Lytechinus variegatus (green sea urchin): 121408335
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Entry
121408335 CDS
T11173
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121408335
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121408335
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121408335
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121408335
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
121408335
NCBI-ProteinID:
XP_041455700
LinkDB
All DBs
Position
2:52426714..52490771
Genome browser
AA seq
2396 aa
AA seq
DB search
MNLDSLSLAFSQITNLVANLNKKNYKQSVGEISRLVSHNGPEADRHLLRCLFSYIDFCDG
KSSGKDFYETQLLIQECSLLITKPNFVSTLCFAIDNPLHQQKSLKPSQQFFTQLSKILKL
TSVQEVVFGLALTHSVKPETRSLALQFVKQKLPDLVRAYIDADIRNQQESGLADFSVEIL
QLLLSHLLYRSPDQLGLGTVQLEAFTKTLKKEFPPERVPVVLAPLLYGDKQDIHMDRVIS
DSIAIPKGVMDGSLAELMQEMGYSCCATVEECHKTLVQFGINGLTAGNVAKVIGMMARTH
TGLMDNLPLQSVSGASVWSDGKDKQDQSGQLSTWDVDTFIKVVRELAPHINFKEVVFELD
HPGFYIGDSQALRLVKTALIRGLQQEVFPVEALYTRVWKNFEGQLSWIQQALSQPDIFCF
ADYPCHPVVIDILKAPPEEENRKIATWKSLELVEVLLKLSETGKYEQVKNLFSFPIKHCP
DMLLLALLQVQPTMTPLRLELIAVLMPIFLGNHPNSGIVLHYAWHGQGQSPTIRQIVMHS
MADWYMRGDSDQTRLSRILDVAQDLKALSLLLNATPFLFVIDLACLASRREYLKLDKWMT
DKIREHGESFVQTCVKFLKRRAPQVMGGMPPEPRELPGGGKTGVLPPETIGTMLACLQAC
VSSVSPELAETIMNMVANCGNLLKSRPPPGVMNNQGIPPISPGPGTPIDSLPGMPPLGST
MGTSMGSTMASNMGSTMGSTLGSTMGSTMGSSAPSMTTPNLHPFSSNPLGSSFGQPPQSP
QKTFPMLSGPGPNLGGLINPSQSTSHQSSLHTNSQSTMSQPPKSGAGAIRPGDISNIWPE
LNQSFSPEIDEEANSYFQQIYNQPPNPIMSVDDVLQMLKQFKDSQVTREREVFMCMLRNL
FEEYKFFPQYPERELLITACLFGGVIEQGLVTFMALGMALRYVLEALRKSHNSKMYMFGI
AALDKFKLRLKDFAQYCTHVASIPHFKQFPEHLIEYVTYGQQSMEPPVASRPQPTPTTTT
ATVTTTASSILSTTKPTTATTTVSAIKPIAKAAPKPSIANTTNIDTLLVATPKEEIKEPS
EQVQDKIAFIFNNLSQVNLVQKCEEMKELCLEEHLEWISRYLVLKRASIETNFHTLYSNF
VDQIKLAKLADLVLKETYRNIGVLLASSKSDSNFSDRTLLKNLGHWLGKLTLAKNKPILQ
VDLDMKALILEAYHKGQAELLYVVPFVAKVIESCTKSRIFKPPNPWTMAIMNVLAELHQE
PNLKLNLKFEVEVLCKAFSITMDDLKPGMYLKDLEMVGLIPHKLTTSKKFMEGGAFGISV
GMGQDNPPSSVGGLAVPLPTVPNSSLVGDQGIASAVPTPPTPSLPATPAPVPQFSFQDLN
TSALTGIAPLTSVNAQLAIFQAHPQLRNCVRPAVERAVQELVHPVVDRSIKIALSTCEQI
VKKDFALDPEENRMRLAAHHMVRNLTAGMAMITCHEPLIFSIINNFKLSCIAALKGGTPQ
QKELIEQAASVVANDNVELACCFIQKCAVEKAIPEMDRRLATEIELRKHARNENRRYCDP
VVLTYQAERMPEQIRLKVGGVPQGQIAVYEEFARSIPGFLPTPEANQPPGFLAKLTQSYA
VDEITQIYDKCITEIDQHLQFINQVMPQSQHVQILHALLESVMVARNSREIVTALACLQK
AVEGLLEGYTVSSLDPNAALRYRDAHILVLKSLQDQRAYGPQWTNKQVTRVVCETNSERK
YNLDAIEQLLRTHLVNLQTIDMHIATSMENGLNYGAVGFAMSVVKRFLIDEKQSNVLNEA
DLYNTLHVLARIATQSPNPPEGLPQLIELVRQNHDPAFLDKAPGGPTSMMHSGISQAREF
DDPPGLREKTEYLLREWVNMYYSPAGGKDSTKAFSAFVNQMHQQGILKTDDLITRFFRLS
IELCVDVCYRALAEQVHSQALTRAKCFQTLDAFVRLIALLVKHSGDATNPVTKINLLNKV
LGIVAGVLLQDHEVRQTEFHQLAYHRIFSMLLLELNAPEQILEAINFQVMSAFCNALHVL
RPSKAPGFVYAWLELISHRIFIARMLGMLPQQKGWPMYAGLLTGLFKFMTPFMRNAELPK
HLALLYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPDPF
TPNLKVDMLADIAHHPRILTNYVTVIQPASFKKDLDSYIKTRSPVTFLSELRSHIQVSQE
PGQRYNVSLMNALVLYVGMQAINYIQSKGSTPSMSTITHSSHMDIYQNLVVDLDTEGRYL
FLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLIT
FIELIRNHHFKFWSHEFVHCAPEIKKLFESVARSCMQQKGSAQPGIARDNAEAHET
NT seq
7191 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggattccctgtcgctggccttttctcagattaccaatcttgtggccaatctc
aacaaaaagaattacaagcaaagtgtcggggaaatctctcgcctcgtttctcacaacggg
ccagaggcagacaggcacctgctgcgctgcctcttctcctacattgacttttgtgatggt
aagagcagcggcaaagacttttatgagacgcagctgctgatacaggagtgctctttactt
atcaccaaacctaattttgtttcaactttgtgctttgctatcgacaaccctctgcatcag
cagaagagtctaaagccaagccagcagttcttcacccaactgagcaaaatcttaaagctc
acttcagttcaagaagttgtctttgggcttgctctgacacactcagttaaacctgaaacc
agatcactagctctccagtttgtaaagcaaaagttgcctgatcttgtccgtgcctacata
gatgctgacatacgtaaccagcaagagagtggattagcagacttttctgtggagatactc
caactgctcttgagccatctactttacagatcacctgatcagctaggacttggaactgta
cagctagaggctttcaccaagactctcaagaaagaatttccgcccgagcgagtaccagtg
gtacttgctcctctgttatatggtgacaaacaagatattcatatggacagagtgatttct
gacagcattgcaatacctaaaggagttatggatggctctctggcagagcttatgcaggag
atggggtacagctgttgtgccacggtggaggaatgccacaagacacttgtccagtttggc
atcaatggattgaccgctggcaatgttgccaaggtcatcggtatgatggccaggacccat
acaggcctcatggataaccttcctctacagtcggtgtctggggctagtgtctggagcgat
ggcaaggacaaacaagaccagtctggccagctctccacttgggacgttgacaccttcatt
aaggtggtaagagagcttgccccgcacatcaacttcaaggaggttgtgtttgaactggat
catccaggcttctacatcggggacagccaggcactgaggcttgtgaagactgcattgatc
agaggtcttcagcaggaggtcttccctgtagaagccctctacactagagtatggaagaat
tttgaaggacagttatcatggatccaacaagccctatcccagcctgatatcttctgcttt
gctgactatccttgtcatccagttgtcattgacattctcaaggcaccaccggaagaagag
aacagaaaaattgctacatggaaatcccttgagctggttgaagtgttgctgaagctctca
gagactgggaagtatgaacaagtcaagaaccttttcagctttcccatcaaacattgtccc
gatatgctgcttcttgctttactacaagtacagccgacaatgactccattacggttagag
ctgatagcagttctcatgccaatattccttgggaatcatccaaactccggcatcgtactg
cactatgcgtggcatggacaggggcaatcacccacgattcgtcagattgtgatgcactcc
atggctgattggtacatgcggggcgacagcgaccagactcggctgtcaaggatccttgat
gtggcccaggatctcaaagccctgtctctcctcctcaacgcaacaccattcctctttgtg
attgacctagcctgcctggcatcacgcagagagtacctcaagcttgacaagtggatgaca
gacaagatcagagaacatggggagtcctttgttcagacatgtgtgaagtttctgaagaga
cgtgccccccaggtaatgggaggaatgcccccagagcccagggagttgccaggagggggt
aagacgggggtgttaccacctgaaaccattgggacaatgttagcctgtctacaagcatgt
gtcagttctgtgtcacctgagcttgctgaaaccatcatgaacatggtggctaactgtggt
aacctgctcaagtctcgtcctccaccgggagtaatgaacaaccaggggattcccccaatc
tccccaggaccaggcacaccaattgactcgctacccggcatgcctcctctaggctctaca
atgggtacatccatgggctccaccatggcctcaaatatgggctccacgatggggtccacc
ttggggtcgacgatgggatcgacaatggggtcgtctgcaccgtccatgaccacgcccaac
ctacaccccttcagctcaaaccctctgggatccagcttcggccagcctcctcagtcgcca
cagaaaacattcccaatgctgtcaggacccggtcccaacctgggtggactcatcaatccg
tcccagtctaccagtcatcaatcttcattgcacactaacagtcaatcaacaatgagccaa
ccccctaaaagtggtgccggtgctataagaccaggtgatatatcaaatatatggcccgag
ttgaaccagtcattttcaccagagattgacgaggaagcaaacagctactttcaacagata
tacaaccagcctccaaaccctatcatgtcagtggatgatgttctgcaaatgcttaaacaa
ttcaaagattcacaagtcaccagggaaagggaggtattcatgtgtatgctgaggaatcta
tttgaggaatacaagttctttcctcagtatcctgagagagaactcttgattactgcttgt
ctgtttggaggtgtcattgaacagggtttagtcacgtttatggctctaggaatggctctg
cgttatgttctagaagccctcaggaagtctcacaacagcaagatgtacatgtttggtata
gcagcactagataagttcaagctacgtctcaaagactttgcccagtactgtactcatgtt
gcttccatccctcacttcaaacagtttccggagcatctcattgagtatgtgacatatggt
caacaatccatggaaccaccggtagcaagcagaccacaacccacacccacaactactaca
gcaacagtaacaacaacagcatcatccatactgtcaacaacaaagcctacaacagcaact
accaccgtgtcagccatcaaacccattgccaaagcagctcctaagccttccattgctaat
accaccaacattgatacactcctggtggctacacctaaggaagagatcaaagaaccttca
gaacaagtccaggacaagattgctttcatcttcaacaacctctctcaggtcaacctagta
cagaagtgtgaagaaatgaaggagctttgtttggaggaacatcttgagtggatatctcgt
tacctggtcctgaagagggctagcatcgagacaaacttccacacactctactctaacttt
gtagatcagatcaaactcgctaagctggcagacctggtgctaaaggaaacctacaggaat
atcggggtgctgctagcatccagtaaaagtgattcaaacttctcagataggacccttttg
aaaaatcttggacattggcttggaaaactcactttagcaaagaacaaacctatcttacaa
gtggatctggatatgaaagcccttatcctagaggcctaccacaagggccaggctgaactc
ttgtacgtggtgccctttgtggccaaagtgattgagtcttgcacaaagagtcgcatcttc
aagcctcctaacccctggacgatggccatcatgaatgtcctggcggagcttcaccaggaa
cccaatctcaaactcaacctcaagtttgaagtagaagttctctgcaaagccttcagtatc
accatggatgacttgaagcctggtatgtacctgaaggatctggagatggtcggtctcatc
ccgcacaagttgacgacttccaagaagttcatggagggtggggcgtttggtatctctgtg
ggtatgggtcaggataaccccccttcatcagtaggtggcttggccgtgccccttcctacc
gtacccaacagttcacttgtaggtgatcaagggatcgcttcagctgttcctacaccgcct
actccatcattgcctgccacacctgcacctgttcctcagtttagcttccaagatcttaac
acgtcagccctgacaggaatcgctcctcttacatccgtcaatgcacagttggcgatcttc
caggcccaccctcagttgcgtaactgcgtacgcccagctgttgagagggcagtccaggag
ctagtgcatccagtggttgatagatccatcaagatagctctcagcacctgtgaacaaatc
gtcaagaaggactttgccctagatcctgaggagaatcgtatgcgtcttgctgctcaccac
atggtgcggaacttgacggctggtatggccatgatcacctgccatgaacctctcatcttc
agtatcatcaacaacttcaaactatcctgtatagcagctctcaagggtggtactccacag
cagaaggagctgatagaacaggcagcatctgtggttgccaacgacaacgtagaactggcc
tgttgcttcattcagaagtgtgctgtagagaaggccattcctgagatggaccgcagactt
gccacagagattgagctgaggaagcatgcgaggaacgagaatcgtcgctactgtgatccg
gtggttcttacctatcaggctgagaggatgccagaacagattagactcaaggttggagga
gtccctcaaggtcagatagccgtctatgaagagtttgctcgtagcattccaggattccta
cctacaccagaagcaaaccaaccaccagggtttttagccaaactcacccagtcatatgct
gttgatgagatcacacagatctatgataagtgcatcacggagatcgatcaacatcttcag
tttatcaaccaagtgatgcctcaatcccagcatgtccagatcttacatgctctcttagaa
tcagtcatggtagccaggaactccagggagattgtcacagctcttgcttgcctccaaaag
gctgttgaaggtcttctagaaggctacacagtaagttctctagaccctaatgcagccttg
cgctaccgagatgcacatattctagttctcaagtctcttcaagatcagagggcctatggt
ccacagtggacaaacaaacaggtcacgagagttgtctgtgagacgaatagcgagaggaag
tacaaccttgatgccattgaacagctgctgaggacacaccttgtcaaccttcaaactatt
gatatgcatattgccacttcgatggagaatggccttaactacggtgctgttggtttcgcc
atgagcgtagtcaagcgattcctcatcgatgagaaacaaagcaacgtgctgaatgaggcc
gatctctacaacacactgcacgtactggctaggattgcaacgcagagtcctaatccacca
gagggcttacctcaattgatcgagcttgtgagacagaaccacgaccctgcctttctggac
aaagcacccggcggcccgacctccatgatgcactccggtatctcccaggctcgtgagttt
gatgatccaccgggcctcagggagaagacagaatacctcctgagggagtgggtcaacatg
tactactcaccggccggtgggaaggacagcactaaagccttctcggcgtttgtcaatcag
atgcaccaacagggtatcctgaagacagacgacctgatcacacgattcttccggctctcc
attgagctgtgtgtggatgtttgctaccgggccttggcggaacaggtccacagccaggcc
ctgaccagagccaagtgcttccagaccctggatgcctttgtccgtctcatcgcgcttctc
gtcaagcactccggagacgctaccaacccagtcaccaagatcaatcttctcaataaggtg
ttgggtatcgtagcaggtgtattgcttcaggatcacgaggtacgccaaacagagtttcat
cagttggcctaccatcgtatctttagtatgcttctcttggaactcaatgctccagagcag
atcctagaggccatcaacttccaagtcatgtcggctttctgcaatgctcttcatgtactg
agaccatctaaagcaccaggttttgtatatgcttggttagaactgatctcacatcgtatc
tttattgctaggatgttgggcatgcttccacaacagaagggatggccgatgtatgctggt
ctactaacaggtctcttcaagttcatgacaccattcatgcgcaatgcagaacttccaaag
cacctagctctactttacaagggtactctgagagtgctgctggtgcttctacacgatttc
ccagagttcctttgcgattaccattacggcttctgtgacgtcatcccaccaaactgtatc
cagatgcgtaacctgatcctatcggcattccctcgtaacatgagactgcctgacccattc
acacctaacctcaaggttgacatgttagcagacattgctcatcatccccgcatcctgacc
aactatgttactgtcatccagcctgcctcatttaagaaggatctggactcctacatcaag
acccgtagccctgtcaccttcctctctgagctacgcagtcatatccaggtctcacaggaa
ccgggtcaacgttacaacgtatccctgatgaacgccctggtgctgtacgtgggtatgcaa
gccatcaactacatccagagcaagggaagcacgccctctatgagcaccatcacgcattcc
tcccatatggacatataccagaacctggtcgtggatcttgatacagaaggtcgttacttg
ttcttgaatgccattgccaatcagctacggtaccctaacagccatactcattacttcagc
tgtacgcttctctacctgtttgctgaggctaacactgaggctattcaggagcagatcaca
agagtgctactggagcgcttgatcgtgaacagaccccacccctgggggcttctcatcaca
ttcatcgagcttatccgtaaccatcacttcaagttctggagccatgagtttgtccattgt
gcccccgaaatcaagaagctgttcgagtctgtggctcgtagctgtatgcaacaaaagggc
tccgctcaaccaggcatagccagagataatgcagaagcacatgaaacgtaa
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integrated database retrieval system
