISIEIDASPGDNTAKRKPVRRASAEEKEVAELVHRTH
LLCLLARGRVIDSACNDPLIQASLLSLLPTKFLKLSEATNLTVDALTPLVNWFHSSFRVR
SSSSDKSFHSALATALGTQEGTPEEVAALSVAMFRSLNLLTRFVSILDAASLKPDADKSD
DMSPRRKTGTGVFQSSTIMVTRSNEPSTSSNKQFPPLDVDHIASIHNKQTPETSSKPSCQ
SQSQSQTISPVDDQSNERRVDLGSKRKGDLEFEMQMQMALSATATKTSEISNTDSFKKLK
KIKCEEDPSSSSSSSISTAIGSRKVGAPLYWAEVYLNGKWVHVDTINATIDGENKVEALV
AACKTSLRYVVAFNGQGAKDVTRRYCAKWYKIASHRVNSTWWDAVLAPLKDLESKTTQGI
GLSDNLRNERASLEDMELETKALTEPLPTNQQAYRSHHLYAIERWLTKYQILHPKGPILG
FCSGHPVYPRASVQILHTKEKWLREGLQLKVNELPVKVLERSVKVNKGKVTDEDDCVGPT
GTIHLYGKWQTEPLCLPHAQNGIVPKNERGQVDVWSEKCLPPGTVHLGFPRIFNIAKKLN
VDYAPAMVGFEFKNGRSYPLYNGIVVCSEFKDMILDAYGEEEERRGEEERRKSEAKALSR
WYQLLSSIVTRQRLNNRYAKPEEVSSCHKNDVGKTNDSFDHCSTSVNTQDVQKLVSLQEN
DDVAQTFEDDHEHVFVNGSLDVENSVRKKSCRCGFSIEVEEM
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccagaaatcaagccaagcgaaagcgtcaaccatatggtcaagatgacacgaat
aaggaagctggagatgatccaaaagcaaatggcactcttgctaatattacaccacagaag
ggtatcaacaagtttcagaaacgagttgcttcacgtgggttgaaaggaaaagatattaat
tttgattctgcaagtaagttggaaagtttgtcaaagggaaaggaaaaacaagtaaaagtc
aacattggttcacaaaatataccaaaggccgaattggagaattcagcacctttgaacact
gatgatggaaaaagttctatgcaagttaagtctgaatcagaagatgtaatggctgattca
gattgggaagatggacctaattcaaatttaaattctgaaattgatcatcaaaatcatata
agcaataatatttctattgaaattgatgcatcacctggtgataatactgctaaacggaag
cctgtacgtcgagcttctgctgaggaaaaggaagttgctgagcttgtgcataggacacat
ttactctgtttacttgcacgtggacgtgtgattgatagtgcttgcaatgatcctctcatt
caggcttccttattatcacttttgccaacaaagtttctgaagttatcagaagctacaaat
cttacagtagatgctttgactcctttagtcaactggttccatagtagctttcgtgttaga
agttcaagcagtgacaaatccttccattcagctttagccactgctcttggaacccaggag
gggactccagaagaggtagctgctttatctgtggcaatgttcagatcattgaatctttta
acacgttttgtatccattttagacgccgcatctttgaaaccagatgctgataaatctgat
gacatgtcaccccgaagaaaaactggtacaggggtatttcagtcctctacaatcatggtg
actcggtcaaacgaaccctctacatcttccaataaacaatttccacctcttgatgttgac
cacattgcttctattcacaacaagcaaacacctgaaacttcttcaaaaccttcatgccaa
agtcaaagtcaaagtcaaaccatctctcccgttgatgatcagtcaaatgagagaagggtt
gacttagggtcaaagagaaaaggggatcttgaatttgaaatgcaaatgcaaatggctctt
tctgcaactgcaactaaaacatcagaaatatcaaataccgattctttcaaaaaattgaaa
aaaataaaatgtgaagaagatccatcatcatcatcatcatcatcaatctctactgcaatt
ggatcaagaaaagtaggagctccattgtattgggcagaagtttatcttaatggaaaatgg
gttcatgttgacaccataaatgccaccattgatggagaaaataaagttgaagctttagtt
gctgcatgtaaaacttcattaagatatgtggttgctttcaatggtcaaggagctaaagat
gtcactcgcaggtattgtgcaaaatggtacaagatagcatcacatcgagttaattccact
tggtgggatgcagttttggcaccattaaaagacctagagtctaaaacaacccaaggcatt
ggattgtctgataatttgagaaacgaacgtgcatctcttgaggatatggagctggagacc
aaggcgttgactgagcctcttccaactaatcaacaagcgtatagaagtcatcatttatat
gcaattgaaagatggcttacaaagtaccaaattcttcacccaaaaggcccgattttaggg
ttttgttctggtcatcctgtttaccctagagcttctgtccaaatcctgcatacaaaagaa
aaatggctacgtgaggggcttcagttaaaagtcaacgagcttccagtcaaagtcttggaa
cgttctgtaaaagtcaacaaagggaaagttacagatgaagatgattgtgtaggccccact
gggaccattcatctttatggaaaatggcaaacagagcctctatgtttgcctcatgcacaa
aatgggattgttccaaagaatgaacgtgggcaagtggatgtgtggtctgagaagtgtctt
cccccaggaactgttcatttagggtttccaaggatctttaatattgccaagaagctaaat
gtcgattatgcccctgcgatggttggatttgaattcaagaatggacgatcttaccctttg
tataatgggattgtcgtgtgttctgagttcaaggatatgattctagatgcatatggagaa
gaagaagagaggaggggggaagaggagagaagaaagagtgaagcaaaagctttatcaaga
tggtatcaacttctttcatccattgtaactagacaaagattgaacaatcgatatgcaaaa
ccagaagaagtctcctcatgtcacaaaaatgatgttggaaaaacaaatgattcatttgat
cattgttcaactagtgttaatacacaagatgtgcaaaaattagtatcacttcaagaaaat
gatgatgtggcacaaacatttgaagatgatcatgagcatgtgtttgtgaatggaagtttg
gatgttgagaattctgtgaggaaaaagagttgtcgatgtgggttttcgattgaggttgaa
gagatgtag
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