Solilutibacter oculi: DCD74_01500
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Entry
DCD74_01500 CDS
T05527
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lue
Solilutibacter oculi
Pathway
lue03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lue00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCD74_01500 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lue03021
]
DCD74_01500 (rpoB)
03400 DNA repair and recombination proteins [BR:
lue03400
]
DCD74_01500 (rpoB)
Enzymes [BR:
lue01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCD74_01500 (rpoB)
Transcription machinery [BR:
lue03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCD74_01500 (rpoB)
DNA repair and recombination proteins [BR:
lue03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCD74_01500 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
AXA83538
UniProt:
A0A344J3C8
LinkDB
All DBs
Position
318086..322258
Genome browser
AA seq
1390 aa
AA seq
DB search
MATAPTTQYTFTEKKRVRKNFGKRKSILEVPFLLAIQVDSYREFLQADKAMNHREDKGLH
AALKSVFPITSYNGYAALEYVGYTLGQPVFDERECRNRGLSYGAPLRVTVRLVIYDRESS
SKAVKYVKEQEVYMGEVPLMTDNGTFIVNGTERVIVSQLHRSPGVFFDHDRGKTHSSGKL
LYSARIIPYRGSWLDFEFDPKDALYTRIDRRRKLPVSVLLRALGYSNEEMLNEFFEINTF
HIDPSEGVQLELVAERLRGETLEFDLADGDKVIVEAGKRITARHVKQLEQSGIEALAVPD
SYIVGRILSHDVIDPTTGELLASANDEITEDMLGKLRKAGIANVGTLWVNDLDRGPYLSN
TLRVDNTRTQLEALVEIYRMMRPGEPPTKDAAQNLFHNLFFTFERYDLSSVGRMKFNRRL
GRKEVTGAPVLYDHKYLGERGDDESKRLVEANGQGSDILDVIRVLSEIRNGRGVVDDIDH
LGNRRVRSVGEMAENTFRVGLVRVERAVRERLTMAEADGLTPQDLINAKPVAAAMKEFFG
SSQLSQFMDQNNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCTIETPEGP
NIGLINSLAVFARTNSYGFLETPYRKVVDGKVTDQIEYLSAIEENEYVIAQANAAQDTKG
KLTSEFVNCRYQGDTQLRPPSEVDFMDVSPMQTVSVAAALVPFLEHDDANRALMGANMQR
QAVPTLRSQKPLVGTGIERAVARDSGVTVNARRGGVIEQIDAARIVVKANENEIEGETDA
GVDIYNLVKYTRSNQNTCINQNPLVNVGDVVAAGDVLADGPSTDIGELALGQNMLVAFMP
WNGYNFEDSILLSERVVEEDRYTTIHIEELTVQARDTKLGAEEISADIPNVSEHALNRLD
ESGVVYIGAEVRAGDILVGKVTPKGEAQLTPEEKLLRAIFGEKASDVKDSSLRVPPGMDG
VVIDVQVFTRDGVEKDKRAVKIQEEEVRRVKKDFDDQRMILEAAIFARLRSQLIGKTANG
GGGLKKGETVTSLVLDQARPRDWFHFNMKDEDAAEAIDRAQKQIALHEKEFERRFEDKRS
KIAQGDDLAPGVLKMVKVFLAVKRRIQPGDKMAGRHGNKGVVSNIVPVEDMPYMADGQTV
DIVLNPLGVPSRMNIGQILEVHLGLAAKGLGRKIQAMLDAKAKVKDLRDFLDQIYNHDAK
ALGEVRVDLSQFSDEELLTLAGNLTDGVPMATPVFDGAAESEIKAMLALADLPTSGQAQL
YDGRTGEAFDRKTTVGYMHMLKLNHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGE
MEVWALEAYGAAYTLQEMLTVKSDDVQGRNQMYKNIVDGDYDMVAGMPESFNVLVKEIRS
LGINMELEEH
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgcgcccaccacgcaatacacgttcaccgagaagaagcgcgtccgcaagaac
ttcggcaagcgcaagtcgattctcgaagtcccgttcctgctggcgatccaggtcgattcc
taccgcgagttcctgcaggccgacaaggccatgaaccaccgcgaggacaagggcctgcac
gccgcgctcaagtccgtgttcccgatcaccagctacaacggctacgccgcgctggaatac
gtcggctacacgctgggccagccggtgttcgacgagcgcgagtgccgcaaccgcggcctg
agctacggcgccccgctgcgcgtgaccgtgcgcctggtgatctatgaccgcgagtcctcc
agcaaggccgtgaagtacgtgaaggagcaggaggtctacatgggcgaagtgccgctcatg
accgacaacggcacctttatcgtcaacggcaccgagcgcgtcatcgtctcgcagctgcac
cgttcgccgggcgtgttcttcgaccacgaccgtggcaagacccacagctcgggcaagctg
ctctacagtgcccgcatcatcccctaccgcggctcgtggctggacttcgagttcgacccg
aaggacgcgctctacacccgtatcgaccgccgccgcaagctgccggtctcggtgctgctg
cgtgcgctgggctactccaacgaggagatgctcaacgagttcttcgagatcaacaccttc
cacatcgatccgtcggaaggcgtgcagctggagctggtcgccgagcgactgcgcggcgag
acgctggaattcgacctggccgatggcgacaaggtcatcgtggaggccggcaagcgcatc
accgcgcgccacgtcaagcagctggaacagtcgggcatagaagccctggccgtgccggac
agctacatcgtgggccgcatcctctcgcatgacgtcatcgacccgaccaccggcgagctg
ctggcttcggccaacgacgagatcaccgaggacatgctcggcaagctgcgcaaggcgggc
atcgccaacgtcggcacgctgtgggtgaacgacctcgaccgtggcccgtacctgtcgaac
acgctgcgcgtggacaacacgcggacccagctcgaagcgctggtcgagatctaccgcatg
atgcgtcccggcgagccgccgaccaaggacgccgcgcagaacctcttccacaacctgttc
ttcaccttcgagcgctacgacctgtcgagcgtgggccggatgaagttcaaccgccgcctg
ggccgcaaggaagtcaccggcgcgccggtactctacgaccacaagtacctgggcgagcgc
ggcgacgacgagtccaagcgcctggtcgaggccaatggccagggttcggacatcctcgac
gtcatccgcgtgctgagcgagatccgcaacggccgtggcgtggtggacgacatcgaccac
ttgggcaaccgtcgcgtgcgttcggtcggtgaaatggccgagaacaccttccgcgtcggc
ctggtgcgcgtcgagcgcgccgtgcgcgagcgcctgaccatggccgaggccgatggccta
acgccgcaggacctgatcaacgccaagccggtcgcggccgcgatgaaggagttcttcggt
tcctcgcagctgtcgcagttcatggaccagaacaacccgctgtcggaagtgacgcacaag
cgtcgcgtctcggcactgggcccgggcggcctgacccgcgagcgcgccggcttcgaagtg
cgcgacgtgcacccgacccattacggccgcgtctgcaccatcgagacgccggaaggcccg
aacatcggcctgatcaactcgctggccgtgttcgcccgcaccaacagctacggcttcctg
gagacgccgtaccgcaaggtggtggatggcaaggtcaccgaccagatcgagtacctgtcg
gcgatcgaagagaacgagtacgtcatcgcccaggccaacgcggcgcaggacaccaagggc
aagctgaccagcgagttcgtcaactgccgctaccagggtgacacccagctgcgtccgccg
agcgaagtcgacttcatggacgtgtcgccgatgcagaccgtgtcggtcgcggcggcgctg
gtgccgttcctggagcacgatgacgccaaccgcgcattgatgggcgccaacatgcagcgc
caggccgtgccgacgctgcgcagccagaagccgctggtcggcaccggcatcgagcgcgcc
gtggcgcgcgactcgggcgtgacggtgaatgcccgtcgtggcggcgtgatcgagcagatc
gacgcggcccgcatcgtggtcaaggcgaacgagaacgagatcgagggcgagaccgacgcc
ggcgtcgacatctacaacctggtcaagtacacccgttccaaccagaacacctgcatcaac
cagaatccgctggtgaacgtgggcgacgtggtggcggcgggcgacgtgctggccgacggt
ccctcgaccgacatcggtgaactggcgctcggccagaacatgctggtcgcgttcatgccg
tggaacggctacaacttcgaagactccatcttgctctccgagcgcgtggtggaagaggat
cgttacaccacgatccacatcgaagagctgaccgtgcaggcgcgcgacaccaagctgggt
gccgaggaaatctccgccgacatcccgaacgtgtccgagcatgcgctcaaccgcctcgac
gaatccggcgtggtctacatcggcgccgaagtgcgtgccggcgacatcctggtcggcaag
gtcacgccgaagggcgaggcccagctgacgccggaagagaagctgctccgcgcgatcttc
ggcgagaaggcatccgacgtgaaggacagctcgctgcgcgtgccgccgggcatggacggc
gtggtcatcgacgtgcaggtcttcacccgcgatggcgtggagaaggacaagcgcgcggtg
aagatccaggaagaggaagtccgccgcgtcaagaaggacttcgacgaccagcgcatgatc
ctcgaggccgcgatcttcgcgcgcctgcgcagccagctgatcggcaagaccgcgaacggc
ggtggcggcctgaagaagggcgagaccgtgacgtcgctggtgctcgaccaggcgcgtccg
cgtgactggttccacttcaacatgaaggacgaggacgccgccgaggccatcgaccgcgcg
cagaagcagatcgcgctgcacgagaaggaattcgagcgtcgcttcgaggacaagcgctcc
aagatcgcgcagggcgacgaccttgccccgggcgtgctgaagatggtgaaggtgttcctc
gccgtgaagcgccgcatccagccgggcgacaagatggccggccgccacggcaacaagggc
gtggtgtccaacatcgtgccggtggaagacatgccgtacatggccgacggccagaccgtc
gacatcgtgctgaacccgctgggcgtgccgtcgcgtatgaacatcggccagatcctcgaa
gtccacctgggcctcgcggcgaagggcctggggcgcaagatccaggcgatgctcgatgcc
aaggccaaggtgaaggacctgcgcgacttcctcgaccagatctacaaccacgatgccaag
gcactgggcgaagtccgcgtcgacctgtcgcagttcagcgatgaggaactgctgacgctg
gccggcaacctgaccgacggcgtgccgatggccaccccggtgttcgatggcgcggcggag
tccgagatcaaggcgatgctcgccctggccgacctgccgaccagcggccaggcgcagctg
tatgacggccgcaccggcgaagccttcgaccgcaagacgaccgtcggctacatgcacatg
ctgaagctgaaccacctggtggacgacaagatgcacgcgcgttccaccggcccgtactcg
ctcgtcacccagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggcgaa
atggaggtctgggcgctggaagcctacggcgccgcctacacgctgcaggaaatgctcacc
gtcaagtccgacgacgtgcagggtcgcaaccagatgtacaagaacatcgtggatggcgat
tacgacatggtcgcgggcatgccggagtccttcaacgtgctggtcaaggaaatccgctcg
ctcggcatcaacatggagctggaagaacactga
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integrated database retrieval system
