Lachancea thermotolerans: KLTH0F04598g
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Entry
KLTH0F04598g CDS
T01117
Name
(RefSeq) U5 snRNP GTPase SNU114
KO
K12853
114 kDa U5 small nuclear ribonucleoprotein component
Organism
lth
Lachancea thermotolerans
Pathway
lth03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lth00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
KLTH0F04598g
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lth03041
]
KLTH0F04598g
Spliceosome [BR:
lth03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
KLTH0F04598g
Complex C
U5 SnRNP specific factors
KLTH0F04598g
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFG_C
EFG_IV
EFTUD2
MMR_HSR1
EF-G_D2
GTP_EFTU_D2
nSTAND_NTPase5
SRPRB
nSTAND3
EFG_III
AAA_29
PucR
Motif
Other DBs
NCBI-GeneID:
8292603
NCBI-ProteinID:
XP_002554408
UniProt:
C5DKH0
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Position
F:join(406984..407006,407069..409862)
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AA seq
938 aa
AA seq
DB search
MDEELYDEFGNLIGGEAEDSDTQDESLVQEEESSALQIAEANPSTEIVHRETLATAFPDD
VEILVETEDHQATTTPLVEPAEINVKKQALYTESIKHLPRVNYDRDYFSTLHEIPERTMN
VTILGPLHSGKTSLVDLLILQAHKKLPGTSKNVREGWKPLKYMDNTKLEIERGISYKLNG
FSFLATDLQQKSVALTVLDCPGHVNFIDEVAVSLAASDTCVIVVDVVEGVTSIVQQLIKQ
CEKHGLPIVFVLNKVDRLILELKLPPQDAYLKLANIVNQINSFSNGSYSPEQGNVLFSSA
KLGFTFSIEEFVLYYYSKQLGMDKLEGFLKRMWGNIYFQDGRFSKVTNQSGLTTFSEFIL
IPLYKIFTHSLSNDPENLAVILKREFRVTLPREYFKIDPQPLLRKVLGLIFRDQAGFVGS
VTSFGSFACEAAPLKKKFFDVAANENDTLAHVLKLMDYCGDVWALVRVYQGVLNKHAMIK
VLDGGLPPEDDAPEVEIQDIALMGGRYVFPVEKAHEGQIVLVKGIDQYITKSGTLASSTS
TIFPPIDYINDPVFKVVLQVLHPQELPLMLEGLKKVNKFYPGMFTCVEESGENVILGTGE
LYLDCLLYDLRTNYARIEIQVSSPLVKFSETCVGESFASIPVSGASGHLELSIAAQPLER
ELAEDLASGALAESEIQNKRQLSKKLREKYSWDSLAARNVWSLRSSNVLVDDTLPDETDK
ERLAEAKHSICQGFEWATREGPLAEEPIRGVHFRLLSVSMGDDVRAGQLIPLVRKACYVA
MLTATPALLEPIYEACVLVHDDAADVVEELFSKRRGARVYNRVKIPATPLIELRGQIPVI
DSIGFETDLRLATNGTGMCQLQFWNKIWRKVPGDVMDEDAVIPKLKPAPRDSMSRDFVMK
TRRRKGLSSEGYATQDGPSLARYIEPELFQKLKDNNLV
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaactctacgacgaattcggtaacctgataggtggtgaagcagaagattca
gacacacaagatgagtctctggttcaagaagaagagtcatctgcccttcaaatagcagag
gcaaacccttcaacagagatagtgcatagagagactcttgctacggcttttccagatgat
gttgaaatcttagtagaaacagaagaccaccaagctacgacaacgccgttggtggaacca
gcagagataaatgtaaagaagcaggcgttgtatactgagtccataaaacacttgccccga
gttaattacgatcgtgactacttctcgaccctacatgaaatccctgagagaacaatgaat
gtcacgatacttggacctctgcactcagggaaaacgtctctggtggatcttctaatccta
caggcccacaaaaaacttcctggtacgtcaaaaaacgttagagaaggatggaagccgcta
aaatacatggataatacaaaattggagattgaacgaggtatcagctacaagttgaatggt
ttcagttttttagccaccgatctacaacaaaaatccgtcgcacttacagttcttgactgt
ccaggtcatgtgaatttcatagacgaggttgctgtatcacttgcagcgtcggacacctgt
gtgattgtggttgatgtagtcgagggcgtcacgtccatagtgcagcaactgataaaacag
tgcgaaaagcacggcctgccaattgtgttcgttctcaacaaagttgatagattgatcttg
gagctcaaacttcccccacaagatgcataccttaagcttgcaaacatcgtcaaccagatc
aacagcttctccaacgggtcttactccccagagcaaggaaacgttttgttttcatctgca
aaactcggattcacgtttagcatagaagaatttgtgctttactattactcaaaacagctt
ggtatggataaacttgaaggttttctcaaacgcatgtggggaaacatttacttccaagat
gggaggttttccaaagtgaccaatcaatcagggttaacaacattttcggaattcatttta
attcctctttacaaaatctttacacactcgctgtcaaacgatcctgaaaatctcgcggta
atattaaaacgcgaatttcgagtgacattacctcgcgaatatttcaaaatagacccccag
ccattacttcgaaaggtgcttgggttgatttttcgagatcaagcaggtttcgttggctct
gtaacttcttttggctcctttgcatgtgaagcagccccgctaaaaaagaagttctttgat
gtcgccgcgaatgagaacgacactttggcccatgtcttaaagttaatggactattgcggg
gatgtttgggctctagtgagggtatatcaaggcgtgctgaacaaacatgctatgataaaa
gtgctggacggaggtttgcctcctgaggacgacgctccagaagttgaaatacaggacatc
gcattgatgggcggaaggtacgtttttccagtagaaaaagcgcacgaaggacagattgta
cttgtcaaaggcattgaccagtatatcacaaaatcgggaactttagctagttcaacctca
acaatcttccctcctattgattatatcaatgatccggtgttcaaggttgtgcttcaagta
ctgcacccacaagagttgcctctcatgctcgaaggtctaaagaaagtgaacaagttttac
cctggaatgttcacctgtgtggaagaaagcggtgaaaatgtgatactgggcacaggcgaa
ctgtaccttgattgtcttctctacgatttaagaacaaactatgcgagaatagaaattcaa
gtttcaagcccgcttgtaaagttctccgaaacctgcgtaggcgagtctttcgcatccatc
cccgtaagcggagcaagtggccacctggagctaagcatcgccgctcagcctttggaacgc
gaactagctgaggatttggcgagtggagcattggcagagagtgaaatacagaataagcgt
cagctctcgaagaagcttagagagaagtatagctgggattcattagcggcaaggaacgtt
tggagcttacgcagtagtaatgttctcgttgatgacacccttcctgatgaaactgacaaa
gagcgtctagcggaagctaaacactctatatgccagggctttgaatgggctacaagggaa
ggtccgctcgctgaagagccaatacgtggcgtccacttcaggcttctaagtgtttccatg
ggggatgacgtgcgtgcaggccagctcatacctcttgtgcggaaagcttgctacgtggct
atgttgaccgcgacgccggcgcttctggaaccaatctacgaagcctgcgttcttgttcac
gatgacgcggcagacgtggttgaagagttattttcgaaaagacgtggtgcgcgtgtctac
aatcgagtcaagatccctgcaacgccgttgatcgaactgcgaggccagatccctgtaatc
gattctattggttttgaaaccgacctgagactcgccactaacggcacaggtatgtgtcaa
ttgcagttctggaacaaaatttggagaaaggttccaggagatgttatggacgaagatgct
gtaataccaaagttaaaaccagcacccagggatagtatgagtcgtgactttgtcatgaaa
acaagacgaaggaaaggactgtccagcgaaggctacgctacgcaagacgggccttcgctg
gctaggtatattgagcccgagctgttccaaaaattaaaagataacaatttggtttaa
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