Lactuca sativa (garden lettuce): 111908062
Help
Entry
111908062 CDS
T05352
Name
(RefSeq) probable starch synthase 4, chloroplastic/amyloplastic isoform X1
KO
K00703
starch synthase [EC:
2.4.1.21
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv00500
Starch and sucrose metabolism
lsv01100
Metabolic pathways
lsv01110
Biosynthesis of secondary metabolites
Module
lsv_M00854
Glycogen biosynthesis, glucose-1P => glycogen/starch
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00500 Starch and sucrose metabolism
111908062
09180 Brite Hierarchies
09181 Protein families: metabolism
01003 Glycosyltransferases [BR:
lsv01003
]
111908062
Enzymes [BR:
lsv01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.1 Hexosyltransferases
2.4.1.21 starch synthase (glycosyl-transferring)
111908062
Glycosyltransferases [BR:
lsv01003
]
Polysaccharide
Storage polysaccharide
111908062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_5
Glycos_transf_1
Glyco_trans_1_4
Glyco_transf_4
Glyco_trans_4_4
DUF5713
Motif
Other DBs
NCBI-GeneID:
111908062
NCBI-ProteinID:
XP_023759663
LinkDB
All DBs
Position
7:complement(49528793..49534645)
Genome browser
AA seq
993 aa
AA seq
DB search
MAGKLSTCFLSHQWSCCTVLDCKHLNVRFYSLPSPRFATVSCKIRQRNSSLPPRRPQAKK
IIPAQIPQNDNLMTPGNENSDSENEDDFSHQSTSDEVVAIQRFDDKNSSSKLIPSIGADK
VGEVTTVNLQDVIGMIRNAEKNIHILNQARINAIEDLETILSEKEVLQREINNLEMRLAE
TDARIRVAAQDKIHVELLQDHLEKLQSEMSNNGAHDAVVLRSPDRQTRALSEELNSLRNE
NMSLQNDLNTLKEQLRDVKRTDERVEMLENERTVLELSIKELEYKLTVSQQDGVQLSTLR
SECETLWNKVEHLQGLLDKSTSQADQAILVLQQNQELRKKVERLEESLEDANIYKLSSEK
LQQYNDLMQQKIKLLDERLERSDAEIHSYVQLYQDSVKEFQETLDNLKEESKKKASGKQV
DMPWEFWSRLLLMFDAWFLEKKIHGDEAKLLREMTWKKDGRIHDVYIECKEKNEREIIAA
FRRLTSSSSGSGLHVVHIAAEMAPVAKVGGLGDVLSALSKALQKKGHLVEIILPKYDCMQ
YESIQNLRVLDLAVESYFDGHLFKNKIWIGTVEGLPVYFIEPLHPAKFFWRGKTYGEPDD
LKRFSFFSRAALELLHQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGLNSARICFTCHNF
EYQGTASASEIASCGLDIHHLNRPDRMQDNSSHDRLNPVKGAIVFSNIVTTVSPTYAQEV
RTSQGGQGLHATLNAHSQKFVGILNGIDTDSWNPATDTYLSFQYNSSDLEGKSENKNALR
RHLGLSLSDSRRPLVGCITRLVPQKGVHLIRHAIYRALELGGQFVLLGSSPVPNIHREFE
EIAKKFQTHEHIRLILKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYGAIPVARK
TGGLNDSVFDVDDDTIPIQLRNGFTFVTPDEHAFNGAFDRAFKYYKNDSEGWEELMKKVM
NIDFSWDTSASQYEELYLQSVSKAKAARRAAAG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atggcggggaagctatcgacgtgttttttgagccatcaatggagctgttgtacagtgctt
gattgtaagcatttgaatgtgcggttttactctttgccttctcctcggtttgctacagtt
tcctgcaagatacgtcaacgtaactccagcttaccacctaggagaccacaagcaaagaaa
atcatccctgcacagattccccaaaatgataatctcatgacacctggcaatgaaaatagt
gattcagaaaatgaagatgacttttctcatcaatctacctctgatgaggttgtagcaatt
cagcgttttgatgataagaattcaagcagcaaactgatcccgtctattggtgcagataaa
gtgggcgaggttacaactgtaaatcttcaggatgtaataggaatgatacgtaatgcagag
aaaaatattcatatcctaaaccaagcccgaatcaatgcaattgaagatttggaaacaatt
cttagtgaaaaagaggtcttacaaagagaaatcaataatttggaaatgaggttagctgaa
actgatgccagaatcagagttgctgcacaagataagatacatgttgagcttttacaggat
catttagagaaacttcaatctgaaatgtctaataatggagcacatgatgctgttgttctt
cgatctcctgatcgacaaacccgtgctttaagtgaggagctgaattcattaagaaatgaa
aacatgtccctgcaaaatgacctaaatacccttaaagagcaacttagggatgtcaagaga
acagacgaacgtgttgaaatgcttgaaaatgaacgcactgttttggaattgtccataaag
gagttggaatacaagctcactgtttcccaacaagatggtgttcaactttcaactttaaga
tcagagtgtgagaccctttggaataaggtagagcatttgcaaggattacttgacaagtca
acaagtcaagcagatcaagctatcttagtactacaacaaaaccaggagcttcgaaagaaa
gttgaaagacttgaagagtctcttgaagatgccaacatttacaaattatcatcagaaaag
ctacaacaatataacgatctaatgcaacagaaaataaaactacttgatgaacgcctcgaa
agatcagatgcagaaatacattcctatgtacaattatatcaagattcagtgaaggagttt
caagaaacacttgacaatttaaaagaagaaagtaagaaaaaagcatcgggtaaacaagtg
gatatgccatgggaattttggagtcgtttattgcttatgtttgatgcttggtttcttgaa
aagaaaattcatggagatgaagctaagttgttaagggaaatgacatggaagaaagatgga
aggattcatgatgtttatatagaatgtaaggaaaagaatgagcgtgaaattattgctgct
tttcgcagattaacatcttcatcatccggttcaggattgcatgttgttcatattgctgct
gagatggctccagttgctaaggttggtggtctaggtgatgtgttgtctgctcttagtaaa
gcattacagaagaaaggacatcttgtagaaataattctccctaaatacgattgcatgcag
tatgaaagtatccaaaatttaagggttttagatttagctgtagagtcatattttgatggc
catttgttcaaaaataaaatctggattggtactgttgaagggcttcctgtttattttatc
gagcctcttcaccctgctaagtttttttggagaggaaaaacatatggtgaacctgatgat
ctgaagcggttttcattctttagcagagcagcacttgagctgctacatcaatctggaaaa
aaaccagatattatccattgccatgattggcagactgcttttgttgcacccctctactgg
gatctatatgcacccaaaggattaaattcagctcgaatatgtttcacatgtcataacttt
gagtatcaaggaactgcatctgcttcagagatagcatcttgtggtcttgacattcatcac
cttaatagaccagacagaatgcaggacaactcatcacacgacagactcaatcctgttaag
ggtgcaattgtgttctctaacattgtaacaacagtgtccccaacttatgcacaagaagtg
cgaacttcacagggaggacaagggcttcatgcaacacttaatgctcattctcaaaagttt
gtagggattctgaatggaatcgatactgattcatggaatcctgctactgacacctatctc
agtttccaatacaattccagtgatcttgaggggaaatctgagaataaaaatgccttaaga
agacaccttggactctctttatctgatagtaggaggccattggttggatgtataacaaga
ttagtcccacagaaaggtgtgcatctcatcaggcatgcaatatacagagcattggaattg
ggaggacaatttgtattgcttggttctagccctgtgccaaatatccatagggaattcgag
gaaattgcaaagaaatttcaaacccatgaacatattcgactgattctcaagtatgatgag
gctctttcccattctatatatgcagcatcagacatgttcatcatcccatcaatatttgag
ccatgtggcttgacacagatgatagccatgagatatggtgcaatccccgttgctagaaag
acaggtggtctaaatgacagtgtttttgatgttgatgatgatacgattccaatacaactc
agaaatggattcacattcgtaacacccgatgaacatgcgttcaatggtgcatttgacaga
gcgttcaaatactacaaaaatgatagtgaaggttgggaagagttgatgaaaaaagtgatg
aacatagacttcagttgggacacatcagcatcacaatatgaagaactttaccttcaatct
gtatccaaagcaaaagcagctcggcgtgcagctgctggctaa
DBGET
integrated database retrieval system
