Ligilactobacillus saerimneri: GTO87_03430
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Entry
GTO87_03430 CDS
T08336
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03410
Base excision repair
lsw03430
Mismatch repair
lsw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GTO87_03430 (recJ)
03430 Mismatch repair
GTO87_03430 (recJ)
03440 Homologous recombination
GTO87_03430 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsw03400
]
GTO87_03430 (recJ)
DNA repair and recombination proteins [BR:
lsw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GTO87_03430 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GTO87_03430 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GTO87_03430 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
DHH
RecJ_OB
DHHA1
PKS_DH_N
Motif
Other DBs
NCBI-ProteinID:
QLL77732
UniProt:
A0A7H9EKC0
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Position
676448..678781
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AA seq
777 aa
AA seq
DB search
MFERKYDWVQSEEPADDQVEALHQATGLSPLVVRILIARGYDTADKIKRFMTVDEKSFYD
PFLMHDMEQACQRIQDAIVADEKIMIYGDYDVDGITSTAIMYETLTSYLGAQNVAYYIPD
RFIDGYGPNRQVYERMVADGVQLLITVDNGVSGKDEVAYAQANGVDVIITDHHELPSELP
EAVAIVHPAHPAGKYPFKSLSGAGVALMVAAALLEEFPQEMFDLATLGTVADVMPLVDEN
RALVKVGLQVLQNTSRPGLQALYKEAEVDAAHLNEETIQFALAPRLNSLGRMGSAAIAVQ
LLTSLDDELVADLAQQVEEVNAKRKQTVDTENEQAQELLDPEQKVNILAQVGWHEGVSGI
LAGRILEQTNKPTIIFSIDQTTGLAKGSGRSNDNFDLFAALNPHRDLFENFGGHKKACGL
TIEKEKLPELTTLLQTEAQKQGIKTVSKPTQHLATTLRVDDITVDLIKELSQLGPFGEEN
PAPVFAFKDYELVQAKTIGKNNNYLRLLLKQKGGTIAALSFTPLSQAQLAAIVADPSPVT
FIGTLALNYWRNTVTPQIMITDLEYAGIRILDQRTTRLTAQRLTTTGTYICFNEKLAQTI
KPLLPQAATLRLATEVMEQASATTPLRVDELVLVDMPQSLTELQELLQAVAPQTIRAILY
VKDEAYMNGMPTRADFANAYRFVSRQQNFDIRTNLPKMVKYFHLQREQIIFILQVFFEVG
FVKINDGVLSGQQVTGHFNLKQTNTYQRRLEMMAIQEKLFYSDFAQLREWLQKQLKS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
ttgtttgaacgaaagtatgattgggtgcagtcagaagaaccagcggatgatcaggttgag
gcgttacaccaagccacagggctaagcccattagtggtgcggatccttattgcgcggggt
tatgatactgctgataagatcaaacggtttatgacagttgacgagaaaagcttttatgat
cctttcttgatgcatgatatggagcaggcatgtcaacggattcaggatgccatagttgca
gatgaaaagattatgatctatggtgactatgatgttgatgggattaccagtacagctatc
atgtatgaaacgctgaccagctacctgggtgcccaaaacgttgcatattatattccggac
cgttttattgatggatatgggccgaaccgccaagtttatgaacggatggtggcggatgga
gtgcagttactcattacggttgataatggggtcagtggtaaggatgaagtggcttatgcc
caggccaatggtgtagatgtaatcatcactgaccaccatgaacttccaagtgaattacca
gaagcagtggctattgttcaccccgcacacccagcagggaaatacccatttaaatcactt
tctggtgctggagtggccttgatggtagcagcagctttactagaggaatttccccaggaa
atgtttgacctggctacactgggcacagtggcagatgtaatgccattagtggatgaaaat
cgggctctagttaaggtgggcttacaagtgttacaaaatactagtcgacctggcttgcaa
gcactatataaagaagctgaagttgatgctgctcatttaaatgaagaaacgattcaattt
gcgctagccccccggcttaattccctgggacgaatgggcagtgcagctattgcagtgcaa
ctgttaactagtttagatgatgaacttgtggctgatttagcgcaacaagtagaagaagtt
aatgctaaacgcaagcaaacagttgatactgaaaatgaacaggcacaagagttattggat
ccagagcagaaggtaaacatcttagcacaagtaggttggcatgaaggtgtttcggggatt
ttagcgggaagaatattagagcagaccaataagccgacgatcatttttagtatcgatcag
acaacaggcttggccaaaggttcagggcgttcgaatgacaatttcgacttatttgcagcg
ttgaatccccaccgtgatttgtttgaaaattttggtggccataaaaaagcctgtggatta
acgatcgagaaagaaaaattacctgaattaacaacactcttgcagacagaagcccaaaag
caagggataaaaactgtttctaagcccactcaacacttagcaacaacgttaagagttgat
gatattacggttgacttaatcaaagagctatctcaattaggaccgtttggtgaagaaaat
ccagctcctgtgtttgcttttaaagactacgagctggtccaggcaaaaaccatcggcaaa
aataataattatttgcgcttgttgttgaaacaaaaaggtgggaccattgctgccttgtca
tttacgcccctctcgcaagcccagttagcagcgattgttgctgatcctagtccagtgact
tttattggaactttggcattaaattactggcgcaataccgttacaccgcagattatgatc
acggatttagaatatgcaggaataaggatccttgatcaacgtactacacggttaacagcg
caacggttgacaacaactgggacttatatttgttttaatgaaaaacttgcccaaactatc
aaaccgctcttaccacaagcagcaactttacgcttagcaacagaagtcatggagcaggca
tcagctaccacaccactacgagtggatgaactagtgttagttgacatgccccagagctta
actgagttacaagaattattgcaggcggtagcaccccaaactattcgggccattctgtac
gttaaagatgaggcgtacatgaacgggatgccaacccgggctgattttgctaatgcttat
cggtttgttagtcgacaacagaattttgacattcggactaatttgcctaaaatggtaaag
tattttcatttgcaaagggagcaaatcattttcattctacaggtgttttttgaagtagga
tttgttaaaattaacgatggtgtgttatctggtcaacaggtgacaggtcattttaatctc
aaacaaactaatacttatcaaaggcgtctagaaatgatggctatccaagaaaaactcttt
tatagtgattttgcgcaactaagagagtggctccaaaagcagttaaagagttag
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