Lytechinus variegatus (green sea urchin): 121415382
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Entry
121415382 CDS
T11173
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
lvg Lytechinus variegatus (green sea urchin)
Pathway
lvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121415382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lvg03019
]
121415382
Messenger RNA biogenesis [BR:
lvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
121415382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_19
TPR_14
TPR_16
TPR_1
TPR_2
TPR_12
TPR_CcmH_CycH
TPR_8
TPR_17
TPR_11
TPR_9
TPR_6
ANAPC3
ARM_TT21_5th
ARM_TT21_C
T7SS_EccA1_N
ARM_TT21
DUF5063
TPR_COPA_B
TPR_20
COG4_N
HemY_N
Alkyl_sulf_dimr
Motif
Other DBs
NCBI-GeneID:
121415382
NCBI-ProteinID:
XP_041464511
LinkDB
All DBs
Position
5:complement(13012219..13066283)
Genome browser
AA seq
1550 aa
AA seq
DB search
MAAGGGSKELKAPIKRAKEAIKVKDYQQALEHSKHALSVDPKHYNALIFLGKSTTELGQG
DEAEKAYKKAADIDPKQTLAWQGLAALYEKIDTPQNSENLVDVYQELMKLSDDKTKETQI
AEKLADLYQKLSKPLQACEVLHSLILKSEDNEYKIEKWSKIIQLLSKQASLDESNTNLLK
EAYTVVMESGNIENESLRELYKGYIDLQFKDREVDVGALKATCSKMCEKFPSEIYPLEKM
TEMTLIETFALKTSDDWSVYGQLLELDKDNVWAVIGQGQLKLTSGDYKAAKEYLTNASQK
LPGFPLSWLFLARCQLSLHDYQAAEHSAEQGRRALKTFKHPALSEAVRLHEAFRILQGKA
CIDSGLMAQGLRAVEIFKKLLPEAIDKDSIYKPLTLAHLLVGDLASAQQSFEMISSDQDQ
SDTIALGGWLKFHQGEFSDAQEKLQVALAREEKAVYHYWLGRVYWALGGQAQLDKSKCNS
SLLKAAKLDPNYSDSFLYIGHYYMQIGKDTVRAKRCYKKAYDLNPANEAAAKSLGDVCDL
LDEKDEAISVYTKVTSRAALGEAKWAWLRLGLVQLKAGNATEAVESFQAVLRADPDDIHC
QECLAEAYLSRGSHTAALKTFSRIVEVEPNSTYALFKIGHIKQTVGLYSEAVSDYQAVLS
KTPDYVPALSGQGEAYILMAKAALHEFFNARCVSYIQDAITVLTRAVLLRSDICGLWKLL
GDACTVLAPLHNNLIRISVNGAFTCGDEKKIETLDKGELLALGGRCYGRAVERQKGCASL
WHDLGINFYHQYQYTQDVKMANKALQFIRKAIKLDESNHMHWTALGVVAASKAVDDPKLA
QHAFIKSIQLESKNVVAWTNLGTLYLSHGNLKLANEAFAVAQSLEPNYVQCWIGQSMLAE
TLGSQEAMDLYRHTTELTTHVEGGLGYADLVCSALLDPSLNKDSEVYRYNVIQMAAIPAA
DAAIGKVADRLQISGEAHTLHGILQERQGLHRAAEVSYKQALEVVKTQGDAKQINIALSN
HGRALNSIGKAEEARDTLRSISPLVDIQDILQLALALYRNKEWQEAYMAYEQALQLVSSD
VERSQILTALAMVSCQSGDLATAKTLLFQSSQLSSPCREGLVALSALGLQTQDMVLTNAA
LAELAKQPNQQDLVHQTTVLASAAHYLQGDLPAMSKHLMKAVKDYPNDNQLWNLAAELML
LLDATNVEFTLTCSEKARLLVPTHKNVLQVNAAAKLCSGCHGNPSRGRLSPSLIAAQKAV
HAMPGDMNNWALLGAACSAQTTYQHVHQDKWNLIDVNLQVAKFLLQTSQADSKLAAWVSL
HNVFCLLQSQQWKEAKDLSQRFLEWCNYGKETSDDLMLLHTLSDWMATGKKSNLKTLREA
ITASQSPLAWQTLGKIYTESMMMAAAEACYKHCLSLISGRKQITILHQLAYLAILGLKIA
DDSGSWSELGQQMIDELNRQAPKEAMSHLLKGLLYKHLGNQDRQSRREFQHGMESNGKPG
GEDYTRSVIRLQLVEALMKKDKEASKALVNEALEKQDPFSERLQIMISAL
NT seq
4653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaggaggtggaagcaaggagcttaaagctcctatcaagagagctaaagaagcc
atcaaagtaaaggattatcagcaggctttagaacattcgaaacatgctttgagtgtggat
cctaagcattacaatgccttgatatttcttggtaagtctaccactgagcttggacaggga
gatgaagcagagaaagcatataagaaagcagcagacatagatcccaagcagactctagca
tggcagggactggctgcactctatgagaagatcgataccccccaaaactcagaaaacctt
gtggatgtgtatcaggagcttatgaaactatcagatgataagacaaaagaaactcagatt
gctgaaaaactagcagacctctatcaaaaacttagcaaacctttgcaggcatgtgaagtc
ctccattccttgatcttgaaatctgaagacaatgaatacaagattgagaagtggagcaag
ataatacaactcctatcaaaacaggcatcacttgacgagagcaataccaacctgctaaag
gaagcatatactgtggtcatggagtcaggcaacattgaaaatgaatcactgagagagctc
tacaagggatacattgacttacaatttaaggacagggaagttgatgtaggtgcgctaaag
gcaacatgttctaagatgtgtgaaaagtttccatcagagatatatcccctggagaaaatg
acagaaatgactctgattgaaacatttgcattgaagacatctgatgactggtcagtctat
ggtcagttactagaactggataaggacaatgtatgggccgtgattggtcaaggtcaactt
aaactgaccagtggagattacaaggcagctaaggagtatctcacaaatgcatcacaaaag
ctacccggctttccacttagttggctattcttggctcggtgccaactcagtctccatgat
taccaagcagccgaacattcagctgaacagggtagaagagctctgaagaccttcaagcat
ccagcactcagtgaggcagtaagattgcatgaagcattcagaattctccagggaaaagct
tgcatcgactcgggccttatggcacagggcctaagggctgtagaaatatttaaaaagctg
ttacctgaggctatcgataaggactccatatacaagccgttaaccttggcacatcttctt
gtaggggacttggcgagtgcacagcagagctttgagatgatatcttctgatcaagaccaa
agtgatactatagctttaggtggctggttgaagtttcatcaaggggaattttctgatgcc
caggagaaattacaggtggctctagctcgggaagagaaggcagtctaccattactggctt
ggcagagtgtactgggctttgggaggtcaagcacagctagataaatctaaatgcaattca
tccctactcaaggctgccaaacttgaccccaactactcagattccttcctttacattgga
cattactacatgcagataggcaaagatacagtgagagcgaaacgttgttacaaaaaagcc
tatgatttgaatcccgctaatgaagctgcagctaaatccctgggtgatgtgtgtgactta
cttgatgaaaaggatgaagctatttctgtctacacaaaagtgaccagtcgggctgctctg
ggtgaggcaaagtgggcgtggctaagattaggtcttgttcaactcaaagcaggcaatgcg
acagaagctgtagaaagctttcaagcagttctgagagctgatcctgatgacatacactgt
caggaatgccttgctgaagcttatttgagccgaggcagccacactgctgcattaaaaaca
ttctctcgcattgtagaggtggaaccaaattcaacatatgctttattcaagattggtcac
atcaagcagactgttggtctttactctgaggcagtgtcggactatcaggccgtcctcagc
aaaacacctgactatgtcccagcgctgagtggccaaggtgaggcatacatcttaatggcc
aaggctgctcttcatgagttcttcaatgccagatgtgtttcttacatccaggatgcgatc
acagtcttgacaagagctgtactacttcgttctgatatctgtggcttgtggaaactgttg
ggagacgcatgcactgtgctagctccactacacaacaatctcatcaggatttcagtgaat
ggtgcttttacctgtggagacgagaagaaaattgaaactttagacaaaggagaactgctt
gccctgggtgggaggtgttatggtcgagctgtagagaggcagaaggggtgtgctagcttg
tggcatgatctaggcatcaacttctatcatcagtatcagtacactcaggatgtgaaaatg
gcaaataaagcattgcagtttatccggaaagccatcaagctagatgaatctaatcacatg
cactggactgcattgggtgttgttgcagcatcaaaagctgttgacgacccaaaacttgca
caacatgccttcatcaaatcaattcaattagaatcaaagaatgttgtagcttggaccaac
ctaggaaccttgtacctatcccatgggaacctaaagcttgctaatgaagccttcgctgtt
gcccagtctttggaaccgaactatgtgcaatgctggattggacagagcatgctagctgag
acgttagggagccaagaagccatggacctctacagacataccacagagttaactacacat
gttgaaggtggccttggctatgctgatttggtgtgtagtgcactcctagacccatcactc
aacaaggattctgaggtgtacagatacaatgtgattcagatggctgccattcccgctgct
gatgccgcaataggcaaagttgcagatcgtctccagattagtggagaagctcacacttta
catggaatattacaagaaagacaaggtctacatcgagctgcagaagtgtcctataaacaa
gcactagaggtggtaaagactcagggagatgcgaagcagatcaacatcgccttgtctaat
catggtagagctttgaactccattggtaaagcagaggaagccagagataccttacgttct
atcagtcctctggttgatattcaagacatccttcagcttgctctggccctctatcggaac
aaggaatggcaggaagcctatatggcttatgagcaagcattgcagttagtttcttctgac
gttgagagatctcagatcctgacagctcttgccatggtgtcctgccaatctggagatctt
gccactgctaaaaccttgctctttcaaagttcccagctgtcgtccccctgtcgtgaaggg
ctagtagcactgagtgccctgggactgcagacccaggatatggtcctcaccaatgcagcc
ctggctgagcttgccaagcagcctaaccaacaggacctggtccaccaaacaacggtcctg
gcctccgctgctcattacttgcagggtgatttaccagcaatgtctaaacacctcatgaaa
gcagttaaagattatcccaatgacaatcagttatggaatctggcagcagaactgatgcta
ctgcttgatgctacaaatgtggagtttacattgacctgttcagaaaaggcaaggcttcta
gtacctacccacaagaatgttcttcaagtcaatgctgcagcaaaactttgctctggttgc
catggtaacccttccagaggtcgtctttctcccagcttgatcgcagcacagaaggctgtc
catgccatgccaggtgatatgaataattgggcccttcttggagctgcttgttctgctcag
acaacataccaacatgtccaccaagacaagtggaatctgatagatgtcaatcttcaagtg
gccaaattcctcttgcaaacaagtcaagcagattctaagctagctgcatgggtgtctctt
cacaatgtattctgcttgttacagagccaacaatggaaggaagcgaaggatctatcacaa
aggttccttgaatggtgtaactatggaaaggagaccagtgatgaccttatgctactacat
accctgagtgactggatggcgacaggaaagaagtctaatctcaaaacactcagagaagca
atcacggcttctcagtcaccactggcatggcagacattaggtaagatctacactgaatcc
atgatgatggctgcagcagaagcttgctataagcactgtctatctctcatcagtggtagg
aagcagatcactatattacatcagttagcataccttgctatcttaggcttgaagatagcg
gatgatagtggttcgtggagtgagcttggtcaacaaatgattgatgaactcaacagacag
gctcctaaggaagctatgagtcacttactgaagggattactttataaacatctaggtaat
caagacaggcaatcaagaagggaatttcagcatggcatggagagcaacgggaagcctggg
ggagaagactacacccgatctgtaataagacttcaattagtagaggctttgatgaagaag
gataaggaagcttctaaggcacttgtaaatgaagccttggagaaacaggatcccttcagt
gaaagactacagataatgatttcagcactttaa
DBGET
integrated database retrieval system
