Macrococcus sp. IME1552: BHM04_12250
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Entry
BHM04_12250 CDS
T05070
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
macr
Macrococcus sp. IME1552
Pathway
macr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
macr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BHM04_12250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
macr03019
]
BHM04_12250
03009 Ribosome biogenesis [BR:
macr03009
]
BHM04_12250
Enzymes [BR:
macr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BHM04_12250
Messenger RNA biogenesis [BR:
macr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BHM04_12250
Ribosome biogenesis [BR:
macr03009
]
Prokaryotic type
rRNA helicases
BHM04_12250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
GerD
Motif
Other DBs
NCBI-ProteinID:
ATD31912
LinkDB
All DBs
Position
2365657..2367174
Genome browser
AA seq
505 aa
AA seq
DB search
MQKFRDLGISEPTINALEKLGFTEPTPIQTDSIPHTMAGRDVLGQAQTGTGKTGAFGIPL
IEKVRGQEGIKSLILAPTRELAVQVAEQLKAFSRGQGIQVATVFGGMPIDRQIRELKKKP
QIVVGTPGRVIDHLNRRTLKTEDINTLILDEADEMMNMGFIDDMRFIMDKLPKEQRQTML
FSATMPRAIQELVQKFMKDPIIVKTMTNVDSNPDIDEHYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYRAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA
ARGLDISGVSHVYNFDIPQDVESYTHRIGRTGRAGKHGMAISFVNPVEMDYIRQIEKSKN
RTMTALRPPTPGEVMKARELDVKTKVKGWVEKNTEARIESIAQELINEHGDVKLVASLLQ
ELIKSNNDVDVQLTFEKPLGRKGGSGKSYGRGRGGNSGRSGGSRSRSKDGGKDNRRKSFD
RAGKAGASKGGKKPFKARTFADHKK
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaaatttagagacctaggtatcagcgaacctaccataaatgcgctggagaaattg
ggatttacagaacctacaccgattcaaacggatagtatccctcatacgatggcaggccgt
gacgtattaggccaagcgcaaactggtactggtaaaactggtgcttttggaattccttta
attgaaaaagttagaggtcaagaggggatcaaaagtttaattcttgcgcctacacgtgaa
ttagcagtccaggttgctgaacaattaaaagcatttagtcgtggacaagggattcaagta
gcgacagttttcggtggaatgccgattgaccgtcaaatcagagaattaaaaaagaaaccc
caaatcgtagttgggacacctggtcgtgtaatcgatcatttaaaccgtcgtacgttaaaa
actgaagacatcaatacgttaatcttagatgaagcagatgaaatgatgaacatgggattc
atcgatgatatgcgttttatcatggataaattaccgaaagaacagcgtcaaacaatgtta
ttctcagcaacaatgccgagagccattcaagagttagttcaaaagttcatgaaagatcct
atcattgttaagacgatgacaaacgttgattcaaatcctgatatcgacgagcattacaca
atcgttaaagaattagagaagtttgatactttcactaatttcttagatgttcatcaacct
gaactagcaatcgtattcggacgtacaaaacgtcgtgtagatgaattaacgagtgcgtta
atttctaaaggataccgtgcagaaggtttacatggtgacatcactcaagccaaacgttta
gaagttcttaagaaattcaaaaacgaccaaattgacatccttgttgcaacagatgttgct
gcacgtggattagatatttctggcgtatcacatgtttataactttgatattcctcaagat
gttgaaagttatacacaccgtatcggacgtactggtcgtgccggtaaacatggtatggca
atttcattcgttaacccggttgagatggattatatccgtcaaatcgaaaagtctaaaaat
cgtacgatgactgcattacgtccaccaacaccaggtgaagtaatgaaagcccgtgaatta
gatgttaagacgaaagttaaaggatgggttgaaaaaaatactgaagcacgtatcgagtca
atcgctcaggaattaattaatgaacatggtgatgtgaaattagtagcatcattattacaa
gaattaattaaatctaataacgatgtagatgtacaattaacatttgaaaaaccacttggc
cgtaaaggcggaagcggtaaatcttatggtcgtggccgtggtggaaatagcggacgttca
ggtggatctcgcagccgttctaaagatggcggtaaagataaccgtcgtaaatcgttcgac
cgtgctggtaaagcaggtgcttcaaaaggcggaaaaaaaccttttaaagcaagaacattt
gcagaccataaaaaataa
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