Mya arenaria (softshell): 128231876
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Entry
128231876 CDS
T09995
Name
(RefSeq) tetratricopeptide repeat protein 37-like
KO
K12600
superkiller protein 3
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128231876
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128231876
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
128231876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_17
TPR_19
TPR_11
TPR_14
TPR_CcmH_CycH
TPR_1
TPR_12
ANAPC3
TPR_9
TPR_7
TPR_15
RPN7
NatA_aux_su
ARM_TT21_5th
SNAP
TPR_3
FAT
Motif
Other DBs
NCBI-GeneID:
128231876
NCBI-ProteinID:
XP_052801085
LinkDB
All DBs
Position
4:2241294..2296022
Genome browser
AA seq
1308 aa
AA seq
DB search
MDAKEVKSALKKAREAIRQKEYNEALGVCKDIIASDGSNYMAFVLTAVAAEGLSQNDQAL
GAYRRAVQIDDTQILAWQGLGTFYEKNSIPAYASDQCDVYLKLIEFNKGQEDKIYELTVK
LVKLTEYVNDPAKIQKILELSGEYLASHPMYSDEVETILTFFFSQTLQRDGDSISKLAQT
YLQVYPASSVVLKHSILGCLDKMIVDETVATKLPDLVLRYEAVLGGCNCDVMTVAKAAIS
FTRKDCTSARKILQQLSSSGGQLVCVVCLQAKMEFELHQYISAIRTCKTAMDLVNRKDAI
LTQLCGSVRQVINVLTVRSLTQIGDTASLNRALGIIEKDLEHSESTQLMKGQICFKLGDL
QTARSCLIGNSTEKQDLEGQIFFAEKDFKAAKQMFESLLKQETDNSSHLVNLAKCLWETG
EDNQQYFTLLLKAAKLDPNNSVTFLYLGHYYIQVGKDKLRARKCYQKAFDLDPSCSEAGE
PLCDFLTEQGEEDLVHQILVKFTSMAPPGSGKWAWLRLGLWQMKHGDPSVAIASLQSALR
ADSKDTHVWECLGEAYLLRGSYTASLKAFTRAAELNPASIYCLFQIASIKQTLGQYQEAL
EEYKMILDQSDDYVPALKGLGETLVQIGRSLLNQCFYGRARDTAELAVKHLYRAGRLRPD
VSCLWKLIGDACTIIHVLPEKGFRFERPEKGNMTKLETLEFGNICYIRALKILPDCSSLW
HDLGVNYIHQSDSSSGDTAISLAEKSVQSLKKAIQLEPTNHKHWNALGFVACRKVYNKSS
LAQHCFIKSIKVEANNVVAWTNLAALYLKKENVKLAHEAFKVAQSLEPSYVACWVGQAII
AEVVGHEDAMDLFRHTTELSHHVEGAIGYGQWVCSVLLQSDKKGTSMYMYAIEEMGAVPS
ASDALARYTECNQTNPVAYNLHALLLERQGLYKTAITQLNRALLLCKSGQENAEILRDVL
ANCARCYRKNGDYPMACQLYKKLGEQSRVEDLYQFGLALYQGGDCKGAIQVYSQAAELET
TDKEKSHILVTMAMVYYKMNDLNQTKTILFQSSQSSEASPAGLKALCALGLLQSDITLAT
AAVQELSKLGGENSHLYDFTLLQCILNLAQDETDTALALVQASLEDSTTQGDCWYLLTLL
LLMFYPSKSGIATQAARNVLLHGHTVHNKKEQLLVPVADIKHGYHGNKTSCRNAFLSAQR
AVHLYPDKKEGWLTLTSAVGVEAASAMDDERRRSLMTFRYNMLVNVVQLDLDPVFSLWCL
QQRVACAALAGLHKEVMDDLDKLMTDYGEEKEATDFFNLMRKYLAENP
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaaaggaggtgaaatcagctttaaagaaggcaagggaggcaattcgacagaaa
gaatacaatgaggctctgggagtttgcaaggacatcattgcctctgatggatctaactac
atggcctttgtgttgactgctgtagccgcggaggggctttctcaaaacgaccaggctctt
ggcgcatacagaagagcagtgcagatagatgatacacagattctagcctggcagggcttg
ggcacattttatgaaaagaactccatcccagcctatgcctcagaccaatgtgatgtctac
ttaaagctcattgagttcaataaaggacaagaggacaagatatatgagctgacagtgaag
cttgttaaactgacggaatacgtgaatgatcccgccaagatacaaaagatcctagaacta
tctggagagtatctcgctagccatcctatgtacagtgatgaagtcgagaccattctaaca
ttcttcttctcacagactctccagagggatggtgatagcatctccaaactggcccagact
tatcttcaagtttacccagcatcctcggttgtactcaaacattccattctaggttgcctt
gacaaaatgatagttgatgagacagtagccactaaactcccagacctggtattgaggtat
gaagctgtgctgggtggctgtaactgtgatgtgatgacagttgcaaaggcggccatatct
tttacgaggaaggattgtacttcagcgcggaaaattctccaacaattgtcaagttctggt
ggtcagctggtttgtgttgtgtgtcttcaagccaaaatggaatttgaacttcaccagtat
atttctgctatcagaacttgcaaaacagccatggaccttgtcaacagaaaggacgcaatt
ctcactcagctgtgtggtagcgtacgtcaggtcatcaatgttctaactgtgcgatctcta
acacaaataggcgacactgcctcacttaacagggctttgggcatcatagaaaaggatcta
gagcacagtgagtccacacaactcatgaaagggcagatatgcttcaaactgggggatcta
caaactgcaaggtcatgtttaattggaaactccacagaaaagcaagaccttgagggtcag
atattctttgcagaaaaggacttcaaggcagcaaaacagatgtttgagagtttgttgaaa
caggagacagataactcctcgcaccttgtgaaccttgccaagtgtctatgggagacaggg
gaagataaccagcagtatttcacccttctgctgaaggctgcaaaactggaccccaacaac
agcgtgacctttctgtatctaggtcattactacattcaagttgggaaggacaaattaagg
gctcgcaagtgttaccagaaggcatttgaccttgaccccagctgtagtgaagcaggggaa
ccactgtgtgactttcttactgaacagggagaagaggatctggtccaccagattcttgtc
aagttcacgagcatggctccacctggaagcggcaagtgggcgtggctaagactgggtctg
tggcagatgaagcatggcgacccgtctgttgccatagcgtcactgcagtctgccctcagg
gctgattctaaagacactcatgtatgggaatgtctaggggaggcttacctgttacgtggc
agctacacagcgtctctgaaggcctttactcgggcagccgaactcaacccagcctccata
tactgtctcttccagatagcctcaatcaagcagaccctgggacagtaccaagaggccctg
gaggagtacaagatgatcctggaccagtctgatgactatgtacctgcactgaaagggctg
ggtgagacattggtgcagatagggcgttccttactcaaccagtgtttctatggtcgtgcc
agggacactgcagaactggccgttaaacatctgtacagggctggcagactgaggcctgat
gtgtcctgtctgtggaagctgattggggacgcttgtacaatcatacatgtcctgccagaa
aagggcttcaggtttgaaagaccagaaaagggcaatatgaccaagttggagactctagag
tttggaaatatttgctacattcgggctttgaaaattctcccagactgttcttcactctgg
catgatctgggtgtgaattacatccaccaatcagatagtagctctggtgatactgcaatt
tcattggctgaaaagtctgtccaatcgctgaagaaagccattcaactggaaccgaccaat
cacaagcattggaatgctctaggatttgtggcctgtaggaaagtgtacaacaagtcttcc
ctggcgcaacactgcttcatcaaatctatcaaggttgaggctaataatgtcgttgcatgg
accaatctggcagctttgtatcttaagaaggaaaatgtcaagctagcccatgaggctttt
aaagtggcccagagcctggaaccatcgtatgttgcctgctgggtggggcaggctattata
gcagaggttgttggacacgaggatgctatggatctctttagacacaccacagaactatcc
caccatgttgagggagctataggctatggccagtgggtgtgttctgttctgctacagtcg
gataaaaaggggactagtatgtacatgtatgccattgaagaaatgggagctgtaccttcg
gcttccgatgctctggctagatacactgagtgtaatcagacaaacccagtggcctacaac
cttcatgctctactgttggagagacagggcctgtataaaactgccatcacacagcttaat
agagcgctgttgctgtgcaagtccggccaggagaatgctgagatactaagggacgtgctt
gccaactgtgctcgctgttataggaagaatggtgactatcctatggcctgtcagctatac
aaaaagctaggagaacagtcaagggtagaggacctgtaccagtttggcctagccctgtac
cagggtggggactgcaaaggagccattcaggtgtacagccaggcagctgagctagaaaca
actgacaaagagaagtcacatattctggtaaccatggcaatggtgtactacaagatgaat
gaccttaatcagactaaaacaatactttttcaaagttctcagagttctgaagcatctcct
gctggtctgaaggccctctgtgcccttggtctgctccagtccgacatcaccttggcaact
gctgctgtacaggagctctccaaactgggaggggagaatagtcacctgtatgacttcact
ctgctgcaatgcatcttgaatcttgctcaggacgagacagacacagcattggctctggtc
caagctagcctggaagacagcaccacacaaggtgactgctggtatcttctgacacttcta
ctgctcatgttttaccccagtaaatcaggcattgcaacccaggctgctagaaacgttcta
cttcatggacacacggtgcataataagaaagagcagttgctagtgccagttgctgacatc
aaacatggttaccatggcaataagaccagctgtagaaacgccttcctcagtgcacagagg
gctgtacatctttaccctgacaagaaggaaggctggttgactcttacctcggccgtcggt
gttgaagcggccagtgcaatggatgatgagaggcgaagatccctgatgacattccggtac
aacatgctggtcaacgtggttcaactagacctagatcctgtgtttagtctctggtgttta
caacagagggtggcatgtgctgccttggcgggtctacacaaggaagtcatggacgacctg
gataagttgatgaccgactatggagaggaaaaggaagcgacagacttcttcaaccttatg
aggaaatatctagcagaaaacccatga
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