Lactuca sativa (garden lettuce): 111914354
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Entry
111914354 CDS
T05352
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111914354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111914354
03016 Transfer RNA biogenesis [BR:
lsv03016
]
111914354
Enzymes [BR:
lsv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
111914354
Messenger RNA biogenesis [BR:
lsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
111914354
Transfer RNA biogenesis [BR:
lsv03016
]
Prokaryotic type
tRNA degradation factors
111914354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Herpes_pp85
Motif
Other DBs
NCBI-GeneID:
111914354
NCBI-ProteinID:
XP_023765877
LinkDB
All DBs
Position
3:complement(184221600..184230006)
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AA seq
991 aa
AA seq
DB search
MASVAITRKNHLVSSLLYSIRCRSSYFRRPITTSRLSFTTSTSTSPSPADTEIPVSRTKV
LEVFKEEFEIGSRLLTFETGKIARFANGAVVLGIDDTKVLSTVCSSKGDGVRDFLPLTVD
YQEKQFAQGVIPGTYMRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDG
KQDPDVMAANATSAALMLSDIPWGGPIGMIRVGRIDGHLVVNPTVDELNLSDLNLVYACT
KDKTLMLDVQASEISEKDLEAAFRFAHPEAVKFIAPQLRLAEKAGKQKKEYKLSLVSERT
MNKIRDLTETPIEAVFTDPSYGKFERGEALDKIAQNVKGILEEEGDEESLKVLSKTVDTV
RKQIIRKRIITEGFRLDGRRLDEVRPLYCEAGSLPGLHGSALFSRGDTQVLCTVTLGAPG
DAQRLDSIVGPPTKRFMLHYSFPPFCINEVGKRTGLNRREVGHGTLAEKALVAVLPPERD
FPYTVRINSEVMSSDGSTSMATVCGGSMALMDAGIPLQEHVAGLSVGLVTEVDSSTGTVN
EYRILTDILGLEDHLGDMDFKIAGTRNGITAIQLDIKPAGIPLDIICESLGPAYKGRLQI
LDHMEQEINAARAQDGKNSPRLVTLKYSNDDLRRLIGPLGALKMKIEEETGARMSVSDGA
LTIVAKNQSVMEKVQEKVDLIIGRAIEVGGVYKGIITSIKEYGAFVEFNGGQHGLLHVSE
LSHEPISKISDVISVGQQLSLMCIGQDLRGNIKLSLKATLPQKTKKPDPVKTSSTPVEED
PPRQQEPQNSTSYSATSPIVIRSAVECDEEEKLSTLASSVKHNSKLPRVLKTKSSSQKPK
SLKSLSNEDELGCDLGSKKTKGVKPFLLTEKRTNSGSNYTSSEEEEEEDDDKHKHMFANV
VDISDFFKDRESKVEETSIDAKKLKLGTKVTAKIVQVRARGLVLDLGGGINGMYRFEGGG
KQDFEVGSEVRVQCTSFNSKGIPVMSIVQDD
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atggcttcggtggcgataaccagaaaaaaccacctcgtctcttctctactctacagtatc
cgatgccgaagctcatatttccgtcgtccaatcaccaccagccgcctcagcttcacaacg
tcaacttccacctccccttcgccggcagatacagaaattcccgtctccagaaccaaagtc
cttgaagtattcaaagaagaattcgaaattggatcacgcctactcacgtttgaaacaggg
aagatagcgaggttcgccaatggtgcagttgtattaggcatcgacgatactaaagtgctc
tccacagtttgctcatctaaaggcgatggtgtccgcgattttttgcctctcactgtcgat
tatcaagagaaacagtttgctcaaggagtgattccaggcacatatatgcgaagagaaggt
gctccaaaagagcgagaacttctatgtggtcggctaattgatcgccctattcggccactc
tttccagctgggttttaccatgaggttcaggtgatggctagtgtgctttcttcagatggg
aagcaagatccagatgtaatggcagctaatgccacttctgctgcacttatgttatcagat
ataccatggggtggccccattggaatgatacgtgtaggaaggattgatgggcatcttgtt
gtaaatccaaccgtggatgagcttaatctaagtgatctcaaccttgtatatgcctgcaca
aaagacaagactttgatgttagatgtacaagcaagtgaaatttccgaaaaagaccttgaa
gctgcatttaggtttgcacatcctgaggcagttaaattcatcgcacctcagttaagactc
gctgaaaaagcaggaaaacagaaaaaagaatataaactatcattggtgtcagaaagaaca
atgaataaaattcgtgatttgactgaaacgcccattgaagctgtttttacagatccttct
tatggaaagtttgaacgtggagaagccttagataaaattgcacaaaatgtgaaaggtatt
ttagaggaagaaggtgatgaagaaagcttaaaagttttatcaaaaacagttgatacagtg
cgaaagcagattatacgcaaaaggatcattacagaagggtttaggctggatggaaggcgt
ctggatgaggtcaggcctttgtattgtgaagctggcagtttacctggattgcatggttca
gctttattttcacgtggagatacacaggttttatgtacagttacccttggtgcccctggg
gacgcacaacgtttggattcaattgtgggccccccaacaaaacggtttatgcttcactac
agttttccacctttctgtattaatgaagttgggaaacgaactggattaaatcgtcgtgaa
gttggacatggcactctagctgaaaaggctcttgttgctgtattgcctcctgaacgtgac
tttccatatactgttcgtatcaattctgaagtcatgagctctgatggttcaacatcaatg
gcaactgtctgtggaggtagtatggctttaatggatgctggcatccctttacaggaacat
gttgcagggctttcagtaggccttgttactgaagttgattcatcaactggcactgttaat
gagtatcgtatactaactgatattttgggtctggaagatcatcttggggacatggatttt
aaaattgcagggacccgaaatggaattacagcaatccaattggacataaaacccgctgga
attcctcttgatattatctgtgagtcactgggacccgcatataaagggagactccaaatc
cttgaccatatggaacaagaaataaatgcagcacgtgctcaagatggaaaaaattctcca
agattagttaccttaaaatatagcaacgatgatttacgccgattgattggaccacttggc
gccttgaagatgaaaatcgaagaagaaacaggtgctcggatgtctgtgagtgatggggcc
ctaactatagtcgcaaagaatcaatccgtaatggaaaaagtgcaagaaaaggttgattta
ataattgggagagcaattgaagtaggaggtgtttacaaagggattataacttcaataaaa
gagtatggagcttttgtagagttcaatggtggacaacatggcctcttacatgtttctgaa
ttatctcatgaaccgatatccaaaatttcagatgtgatttcagtcgggcagcaactttct
ttaatgtgtatcgggcaggatcttcgtggcaacataaaactctctctaaaagccacttta
cctcaaaagaccaaaaaacccgatccagtcaaaacatcttcgacacctgtcgaggaggat
ccgccacgtcagcaagaaccccagaattccacatcgtattctgccacatcaccgattgtg
atccgaagcgctgttgagtgtgatgaggaggagaaactgtccactttagcttcgagtgtc
aaacataacagcaaattgccacgtgttttgaagacaaaatcttcttctcaaaaacccaag
agtttaaagtctttaagtaatgaggatgaattaggttgtgatttgggatctaaaaaaact
aaaggggtgaaaccgtttttactaacggaaaaaagaacgaatagtggttctaattataca
agctcagaagaagaagaagaggaagatgatgataaacataaacatatgtttgcaaatgta
gtggatatttctgatttttttaaagatagagaatcaaaagtagaggagacttcaattgat
gcaaaaaagctgaagcttggaacaaaagtaactgcaaagattgttcaagtacgtgctcgt
ggattagtattggatttgggtggtggaattaatgggatgtatcggtttgagggtggtggg
aagcaggattttgaagtaggcagtgaggtacgagtacaatgtacaagctttaacagcaag
ggtattcctgtaatgtcaattgtgcaggatgattag
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