Yoonia vestfoldensis: LOKVESSMR4R_00228
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Entry
LOKVESSMR4R_00228 CDS
T04854
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
lvs
Yoonia vestfoldensis
Pathway
lvs03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lvs00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOKVESSMR4R_00228 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lvs03021
]
LOKVESSMR4R_00228 (rpoB)
03400 DNA repair and recombination proteins [BR:
lvs03400
]
LOKVESSMR4R_00228 (rpoB)
Enzymes [BR:
lvs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOKVESSMR4R_00228 (rpoB)
Transcription machinery [BR:
lvs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOKVESSMR4R_00228 (rpoB)
DNA repair and recombination proteins [BR:
lvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOKVESSMR4R_00228 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ART99569
UniProt:
A0A1Y0E831
LinkDB
All DBs
Position
224467..228606
Genome browser
AA seq
1379 aa
AA seq
DB search
MASSFLGQKRLRKYYGKIREVLEMPNLIEVQKSSYDLFLRSGDSDAPLDGEGIKGVFQSV
FPIKDFNETAVLEFVKYELEKPKYDVEECMQRDMTYAAPLKVTLRLIVFEVDEDTGSKSV
KDIKEQDVFMGDMPLMTPNGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDLVFCRIDRRRKLPVTTLLYALGLDQEGIMNAYYNTVDYALDK
KANAWTTKFFPERVRGTRPTYDLVDADTGEIIAKAGEKVTPRSVKKMIDEGKVKNLLVPY
EHIVGKYVARDIINEETGAIHVEAGDELTLEMDKTGDVIGGTLKDLIDAGITSIPVLDID
NISVGGYIRSTMAADKNMNRETALMDIYRVMRPGEPPTVDSASALFDTLFFDGERYDLSA
VGRVKMNMRLDLDADDTIRTLRREDIVACIKALTELRDGKGDIDDIDHLGNRRVRSVGEL
MENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTN
PLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFA
RVNKYGFIETPYRKVVDGKVTDDVQYMSATEEMRHTVAQANASMNDDGSFRNDLVSTRVN
GDYTLAPRENVDLIDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLLQAEAPL
VGTGIEEVVARDSGAAIMAKRAGIIDQVDAQRIVIRATSDLELGDAGVDIYRMRKFQRSN
QNTCINQRPLVKVGDLVQKGQVIADGPSTDLGELALGKNVVVAFMPWNGYNYEDSILISE
RIVRDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGAEVGPA
DILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGDFGTVVEVRVFNRHGVE
KDERALQIEREEVERLSRDRDDERVILDRNIYARLWDIIGGKTAAKGPKGFKAGSVVTEE
SVSELSRGQWWQLAMEDEDDAKIVEALNQQYEIQKRAMDARFEDKVEKVRRGDDLPPGVM
KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM
NVGQILETHMGWAARGLGIHIDEALGEYRRSGDLTPVREAMKIAYGDDVYDEGIAGMGED
DLVEAAGNVTRGVPIATPVFDGAKEADVNDALRRAGFDTSGQSVLFDGRTGEQFSRKVTV
GVKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq
4140 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctccttccttggtcagaaacgcctgcgcaagtattacggcaaaatccgtgaa
gtgcttgaaatgccgaacctcatcgaggttcagaaatcttcctatgatctgttcctgcgt
tccggcgacagtgacgcgccgctggacggcgaaggcatcaaaggtgtgttccaatcggtt
ttcccgatcaaggacttcaacgaaaccgccgtgctggaattcgtgaaatacgagctggaa
aagcccaaatacgacgtcgaagaatgcatgcagcgcgacatgacctatgccgcaccgctg
aaggtgacgctgcgtctgatcgtgttcgaagtggacgaggacacagggtccaaatcggtc
aaggacatcaaggaacaagacgtgttcatgggcgacatgcccctgatgacgccgaacggc
acattcgtcgtgaacggcacagagcgtgtgatcgtgtcccagatgcaccgcagccccggc
gtgttctttgaccatgacaagggcaagacccattcgtctggcaaattgctgttcgcctgc
cgcatcattccctatcgcggcagctggctcgatttcgaattcgacgccaaggatctggtg
ttctgccggatcgaccgtcgtcgcaaactgcctgtgaccaccctgctttatgcgctgggg
ctggaccaggaaggcatcatgaatgcctattacaacaccgtcgattacgcgctggacaaa
aaggcgaatgcctggacaaccaagttcttccccgagcgcgtgcgcggcacccgtccgacc
tatgacctggtcgatgccgataccggcgagatcattgcaaaggccggcgaaaaggtgacc
ccgcggtcggtcaagaagatgatcgacgaaggcaaggtcaagaacctgctggtgccttac
gaacatatcgtcggcaaatatgtcgcccgcgacatcatcaacgaagaaaccggtgcgatc
catgtcgaggccggtgacgagctgacgctggaaatggacaagaccggcgatgtgatcggc
ggcaccctgaaagacctgatcgatgcgggcatcacctcgatccccgtgctggacatcgac
aacatctctgtgggtggctacatccgcagcacgatggcggccgacaagaacatgaaccgc
gaaaccgcgctcatggatatttaccgcgtcatgcgccctggtgaaccaccgaccgtggat
tccgcatcggcgctgttcgacacgctgttctttgacggtgaacgctatgacctgtccgcc
gtgggccgcgtcaagatgaacatgcgtctggaccttgatgccgatgacacgatccgcaca
ttgcgccgtgaagatatcgtcgcctgtatcaaggcgctgaccgaattgcgcgacggcaag
ggcgacattgacgacatcgaccaccttggcaaccgccgtgtgcggtccgtgggcgagctg
atggaaaaccagtatcgcgtcggcctgctgcgcatggaacgtgcgatcaaggaacgcatg
tcctcggtcgagattgacacggtgatgccgcaggatctgatcaacgcgaaacctgctgcc
gctgcggtgcgcgaattcttcggctctagccagctgtcgcagttcatggaccagaccaac
cccttgtccgaggtgacgcataagcgtcgcctgtccgcacttgggcccggcggtctgacc
cgcgaacgtgccgggttcgaggtccgtgacgttcacccgacccattatggccggatgtgc
ccgattgaaacgcccgaaggtccgaacattggtctgatcaactcgctggccactttcgcc
cgcgtgaacaaatacggcttcatcgaaacgccctaccgcaaggtcgtcgacggcaaggtg
acggatgatgtgcaatacatgtccgcgaccgaggaaatgcgccacaccgtggcacaggcc
aacgcgtcgatgaatgacgatgggtcgttccgcaacgatctggtctcgacccgcgtgaac
ggcgattacacgctggccccgcgcgaaaatgtggacctgatcgacgtgtcgccgaaacag
ctggtttcggtcgccgcctcgctgatcccgttccttgaaaacgacgacgccaaccgcgcg
ttgatgggctcgaacatgcagcgtcaggctgtgcctttgctgcaggccgaggcgccattg
gtcggcaccggcatcgaagaagtcgtggcgcgcgatagcggcgctgcgatcatggcgaaa
cgtgccggtatcatcgaccaggtcgatgcgcagcggatcgtgatccgtgcgacatccgat
ctggaactgggtgatgcgggcgtcgacatctaccggatgcgcaaattccagcggtccaac
cagaacacctgcatcaaccagcgtccgctggtgaaggtcggcgatctggtccagaaaggt
caggtcatcgccgatggcccgtccaccgatctgggtgaattggcgctgggcaagaacgtg
gtcgtcgccttcatgccgtggaacggttacaactacgaagactcgatcctgatctccgaa
cgcatcgtgcgcgatgacgtcttcacctcgatccatatcgaggaattcgaagtcgccgcg
cgtgacacgaagcttgggccagaggaaatcacccgcgacatccccaatgtcggcgaggag
gctttgcgcaacctcgacgaagcgggcatcgtctatatcggggccgaggttgggcctgcg
gatattctggtcggcaagatcaccccaaaaggcgaaagcccgatgacgccggaagaaaag
ctgctgcgcgccatctttggtgaaaaggcatctgacgtgcgtgacacatccttgcgcctg
ccgcccggtgactttggcaccgtggtcgaggtgcgtgtgttcaaccgtcacggcgtggaa
aaagacgaacgcgcgctgcagatcgagcgtgaagaagtcgaacgcctgtcgcgcgaccgc
gatgatgaacgtgtcattctggaccgcaacatctatgcccgtctgtgggatatcatcggg
ggcaagacagctgccaaagggccaaaaggcttcaaggcggggtctgtcgtcaccgaagag
agcgtgtccgagctgagccgtggccagtggtggcagctggcgatggaagacgaggatgac
gcgaaaatcgtcgaggcgttgaaccagcaatatgaaatccagaaacgcgcgatggatgca
cggttcgaggataaggttgaaaaggtccgtcgcggtgacgatctgccgccgggtgtgatg
aagatggtcaaggtcttcgtcgcggtgaagcgcaagctgcaaccgggcgacaagatggcc
ggtcgtcacggcaacaagggcgtcatttccaaggttgtgccgatggaagacatgccgttc
cttgcggatgggacaccggtggatttctgtttgaacccgctgggcgtgccgtcgcgcatg
aacgtcggtcagatccttgaaacccacatgggctgggccgcacgcggtctgggtatccat
atcgacgaagctttgggggaataccgccggtccggcgatctgacccctgtgcgcgaggcc
atgaagatcgcctatggtgatgatgtctatgacgagggcatcgccggcatgggcgaggat
gatctggtcgaggctgcgggcaatgtcacgcgcggtgtgccgattgcgacccccgttttc
gacggggcgaaagaggctgacgtgaacgatgcgctgcggcgtgccggtttcgacacttcg
ggtcagtcggtcctgttcgacggtcgcactggtgaacaattcagccgcaaggtgacggtg
ggtgtcaaatacctgctgaaactgcatcaccttgtggatgacaaaatccacgcgcgttcc
accgggccttacagccttgtcacgcagcagcctctgggtggtaaagcccagttcggcggc
cagcgtttcggggaaatggaagtctgggcattggaagcctatggcgcggcctacacgttg
caggaaatgctgacggtcaagtcggacgacgtggccgggcggacgaaagtctatgaaagc
atcgtcaagggcgaggataattttgaggctggcgtgcctgaatccttcaacgtgctggtg
aaagaagtccgtggtctcgggctcaacatggaactcctggatgcggaggatgaggaatag
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