Ligilactobacillus saerimneri: GTO87_06295
Help
Entry
GTO87_06295 CDS
T08336
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
lsw
Ligilactobacillus saerimneri
Pathway
lsw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GTO87_06295 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsw03019
]
GTO87_06295 (rny)
Messenger RNA biogenesis [BR:
lsw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GTO87_06295 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_NusA_2nd
V-ATPase_G
KH_2
Exonuc_VII_L
HAUS-augmin3
Motif
Other DBs
NCBI-ProteinID:
QLL78834
UniProt:
A0A7H9EMB5
LinkDB
All DBs
Position
complement(1214288..1215850)
Genome browser
AA seq
520 aa
AA seq
DB search
MIIVILAIAIIAALMIGLVIGYSLRKAFHEKALDQATQTAEGIIATAKKDAAARKKEALL
EAKDESHRYRKEIESELKERRAEIQKQENRLLQREENLDRKDSQLDKREGALEQRESKYT
RDNQILKQKQEDVSNLIQQQQDKLAQIAAMTQDDAKQLILKQTRASLDHELAVMIKDNEA
EIKATADKTAKNLIAQAIQRSAADMVSESTVSVVTLPNDEMKGRIIGREGRNIRTLETLT
GIDLIIDDTPEAVVLSGFDPVRREIAKVALEKLIQDGRIHPARIEEMVEKATKEIDSKIR
EKGEQALFDLGLHAMHPDLIKTVGRMHYRTSYGQNVLVHSIEVAKITGVLAAELGENVVM
AKRAGLLHDIGKAIDHEVDGSHVEIGVELAKKYKESDVVVNTIASHHGDVEPKSVIAVLV
AAADAISAARPGARSESLEKYIHRLEKLETIANDFSGVKKSYAIQAGREVRVIVKPSEIN
DLQATVLARDIKNKIENELEYPGHIKVTVIRETRAIEYAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgataatcgtaatcctcgccatcgctattattgcggctttaatgatcggtcttgttatc
ggatatagtttacgtaaggcttttcacgaaaaggctttggatcaagctacgcagacagca
gaagggattattgctaccgccaaaaaagacgcggcagctcgcaagaaggaagctctgtta
gaggctaaagatgaaagtcatcgttatcgtaaagaaatcgaaagtgaactaaaagagcgg
cgagccgaaattcaaaagcaagaaaatcggcttttacaacgggaagaaaaccttgatcgc
aaagactcccagcttgacaaaagagaaggagcacttgaacagcgggaaagtaagtatacc
cgggataaccagatcttaaagcaaaagcaagaagatgtttccaacttaattcagcaacaa
caagataaactagctcagattgctgctatgacgcaggatgatgctaagcaattaatcttg
aagcaaacacgggctagtcttgatcatgaattagcagtaatgatcaaagataatgaagct
gaaatcaaagcaactgctgataagacagccaagaaccttattgcgcaagcaattcaacgg
agtgctgccgatatggtttctgaaagcacggtttccgtcgttaccttacctaacgatgaa
atgaagggacggataatcgggcgtgaaggacgcaatattcgtaccctagaaacgttaaca
gggatcgatttgattattgacgacacaccagaggcagtcgttttgagtggttttgacccg
gtaagaagagaaattgccaaggtggcattagagaagttgattcaagacggacggattcat
cccgctcggattgaagaaatggttgaaaaagctactaaggaaattgattctaaaattaga
gaaaaaggggagcaagccttgtttgatctgggcttgcacgcaatgcaccctgatttaatt
aaaaccgttgggcggatgcactaccggaccagttatgggcaaaatgttttggttcactcc
atcgaagtagctaaaattacgggagtgctagcagctgaattaggcgaaaatgtcgtaatg
gcaaaacgcgcaggattattacacgatatcggaaaagcaattgatcatgaagtagatggt
tcacacgtagaaataggtgtcgaattggctaagaagtacaaagaaagtgatgtagttgtg
aatactatcgcatcacatcacggggatgtagaaccaaaatcagtaattgcagtgttagtg
gctgcagctgatgcgatttctgcagctcggccaggggcacggagtgaatcacttgaaaag
tatattcaccgtttagaaaaactggaaacaattgctaatgatttctcaggagttaagaag
agttatgcaatccaagcaggacgcgaagttcgggtgattgtaaaaccaagcgaaatcaat
gatttacaagcaacggtcttagcacgagatatcaagaataagattgaaaatgagctagaa
tatccaggacatattaaggtcacggttattcgcgaaacgagagcaatcgaatatgccaag
tag
DBGET
integrated database retrieval system
