Lactuca sativa (garden lettuce): 111904112
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Entry
111904112 CDS
T05352
Name
(RefSeq) uncharacterized protein LOC111904112
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111904112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111904112
Messenger RNA biogenesis [BR:
lsv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111904112
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111904112
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
WEF-hand
Motif
Other DBs
NCBI-GeneID:
111904112
NCBI-ProteinID:
XP_023755659
LinkDB
All DBs
Position
7:complement(12164744..12178954)
Genome browser
AA seq
2417 aa
AA seq
DB search
MIPLAQRFSTEIRLLFESLNESNSDSVLRELSQYVDYGLEGSILLLETCFDHFNVYERDL
KSSHLEPVVASLFRKLLEKPQFSTVFQVSVRPTAITEEFLDNLSVALQLSSYEKLGFGLS
LTDSENNDIRIAGRNFCTRQIEELCATTSLHNADYVQDILLFLNKSEALSKHVDSFMQLL
SLVQFDKDSEFIVAPLLSDELQESKFMRKLDFLNDGTDSEFEAILAEMEKHMNMADLMKE
LGYNSTSDVSLCKDLLSSFSPLNEITVAMILGTIVRSDSSLQDQENAFSTFCSALGRGSL
PDMSLLSSWNTEVLIESIKQLAPGINWTTVIENLDHEGFYIPDEAAFSLLISCYRLASQD
PFPLSAVCGNVWKNTEGQLSFLKYAVSVPPEVFTFAHCERQVAYVDAVSTPKFQSGYANH
AWLCLDLLEVLCQLAERGLAKSVRLLLEYPLKHCPEVLLVGMAHVNTPYNVLQNEVSLAV
LPVILKDPSVGGILLHLWHVNRSFFLRALSDALNMDQDNIHRVLDLCQEIKIISPVLDMV
PMSLGIKLAALASRKELIDLEKWLSANLSTYRDAFFEECLRFLKEVEFGVQESSNRLHSP
GNIWTIYAETASVFFKVLQSHTGLLTSNQLIKEMERLYLKSPNNSSRMKNNGGQESSTSE
VYGDDVEAEANSYFQQMFSGQLTIDAMIQMLARFKESSDKREQQIFECMIANLFEEYKFF
NRYPDRQLKLAAIVFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKFV
DRLIEWPQYCQHILQISHLRATHSELVAFIERALARISSGHLDSDAGHNPASDQHHNSIP
QPNIEMAAGSSFSLIGSSGAQLGSQMSSPIQLQQRNQSYLEERHRASVTSSNYMKPNLPT
TGQMSVATANDPVSIQKPPSVVSSSAALASSPAFVRPSRSVTSARFGSALNIETLVAAAE
RRETPIEAPPSETQDKISFIINNLSAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIE
PNFHDLYLKFLEKASSRPLTREIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKI
TIGRNHVLRAKEIDPKGLIIEAYEKGLMIAVIPFTSKILEACQNSLAYTPPNPWTMGILG
LLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVSPSSLLMDKVREVEGNPDFSNKDVGST
QQQPMVGEVKSSMISTLNQVDLPVEVASSSHPGGHSRILSQYAAPLHLPSATLSEDEKMA
ALGLSDQLPSAQGLLQAQLPFSVGQIPASNIDQQVIVNPKLQALGLHMHFQSVLPMSMDR
AIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKE
PLRGSISSQLRNNIGTTVNITSELLEHAVQLVTNDNLDLGCALIEQAATEKAVQTIDGEL
APQLAIRRKHREGVGPAFFDANLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQ
NQSNQSSNAVPLGPSAPPGSGALHRGYGSASGNLNPGIFSSSLGNSGMNAVAHSLDSEDM
EPSSVKLLSGSSGHAGMAGGIGPHNFENEAVLSSFSSVSAPELHIPDSSNISKESGVYAQ
PLPSPSASDRVISTTSEPSLTTGDALDKYRIISEKLESLIANDAKEAEVQSVIGEVPVVI
LRCISRDEAALAVAQKVFKGLYENAANTAHVGAHLAMLASIRDASKLVVKELTSWVIYSD
EDRKFNKDITIGLIRRELLNLAEYNVHMAKLLDAGKNKVATEFAISLIQTLVANDARVIS
ELHNLVDALAKLATRPDAPEALQQLVEVARNPSASSSSGLPAGKDDFVRQQKDKKVASHL
VAGRDEMSALESSEPDPAGFHDQVSLLFAEWYRIYEHPNDQMSARFVLQLQQNGLLKADD
TSDRFFRRLLEIAVSHCISSEVINSSPVQAPQQAQTLSFLAIDMYASLIFSILKFSSVDH
GVSKLSLLSKVLAVTVRFIQKDAEEKKTSFNPRPYFRLFIDWLLDLSTLDPVFEGANFQV
LTALATSFHALQPLKVPAFSFVWLELVSHRSFMPKLLSGNAQKGWPYFQRLLVDLFQFME
PFLRNAELGEPVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAF
PRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKTKQMKNDVDEYLKTRPQGTSFLS
ELKQKLLLSPSEAARAGTRYNVPLMNSLVLYVGMQAIQQLQARTPHGQSMASNASLAIFL
VGAALDIFQTLILELETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQ
ITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGP
KPVDDNVVAGGISDTMH
NT seq
7254 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgcaaagattctcaactgaaattcggctgttgttcgagagtttgaac
gaatccaattccgactccgttcttcgcgaactctctcagtatgttgattatggattggag
ggaagcattctgcttctagagacatgctttgaccacttcaatgtttatgaaagggacttg
aagagtagtcatctggaaccagtagttgcttcactttttagaaagttacttgaaaagccg
cagtttagtaccgtattccaagtgtcagttaggcctacagcaatcactgaagaatttttg
gataatctatccgttgcactacagttatcatcatatgagaaacttggatttggtctttcc
ttgacagattcggaaaataatgacatcagaatagctggaaggaacttttgtacgcgacaa
attgaggaattatgtgctaccacctccttgcataatgctgactatgttcaagacatattg
ctgtttcttaataaatccgaagcactttctaaacatgtggattcttttatgcaattgtta
tccttggttcagtttgataaggattcagagtttatcgtggcacctctcctttctgatgag
ctacaagaatccaagtttatgaggaaactggattttctcaatgatggcactgacagtgaa
ttcgaagctatcctagcagaaatggagaagcatatgaacatggctgatttgatgaaagaa
ttgggctacaattccacatcagatgtatcactttgcaaggatttgttatcatcattctca
cccctcaatgaaatcactgttgctatgatactagggacaatagtccgctctgattccagt
cttcaggaccaagaaaatgcattttcaacattttgttctgctcttggtagagggagtctt
cctgatatgtccttgttgagttcttggaacactgaagtccttatagaatcaatcaagcag
cttgcgcctggaatcaactggaccactgtaattgagaaccttgatcacgagggtttctat
atccctgatgaagcagcattttcactattgatttcctgctatagactagcatcccaggat
ccgtttccattatctgctgtttgtggcaatgtttggaaaaacaccgaggggcagttgtct
tttttgaagtatgctgtttctgtcccacctgaagtattcacatttgcacactgtgaaaga
caagtggcatatgttgatgcagtcagtactcccaagtttcaatctgggtatgcaaatcat
gcatggttatgccttgatcttttggaggttttatgccagctggctgaaagaggccttgca
aagtctgttcgattgctgcttgaataccctcttaagcattgccctgaagtgttattagtt
gggatggcccatgttaatacaccatataatgtcctgcaaaatgaagtttctttggctgtt
cttcctgtgatacttaaagacccttctgttggtggcattttgctccatctttggcacgtt
aaccgttcctttttcttgagagctttaagcgatgcactcaacatggatcaagataatata
cacagagtcttggatttatgccaggagataaagattatatctcccgtattggatatggta
cctatgtctttgggtattaagctggctgccctggcttctagaaaagaactcatagatctg
gaaaagtggttgagtgcaaatttaagtacttacagggatgctttctttgaggaatgcctc
agattcctgaaggaggtggagtttggtgttcaggaatcttccaatcggttgcatagccct
ggtaacatttggactatttatgcagagacagcttctgtgttctttaaggttcttcaatcg
catacaggcttgcttacttctaaccaacttattaaagaaatggaaagattatatctgaag
tctccaaacaacagttcaaggatgaagaacaatggtggtcaagagtcgtcaacatctgaa
gtatatggagatgatgtagaggcagaagccaattcttatttccaacaaatgttctctggt
cagctgactattgatgcaatgatccaaatgcttgcccgatttaaagaatcttctgataaa
agggaacaacaaatatttgagtgcatgattgcaaacttgtttgaagagtacaagtttttc
aacagataccctgatagacaacttaagcttgctgctattgtctttggattgcttattaag
aatcaacttgtgacccatctgacacttggaattgcattacgtgctgttttggatgcattg
cgcaaacctgcagattccaaaatgtttgtttttggtacaaaggctttggagaagtttgtg
gatcgactgattgagtggcctcaatactgccaacatatcttgcagatatcacatctgcgt
gctactcattcagagcttgttgctttcattgaaagggcgcttgcaagaatttcatcaggc
cacctggattcagatgcaggacacaatcctgcttctgaccaacaccataattctatccca
caaccaaacattgagatggcggcgggatcatctttctctttgattggatctagtggtgca
caacttggttctcaaatgtcttctccaatacaacttcaacagaggaatcagagttattta
gaagagagacacagagcctctgtaacttcatccaattatatgaagccaaacttacctacc
acaggacaaatgtcagttgctacagcaaacgatcctgttagtatccagaagccaccgagt
gtagttagttcttcagcagcattggcttcatctcctgcttttgttcgtccatctagatct
gttacttcagcaagatttggttctgcattaaatatcgaaacacttgttgccgctgctgaa
cgcagagaaacacccatagaggccccaccatctgaaactcaagacaaaatctcatttatc
atcaataatttatcggctgccaatattgaagctaaagcaaaggaattcacagaaattttg
aaagaacagtactatccttggtttgcacagtatatggtcatgaaaagagcaagtatcgaa
ccaaattttcatgacttgtacttgaagttccttgagaaagccagctcaagacctctaacc
agagagattgttcaagctacctatgaaaattgcaaggttcttttaggatctgaactcata
aaatccagttctgaagagcgttctttgctgaagaatcttggaggctggttaggaaagatt
acaattggcagaaaccatgttttgcgtgctaaagaaatcgatccaaagggcttaattatt
gaggcgtatgagaagggtttgatgattgcagtgattccatttacctccaagatcttagag
gcatgccaaaatagtctagcgtatacacctcctaatccttggaccatgggaattcttgga
ttacttgctgaaatttatgcaatgccgaatctcaaaatgaatctcaagtttgaaattgag
gttttgttcaagaatctcaatgttgatttaaaggaagtaagcccatcctcccttcttatg
gacaaagtgagagaagttgaaggaaaccctgatttttccaacaaagatgttgggtcaact
caacaacaaccaatggttggagaagttaaatccagcatgatttctactctaaatcaagtc
gatttaccggttgaagttgccagctcatcacatccgggtggtcattcgcgtattctatct
cagtatgctgctcctctccatcttccttctgcaactttaagtgaagatgaaaagatggca
gctttaggcttgtctgatcagcttccatctgctcaaggacttctacaagcacaattgcca
ttttcagttggtcagataccagcatcaaatatcgaccaacaagttattgttaatcctaag
ctccaagctctgggcttgcatatgcactttcagagcgtgcttccaatgtctatggatcga
gctatcaaagaaatagtttccagcattgtgcagcgtagcgtctctatagcaactcaaaca
acaaaggaacttgtcttaaaggactatgctatggagtctgatgagagccggatacacagt
gcagctcatttaatggttgcaagtttggctggaagtttagcccatgtgacatgcaaggaa
cctcttcgtggttcgatatcaagtcagctgagaaacaatattgggactactgtaaatatc
accagtgaactgcttgaacatgcagttcagcttgttactaatgacaacctcgacttggga
tgtgctttgattgaacaggctgcaacagaaaaggctgtacaaaccatagatggtgaactt
gcaccacaacttgcgataagaaggaaacatagagaaggggtgggcccagccttttttgat
gcaaacctgtatacacaaggtcatgttggtgttcttccggaagctttgcgtcctaaacct
ggtcgattgtcccattcccaacagcgagtttatgaggattttgttcgattaccatggcaa
aatcagtccaatcaaagctcaaacgctgtacctcttggtccttctgctcctcctgggagt
ggtgcactacatcgtggatatggctcagcctcagggaatctaaaccctggcatcttctca
tctagtcttggaaactctggtatgaatgcagttgcacactccttggattcagaagatatg
gagcctagttctgtcaaactcctcagtggttcctcggggcatgctgggatggctggtgga
attggtccacataattttgagaatgaagctgttctttcttcattttcgtcagtgtcagct
cctgaattgcacataccagattcttccaacatttccaaagaatctggagtctatgcgcag
cctttaccttcgccttcagcttcagatcgtgtcataagtaccacttctgaaccttcattg
actactggtgatgcattggataaataccggattatctcagaaaagctggaatctctcata
gcaaatgatgctaaagaagctgaagttcagtctgttatcggcgaggttcctgtggtcatt
cttagatgcattagtcgcgatgaggctgcattggctgtggctcagaaggtcttcaaaggc
ttgtatgaaaatgcagcaaacacagcacatgttggtgctcatcttgccatgttagcttca
atccgagatgctagcaagcttgtggtgaaggaactgaccagttgggtgatatattcagat
gaagataggaagttcaacaaagatattactattggcttaattcgcagagagttgttgaac
cttgctgaatataatgttcatatggcaaagcttcttgatgctggaaagaacaaggtggca
acagagtttgcaatttctctcatccaaacattggttgctaatgatgcaagagtgatatct
gaacttcataatcttgtggatgcgttggcgaagcttgcaacaaggcctgatgctcctgag
gcgctgcaacaacttgtggaagttgctaggaacccatcagcttcttcctcctctggactt
cctgctgggaaggatgattttgtcagacagcaaaaagacaaaaaggtggctagtcatctg
gtagcaggcagggatgaaatgagtgctttggaatcttctgaacccgatcctgctggtttc
catgatcaggtttccctgttatttgccgagtggtatcggatatatgaacaccctaatgat
cagatgtctgctcggtttgttctacaacttcagcaaaatgggttgctaaaagcagacgat
acatctgaccgcttctttcgccgtctcttggaaattgctgtatcacactgtatctcttct
gaggtgatcaattctagccctgtccaagctcctcaacaagcacagaccttatctttcctt
gccattgatatgtacgcatcactcatcttttcgatactcaagttctcctctgttgaccat
ggagtaagcaagctgtctcttctgtcaaaggtgttagccgtgactgtgagattcattcaa
aaggatgcagaggagaagaaaacttcattcaaccccagaccgtatttcaggttattcatt
gattggctgcttgacctcagtacccttgatccggtttttgaaggtgcaaactttcaggtt
ctgacagctctagcaacctccttccatgccctgcagcctctcaaagttcctgcattcagc
tttgtatggcttgagctagtgagtcacagaagcttcatgccaaaactactgagtggaaac
gctcaaaagggttggccatatttccaacgtttactggttgacttattccagttcatggaa
cctttcttgaggaatgctgaacttggcgagccggttcgttttctatacaagggcacactg
agagttctgttggtgttacttcatgatttcccagagtttctctgtgattatcatttcagt
ttctgtgatatcattcctccaagttgcattcagatgagaaatatagtgctcagtgctttc
cctcgcaacatgagactaccagacccttcaactcccaacttaaagattgatctgctagct
gagatcagtcagtcacctcgcattctgtcggaagttgatgcagctctgaaaaccaagcaa
atgaaaaatgacgtggatgagtatctaaagacaaggccacaagggacttcatttctgtct
gaactaaagcagaaactgcttctttcaccaagtgaggcagcaagggcaggaacacgatac
aatgtgccattaatgaattcccttgttctttatgttggaatgcaggcaatccagcagttg
caggcaagaacgccacacggacaatcgatggcgagcaatgcttcgctggccatcttcttg
gtgggggccgctctggacatctttcaaacattgatattggagcttgagacagaagggcgc
tacctctttttgaatgcagttgcaaatcagttgagatatcccaacaaccatacgcattac
ttctccttcatccttctctacttgttctccgaatcaaatcaggaggcaatccaggaacag
ataacgagagttctgttggagcggttgatagttaacaggccacacccttgggggcttctg
atcaccttcattgagcttatcaagaatccacgatacaacttttggagccgatctttcact
aggtgtgcaccggagattgagaagctatttgaatcggtgtcgagatcatgtggtgggccg
aaaccggtggatgataatgtggttgctggagggatatctgataccatgcactag
DBGET
integrated database retrieval system
