Lysinibacillus sp. YS11: LBYS11_00025
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Entry
LBYS11_00025 CDS
T05299
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
lys
Lysinibacillus sp. YS11
Brite
KEGG Orthology (KO) [BR:
lys00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lys03032
]
LBYS11_00025 (gyrB)
03400 DNA repair and recombination proteins [BR:
lys03400
]
LBYS11_00025 (gyrB)
Enzymes [BR:
lys01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LBYS11_00025 (gyrB)
DNA replication proteins [BR:
lys03032
]
Prokaryotic type
DNA Topoisomerases
LBYS11_00025 (gyrB)
DNA repair and recombination proteins [BR:
lys03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LBYS11_00025 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Phasin_2
DUF5321
Motif
Other DBs
NCBI-ProteinID:
AUS84852
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Position
4206..6140
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AA seq
644 aa
AA seq
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MKAVAIENEGLQNQAYEADQIQVLEGLEAVRKRPGMYIGSTSSKGLHHLVWEIVDNSIDE
ALAGFCTDIKVTIEKENWIRVEDNGRGIPVSIQEKMGKPAVEVIMTVLHAGGKFGGGGYK
VSGGLHGVGASVVNALSVETIVQVHREGHIHEIKFERGKTVQELMVIGDTDHNGTTTRFK
ADPEIFKETTVYEYDILAHRIRELAYLNRGIKITIADEREEEIRSTTYHYEGGIRSYVEH
LNQSKEPIHDPIDVLGEKDGITVEIAMQYNAGFSSNIFSFANNINTYEGGTHESGFKTAL
TRVINDYARKSGLLKESDANLTGEDVREGLTAIVSVKHPDPQFEGQTKTKLGNSEVSQIT
NSLFSDGFERFMLENPTVARKIVEKGLMAARARVAAKKAREFTRRKNALEVSSLPGKLAD
CSSTNPADCEIYIVEGDSAGGSAKSGRDRHFQAILPLRGKILNVEKARLDKILSNAEIRA
MITAFGTGIGEEFNLEKARYHKIIIMTDADVDGAHIRTLLLTFFFRFLRPLIEAGYIYIA
QPPLYQVKQGKHIEYCYDEETLKEILERLPKMPKPNVQRYKGLGEMNAEQLWETTMDPEY
RTLLQVELDDAIKANQAFERLMGDEVEPRRQFIEENAVYANLDI
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccgtggctatagagaacgaaggtttacaaaaccaagcttatgaggccgatcag
atacaggtattagaaggtttagaagcagtacgtaaaagaccagggatgtatatcggttca
actagctctaaagggcttcaccatttagtatgggaaattgttgataatagtatcgatgaa
gcacttgcaggattttgtacagatatcaaagtaacaattgaaaaagaaaactggattcgt
gtagaagataacggtcgtggtattccagttagtattcaagaaaagatgggtaagcctgct
gttgaagttattatgactgttttacatgctggtggtaaatttggcggtggaggctataaa
gtttctggtggtcttcatggagttggagcatcagtagtaaatgcactttctgttgaaaca
attgttcaagtacatcgtgaaggtcatatccatgaaataaaatttgaacgtggaaaaaca
gttcaagagttaatggttatcggtgacacagatcataatggtacaacaactcgttttaaa
gctgacccagaaatatttaaagaaactactgtttatgaatatgatattttagctcatcgt
attagagaattggcttatttaaatcgtggtattaagattacgattgctgatgaacgtgaa
gaagagattcgctcaacaacataccattatgaaggtggtattcgttcttatgttgagcat
ttaaatcaatctaaagagccaattcatgatccaattgatgttcttggagagaaggatggc
atcacagtagaaattgctatgcaatataatgctggattctcttctaatattttttcattt
gctaataacattaatacgtatgagggcggtacacatgagtcagggtttaaaacagccctt
acacgcgttattaatgactatgcacgaaaaagtggattactaaaagaatctgacgctaat
cttacaggtgaggatgtacgagaagggttaacagctatagtttctgtgaaacacccagat
ccgcaatttgaaggacaaacaaaaacaaagttagggaattcagaagtaagtcaaattacc
aattctttgttctcagatggctttgagcgttttatgttagaaaatccaacggttgcacga
aagattgtggaaaaaggattaatggcagcccgtgctcgtgtagctgcgaaaaaagcacgt
gagtttactcgtcgtaaaaatgccctcgaagtatctagcttaccgggtaaattagctgac
tgttcttctactaacccagctgattgtgaaatttatattgttgagggtgattctgccggc
ggttcggctaaatctggacgtgatcgacacttccaagcaattttacctttacgtggtaaa
atccttaacgttgagaaagctcgtctagataaaatcttatcgaatgcggaaatccgtgcg
atgataacagcattcggcactggtattggtgaggagtttaatttagagaaagctcgttat
cataaaatcattatcatgacagatgccgatgtcgatggggcacatattcgtacattactt
ttaacattcttcttccgtttccttcgaccacttatagaagcaggctatatttatattgca
cagccaccactttatcaagtgaaacaaggtaaacatattgagtattgctatgatgaagag
acattaaaagaaattttagaacggctaccaaaaatgccaaagccaaatgtgcagcgttat
aaaggtcttggagaaatgaacgctgagcagctttgggaaacaacaatggatcctgagtac
cgcacattattacaagtagaattagatgatgcaattaaagcaaaccaagcatttgaacgt
ttaatgggcgatgaagttgaacctcgtcgtcaatttatcgaggaaaatgccgtatacgct
aatttagatatctaa
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