Lysobacter soyae: H8L67_03350
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Entry
H8L67_03350 CDS
T10230
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lsy Lysobacter soyae
Pathway
lsy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lsy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H8L67_03350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsy03021
]
H8L67_03350 (rpoC)
03400 DNA repair and recombination proteins [BR:
lsy03400
]
H8L67_03350 (rpoC)
Enzymes [BR:
lsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H8L67_03350 (rpoC)
Transcription machinery [BR:
lsy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H8L67_03350 (rpoC)
DNA repair and recombination proteins [BR:
lsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H8L67_03350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QYR53548
UniProt:
A0ABX8WRT6
LinkDB
All DBs
Position
714799..719052
Genome browser
AA seq
1417 aa
AA seq
DB search
MKDLLNLFNMQRALPDFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCSA
IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMSLRDIERILYFEAYVVTDAGLTTLEPRQLLNEEQYMLAREEFGKDFEAGM
GAEAVFELLKEIDLQSEMVNLKEEIASTSSETKLKRFTKRIKLIEAFQESGNRPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELTAPDIIVRNEKRMLQ
ESVDALMDNGRRGRAITGTNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHECGLPKKMALELFKPFIFAKLQSRGLATTIKAAKKLVEREEAEVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMASNNILSPANGEPIIVPSQDVVLGLYYMTRALENKRGEGMVFANVSEVKRAYESQ
HDEGGRVVELHAKVKVRITGTVGDVTGTKIVETTVGRALLAEIMPKGLPFELVNTELTKK
NISRLINTSYRMLGLKDTVVFADQLMYTGFRYATRAGVSIGIDDMTIPDAKKGILASAEQ
EVLEIQEQYQSGLVTAGERYNKVVDIWSRTNEKVAKAMMDTIGTEKVVNAKGETIDQKSM
NSIYIMADSGARGSQAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDVVIVLDDCGTMEGITMTPIIEGGDEVEPLRDRV
LGRIVAEDVFLPGDDEEPIVTRNTLLDEAWVKKLEDNSVQLVKVRSTITCEAPFGVCAHC
YGRDLGRGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAIDNITVKTTGTV
KFNNLKFVEQANGNVVAVSRSGEVSVLDLHGRERERYKLPYGATITVHDGAAVKGGQTIA
NWDPHNHPIVSEVQGFVRFIDFTDGITVIEKTDELTGLASREITDPKRRGSQGKDLRPLV
RIVDKAGKDLNIPGTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL
PRVADLFEARKPKDQAILSEISGVVSFGKDTKGKQRLIIKGPDGQEHEELIPKYRQIIVF
EGEHVEKGDTVVDGEPNPQDILRLKGVEELAAYLVKEIQDVYRLQGVKINDKHIEVIIRQ
MLRKVEITDAGDSRYLAGEQLERQRVIEENRSIAARKEIEAKWAPVLLGITKASLATESF
ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHTQRRRKAEGLLSE
DELDVLAAAPSVVDVEEPAAPQVMMYEGDEPAANPEN
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatcttctcaatctgttcaacatgcagcgtgcgttgccggacttcgacgcgatc
aagatcgcgctcgcatccccggacatgatccgttcgtggtcgttcggcgaagtcaaaaag
ccggaaaccatcaactaccgcaccttcaagccggaacgtgacggcctgttctgctcggcc
atcttcggaccgatcaaggactacgaatgcctctgcggcaagtacaagcgcatgaagcat
cgcggcgttgtctgtgaaaagtgcggcaccgaagtcacgctcgccaaagtgcgccgtgaa
cgcatgggccacatcgatctcgcatcgccggtcgcgcacatctggttcttgaagtcgctg
ccgtcgcgcatcggtttgatgctggacatgagcctgcgtgacatcgaacgcatcctctac
ttcgaagcctacgtcgtcaccgacgccggcctcaccacgctcgaacctcgccagttgctc
aacgaagagcaatacatgctggcccgcgaagagttcggtaaggacttcgaagccggcatg
ggtgctgaagccgtgttcgaactcctcaaagagatcgacctgcaaagcgaaatggtcaac
ctgaaggaagagatcgcctcgacctcctcggaaaccaagctcaagcgtttcaccaagcgc
atcaaattgatcgaagccttccaggaatcgggcaaccgtccggaatggatgatcatgacg
gtgttgccggtgttgccgccggacctgcgtccgctggtgccgctggacggcggtcgtttc
gcgacctccgacctcaacgacctctaccgtcgcgtcatcaaccgcaacaaccgtttgcgc
cgcctgcttgaactcaccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcaa
gaatcggttgacgccttgatggacaacggccgtcgcggccgcgccatcaccggcaccaac
aagcgcgccctcaagtcgctcgccgacatgatcaagggcaagcaaggtcgcttccgtcaa
aacttgctcggcaagcgcgtcgactactcgggccgttcggtcatcgtggtcggtccgacc
ctgcgtctgcacgaatgcggtctgccgaagaaaatggcgcttgaattgttcaagcccttc
atcttcgccaagctgcaatcgcgcggcctcgccaccaccatcaaggcggcgaagaagctc
gttgaacgcgaagaagcggaagtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgttgctgaaccgcgcaccgacgcttcaccgtctcggtatccaggcattcgaaccggtc
ctgatcgaaggcaaggccatccagttgcacccgctcgtgtgtacggcattcaacgccgac
ttcgacggtgaccaaatggctgtccacgtgccgttgtcgatcgaagcgcagctcgaagcc
cgcgctttgatgatggcctcgaacaacatcctgtcgcctgccaacggcgagccgatcatc
gtgccgtcgcaagacgtcgtgttgggcttgtactacatgacccgcgcgcttgaaaacaag
cgtggtgaaggcatggtgttcgccaacgtctctgaagtgaagcgtgcatacgaatcacaa
cacgacgaaggcggtcgcgtggtcgaactgcacgccaaggtcaaggtgcgtatcaccgga
accgttggggatgtcaccggcaccaagatcgttgaaaccaccgtcggtcgtgccttgctc
gccgagatcatgcccaagggcctgccctttgagctggtcaacaccgagctgaccaagaag
aacatcagccgcctgatcaacaccagctatcgcatgttgggcttgaaggacaccgtcgtg
ttcgccgaccaactgatgtacaccggcttccgttatgcaacgcgcgccggcgtgtccatc
ggtatcgacgacatgaccatcccggacgccaagaagggcatcctggcctcggccgaacaa
gaagtgctggaaatccaagaacagtaccaatcgggtctcgtgaccgccggcgaacgctac
aacaaagtggtcgacatctggtcgcgcaccaatgaaaaggtggccaaggcgatgatggac
accatcggcaccgagaaggtggtgaacgccaagggcgaaaccatcgatcagaagtcgatg
aactccatttacatcatggccgactcgggtgcgcgtggttcgcaagcccagatccgtcag
ctcgccggtatgcgtggtttgatggcgaagccggacggctcgatcatcgaaacgccgatc
acggcgaacttccgcgaaggtctgaacgtgcttcagtacttcatctcgacccacggtgca
cgtaaaggtctggccgataccgcactgaagacggcgaactcgggttacctgacccgtcgt
ctggtcgacgtggcacaagacgtggtcatcgtgctcgacgactgcggcacgatggaaggc
atcaccatgacgccgatcatcgaaggcggcgacgaagtcgaaccgttgcgcgaccgcgtc
ctcggccgcatcgtggcggaagacgtgttcctgccgggcgacgacgaagaaccgatcgtc
acccgcaacacgctgctcgacgaagcttgggtcaagaagctggaagacaacagcgtgcag
ctggtgaaggtgcgttccaccatcacctgtgaagcaccgttcggcgtctgcgcacactgc
tacggtcgtgacctcggtcgcggtcacttggtcaacatgggtgaagccgtcggcgtcgtc
gcggcacaatccatcggtgaaccgggtacccagctcaccatgcgtaccttccacatcggt
ggtgcggcatcgcgtgcggcagctatcgacaacatcaccgtgaagaccaccggtacggtc
aagttcaacaacctcaagttcgttgaacaagccaacggcaacgtcgttgcggtgtcgcgt
tcgggcgaagtgtcggtgctcgacttgcacggtcgcgagcgcgaacgttacaagctgcct
tacggcgccaccatcaccgttcatgacggtgcggcggtgaagggcggtcaaaccatcgcc
aactgggatccgcataaccacccgatcgtttcggaagtccaaggtttcgtgcgcttcatc
gacttcaccgatggcatcaccgtcatcgagaagaccgacgaactcaccggcttggcgtcg
cgtgaaatcaccgatccgaagcgtcgtggttcgcaaggcaaggacctgcgtccgctggtt
cgcatcgtcgacaaagcaggcaaggacctcaacatcccgggtaccgacctgccggcgcaa
tacctgttgccgccgcgctcgatcgtcaacctgcaagacggcgccgccgtcggcgtgggt
gacgtggtcgcgaagattccgcaagaagcttcgaagacccgcgacatcaccggtggtctg
ccgcgcgtggccgacttgttcgaagcgcgcaagccgaaggatcaagcgatcctgtccgaa
atctcgggcgtggtcagcttcggtaaggacaccaagggcaagcaacgtctgatcatcaag
ggaccggacggtcaggaacacgaagaactgattcccaagtaccgccaaatcatcgtgttc
gaaggcgaacacgtggagaagggcgataccgtcgtggacggcgaaccgaacccgcaagac
atcctgcgtttgaagggtgtcgaggaattggccgcctacctcgtcaaggaaatccaggac
gtgtaccgcctgcaaggcgtgaagatcaacgacaagcacattgaagtgatcatccgtcag
atgctgcgcaaggtggaaatcaccgatgccggtgacagccgttacctcgccggtgaacag
ctggaacgtcagcgcgtcatcgaggaaaaccgttcgatcgccgcccgcaaggaaatcgaa
gccaagtgggcaccggttctgctcggtatcaccaaggcctcgttggcgaccgagtcgttc
atctcggcggcgtccttccaggaaaccactcgcgtcctcaccgaggcagcggtccgtggt
acccgcgacaacctgcgcggcctgaaggaaaacgtcatcgtcggtcgtctgattccggcc
ggtacgggtctcgcctatcacacccaacgtcgtcgcaaggccgaaggcctgctcagcgaa
gacgagctggatgtgctggccgccgcaccgtcggtggtggacgtcgaagaacccgcggca
ccgcaagtcatgatgtacgaaggtgacgaaccggccgcaaacccggaaaactga
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integrated database retrieval system
