KEGG   Lytechinus variegatus (green sea urchin): 121424020
Entry
121424020         CDS       T11173                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
lvg  Lytechinus variegatus (green sea urchin)
Pathway
lvg03018  RNA degradation
lvg03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lvg00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    121424020
  09123 Folding, sorting and degradation
   03018 RNA degradation
    121424020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lvg03019]
    121424020
   03041 Spliceosome [BR:lvg03041]
    121424020
Messenger RNA biogenesis [BR:lvg03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     121424020
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     121424020
Spliceosome [BR:lvg03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    121424020
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 121424020
NCBI-ProteinID: XP_041475526
LinkDB
Position
11:complement(17953986..17991187)
AA seq 132 aa
MLPLSLLRTAQNHPMLVELKNGETYNGHLVACDNWMNINLREVICTSRDGDRFWKMPECY
IRGSTIKYLRIPDEVIDMVKDDIVSKGRGRGGGGRGRGRGGSGRGGAFGRGGGRGGGRGD
GKRGGRGGPPKS
NT seq 399 nt   +upstreamnt  +downstreamnt
atgttgcctctttctctattaagaactgctcaaaaccaccctatgctggtggaactgaaa
aatggtgagacatacaacggtcatcttgttgcatgtgataactggatgaatatcaacctt
agagaagtcatctgcacatcaagggatggggaccggttctggaagatgccagagtgttac
atcagaggaagcactatcaaatatcttaggataccagacgaggtcattgacatggtcaag
gatgacatcgtatctaaaggtcgtggccgaggaggcggtggtcgaggaaggggtcgtggt
ggatctggcaggggaggtgcatttggtcgaggtggtggtcgtggaggaggacgaggtgat
ggcaagaggggtggaagaggaggaccaccaaagtcatag

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