Mya arenaria (softshell): 128243074
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Entry
128243074 CDS
T09995
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
maea
Mya arenaria (softshell)
Pathway
maea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
maea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128243074
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
maea03019
]
128243074
Messenger RNA biogenesis [BR:
maea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
128243074
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
128243074
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
NOT1_connector
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
128243074
NCBI-ProteinID:
XP_052816539
LinkDB
All DBs
Position
8:17720073..17761243
Genome browser
AA seq
2466 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFRSSVAEINHLVSQHGAEADRHLFRCLFSHVDFSSD
GKSAGKDFHQTQFLIQECTSLLSKPNFVSTLCFAIDSPLHHQKTLKPSPHLFPQISKLLR
LTRVQEVVFGLAFLQSSNQEIQNHAIQFVKQKLPDLIRSYVDAGDHSSLRQEGGLQDVAI
EVLHLLLAHLIQSREQFGIGIDQKEAFLATLRKDFPRDRVPVVIGPLLYPETEDISVEKL
MFITSMPKTHLDASLADMILESGFSCTSSVEECRNMVVQFGQKEVTPAVVARVLGMMARN
PSSLPDQPQQVSVAPGSGWGDIGKDKIEQPGVNTWNVENFIQTIQDLFTSHMNWREVVSE
MDFPQFLVANKRGLRLLMKGLIQGLQEIFPVEYIYRPWKNTEGQLSLIIQSLRNPDVFCF
ADYPCHSVVIDILKTAPDDEKRDIATWKSLDLVELLLRLSEQGHYQQVSELFKFPIQNCP
DMLVLALLQISPSWNTLKQELISMLMPMFLGNHPNSAVVLHYAWHCQGLSSTIRTLIMHS
MAEWYMRGEPHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWL
SDKIREHREPFIQTCVTFLKRRCPQLVGNMPKDDLTSRSQQLPPETIKVMLSCLQGCASN
VSPELNEVIVMMINHASVLLRQTAVGPKPPNPMASGPPVGPSPSMPPVGVSLGGGANTGL
GLGPNMAQNAMASMAAGPSSQLDQADTLGIPKSWGVPGQGSTGFASLGVGGSTNQTPGSP
AKGFPSQANSGFGAMQNLTSQLQNLTMPSSSGLSGLMAPRAPGAPGVNTLGSLSAQQVMK
QQGPQPTPTPPQQPIQPQVPTDVSSLFPDMNQQFTKEVEDEANSYFQRIYNQPPHPTMSI
DEVLDMLKRFKDSAVRKEKDVYECMLRNLFEEYQFFPKYPDRELHTTAVLFGGIIEKGLA
TYMALGIALRYVLEALKKQHGSKMYYFGIAALDRFKTRLKDYPSYCQHLAAIPHFSQFPQ
PLIEFVEYGAQNQEPPQLAAAAATSRSLTPVTASLNLLGGQSMFGMGGNLGAPSSVSNAM
SAGLESTFNMMSMGTMTSIPTTTVTVTTATASTPATTTTAKTGNMPKPSIASATNIDTLL
AGQDKEEVVVPSEAIQDRVFFIFNNLSMSNMTQKSEELKKEVKEEHRQWMAQYLVMKRAS
IEPNFHTLYANFVDALNIKDVAEMVILEAFRNIKVLLKSDKGDANFSDRTLLKNLGHWLG
MLTLAKNKPILQIDIDLKNLIYEAYHKGARELLYVVPFTAKVLESCGKSKVFRPPNPWIM
GIMNVLAELHQEPDLKLNLKFEIEVLCKTLMLDLGDLKPGNYLKDTSRLANLEIQLSINK
PLVSQVSAPPPQTISTPQPPEPPVVPTLTNVTPTVTTTSITASTTPSSTPSLPPQPQFAF
DDIIVTSLAGLATHIVINEQLGVFQANPQLKQYVRVSIERAVQDLLPPVVERSLKIALTT
CEQIIRKDFALDPDENRMRVAAHHMVRSMTSGLTLYTCREPLFLAISTNLKTAFMNTLRQ
GASQQQKELIEQAAMLVAQDNIELASAFIQKTAVERAIPEMDKRLAADLDSRKAAREKGI
RFCEPITLTYQAERMPEQIRLKVGGETPQQIAVYEEYARNIPGFLPLSELNLPAGLAKPM
PSYPASEELMLIYEKIAREIEQSISQAGVAGTNPLLAQMRALLDTIMMAGASRDLASAMA
LLQKATEGLMEQFTARTQDQKLMLRFRDCHLLVLNALQDQRAFGPQWTSKHVTRCVSEGC
REEHRFNLEAVDILIQSQLVNLNSYDMYLFQLMESDRNGVAITFAMQLVQRYCVDDKRSG
QITEADFANTIEFLSYFAGKSRQLPAGLTNLLENLRQTPTTGGGGEFGMLDRAPGGGGPT
FMMQSGITQAREIEDPPGLHEKTEYLLREWVNMYHSPAAGRDSTKAFSAFVQQMHQQGIL
KTDDLITRFFRLCTEMCVDLCYRALSEQTHNSGLVRAKCFHTLDAFVRLITLLVKHSGDT
ANSVTKINLLNKVLGIVAGVLLQDHEVRKTEFQQLPYHRIFIMLFIELNAPDIILENINF
QVLTAFCNTFHVLRPTKAPGFCFAWLELISHRVFVGRMLALTPQQRAWGMYAQLLIDLFK
FLHPFLRNAELTKPIHFLYKGTLRVLLVLLHDFPEFLCDYHYAFCDIISTNCIQMRNLIL
SAFPRNMRLPDPFTPNLKVDMLADIAHAPRIPTNFANMITPVSFKNDLDSYLKTRSPVTF
LSDLRSSLQSNEPGSRYNISLMNALVLYVGTQAIQHIHTKSLTPSMSTIAHSSHMDIFQN
LAVDLDTEGRYLFLTALANQLRYPNSHTHYFSCTLLYLFAEANTEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPQFKFWTHEFVHCAPEIEKLFESVARSCIQKGSGATPSREQ
EAAELH
NT seq
7401 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggattcgttatcctttgctttagctgaaatcagttattcggttgcaaatctt
acaaagaagaactttaggtcgagtgttgctgaaataaaccacttggtcagccagcacggt
gctgaagcagacaggcatctattccgatgtttgttttcccatgtagatttcagcagtgat
ggtaaaagtgctggcaaggactttcatcagactcagtttttaattcaagagtgtacttca
ctgcttagcaagccaaactttgtgtcaacattgtgttttgctattgatagtccactccac
catcaaaagactttgaagccatcaccgcacctgtttccgcagattagtaagctcctgcga
ctcactcgtgtacaagaggttgtatttggactagcattcctccaatcctcaaaccaggaa
atccagaatcacgccattcagtttgtgaaacagaaactaccagatcttatccgctcatac
gtagatgcaggtgaccactcttcgctgaggcaggagggaggcctgcaggacgtggctata
gaggttctccacctgctgcttgcccacctcatacaatctagggagcagtttggcatcggc
attgaccagaaagaggcattcctcgctacactacggaaagactttccgcgtgaccgtgtg
cccgtagtgattggaccactgctgtacccagaaaccgaggacatctctgttgagaaactt
atgttcatcaccagcatgccgaaaacacatcttgatgcatccctggctgacatgatcctg
gagtcgggcttctcctgtacttcatcggtggaagaatgccgtaacatggttgtacagttt
ggccagaaggaggttaccccagctgtggtagctcgcgtcttagggatgatggcgagaaat
ccctcctccctgccggaccagccacagcaggtgagtgtggcccctggaagtggctgggga
gacatcgggaaagacaagatcgaacagccgggagtcaacacttggaatgtggaaaacttt
atacagactatacaggacctgtttacatcccatatgaactggcgtgaggttgtgagtgag
atggacttcccacagttcctggtggccaacaaacggggcctccgacttctcatgaagggc
cttatacagggcctacaggaaatattccctgtcgagtacatctaccgtccgtggaagaat
actgagggacagttatcattgatcatccagtccttgagaaacccagatgtgttctgtttt
gctgactatccctgccattccgtggtcattgacatactcaagactgctcccgatgatgaa
aaacgtgacattgccacttggaagtccctagaccttgtggagctgctgttgcgactgtca
gagcagggtcactaccagcaggtgtctgagctgttcaagttccccatacagaactgcccg
gacatgctcgtactagcactgctacagatatcgccatcatggaacacactgaagcaagag
ctgatctccatgttgatgccgatgttcctgggaaaccacccaaactctgccgtggtgctc
cactatgcctggcattgtcagggcctctcttccaccatcaggacgctgatcatgcactca
atggcggagtggtacatgcgcggtgagccacatgaccagaccaggctttccaggatattg
gacgttgcacaggatctcaaggccttgtccatgttgctgaacgccacaccatttgcattt
gtgattgacctagcgtgtcttgcctcccgtcgtgagtaccttaaactggacaagtggctg
tcagacaagatacgagaacatagggagccgtttatccaaacatgtgtgacgttcctaaag
cgaagatgcccccagctagtgggtaacatgcctaaggatgacctgacttctcgtagtcag
caactgccaccagaaaccatcaaagtgatgctctcctgtctacagggatgtgctagcaat
gttagcccagagttaaatgaagtgattgtgatgatgatcaaccacgccagtgtcctactg
aggcagacagcagtgggtcctaaaccccctaaccccatggcctctggcccccctgtggga
ccgagccccagtatgccacctgtgggggttagcctagggggtggggcaaacacagggctt
ggacttgggccaaacatggcacaaaatgcaatggcctccatggctgctgggccttcatca
cagcttgaccaggctgacacactgggtatccccaagtcgtggggggtcccgggccagggc
agtacgggctttgcaagtcttggcgtcgggggctccaccaaccaaaccccaggctctcca
gccaaaggcttcccctcccaggcaaactctggctttggagcgatgcagaatcttacttca
cagctgcagaacctgacaatgccctccagttcaggcctgtccgggctcatggccccacgg
gcaccaggtgctcctggcgttaatactctgggctcccttagcgcccagcaggtgatgaaa
caacaggggcctcagccaactcccactcccccacagcagcccatacagccacaagttccg
acagatgtatcgtccctgtttccggacatgaaccagcagtttacaaaggaggtagaggac
gaggcaaactcttacttccagcggatctacaaccagcccccgcaccccaccatgtccatt
gacgaggtcttggacatgctcaaacgattcaaagactccgctgtcaggaaggaaaaagat
gtgtatgagtgcatgctgcggaacctgtttgaggagtaccagttcttccccaaataccca
gatagggagcttcacaccactgctgttctgtttgggggaataatcgagaaaggactcgcc
acatacatggcattgggtattgctttgcggtatgtgttggaggctctgaagaaacaacat
ggcagtaagatgtactactttggtatagcagccctagataggttcaagactcgcctgaag
gattacccatcatattgtcagcacctggctgccattccacactttagtcaatttcctcag
ccgctcatagagtttgtcgagtatggagcccaaaaccaagagccgcctcagcttgcagca
gccgcagcaacctctcgtagcttgacccccgtcacggcctccctcaaccttctgggaggt
cagtctatgtttggtatgggtggtaacctcggggcaccaagctcagtctcaaacgccatg
agcgccgggcttgagtcaacgttcaatatgatgagcatgggcaccatgacatccattccg
acaaccacggtgacagtaaccacggcaacagcttccaccccagcaacaacaacaacagct
aagacaggaaatatgcctaagccatcgattgccagtgccaccaacattgacacccttctg
gccggtcaggacaaggaggaggtggtcgtgccctcggaagccatccaagaccgagtgttc
ttcattttcaacaacctctcaatgtcaaacatgacgcaaaagagtgaggagctgaagaaa
gaagtgaaggaggaacatcgacagtggatggcccagtatctcgtgatgaagagggcctct
attgagccaaacttccatacgctatatgcaaactttgtggatgctctcaacatcaaggat
gttgcagaaatggtcatactggaggcatttaggaatatcaaggttttgttaaagagtgac
aaaggtgacgctaacttctcggacagaacactactcaagaacctcggacactggcttggc
atgctgacactcgccaagaataaacccatccttcagattgacattgacctgaagaatctg
atttatgaggcctaccataagggtgccagggagctgttgtacgttgtacccttcactgcc
aaggtcctcgagtcatgtggcaagagcaaggtattccggcccccgaacccctggatcatg
ggcatcatgaatgtgctggctgagctgcaccaggaaccagacctgaaactcaacctcaag
tttgagattgaagtcctctgtaaaaccctcatgctggatttgggggacctgaaaccaggc
aactacctgaaggacacgtctcgcctggccaacctggagatccagctgtccatcaacaag
cccctggtgtcccaggtgtctgccccacctcctcagaccatctccacccctcagcccccg
gaacctcctgtcgtccccaccctcacaaatgtgaccccaacagtgacgaccacctccatt
actgcatcgaccacccccagttccaccccaagtctcccaccccagccccagtttgctttt
gatgacatcattgttacatcactggctggacttgcaacccatattgtcatcaatgaacag
ctgggagtgttccaggctaacccgcagctgaagcagtatgtacgcgtgtccattgagaga
gccgtacaggacctcctgcctcccgtagtggaaaggtcactaaagatcgcccttactaca
tgtgaacagatcatcagaaaggactttgctctggacccagatgagaatcgtatgcgtgtt
gcagcccaccacatggtgcgcagtatgacatccggtcttacactgtacacgtgcagggaa
ccacttttcctggctatctcaaccaacctcaaaacagccttcatgaacacactccggcaa
ggagcaagccagcagcagaaggagttgatcgagcaggcggccatgttggttgcccaggac
aacatagaactggcctcggccttcatacagaagactgcagtggagcgcgccattcccgag
atggacaaacgacttgcagcagaccttgacagtcggaaggctgcaagggaaaagggtatc
cgtttctgtgagccaatcacgctgacataccaggccgagcgtatgccggagcagatacgc
cttaaggttggtggagagacgccccagcagattgctgtttacgaggagtatgccaggaac
atcccaggatttctgccactatccgagctgaacctgccagcaggccttgccaaacctatg
ccttcttacccggcctcagaggagctgatgcttatctatgagaagatcgctcgagagatt
gagcagagtatctcgcaggcaggcgtggcgggcaccaacccactgctggcgcagatgaga
gcgcttcttgacacaatcatgatggcaggggccagtagggacctagcatctgcaatggct
ctgcttcagaaggctactgaggggttgatggagcagttcaccgcccggacccaggatcag
aaattaatgttgaggttccgagactgtcacctccttgtgttgaatgctttgcaagatcag
agagcatttgggcctcagtggaccagcaaacatgttaccaggtgtgtgtcagagggatgc
cgggaggaacatcgttttaacctggaggcagtagacatcctcattcagagtcagcttgtg
aaccttaactcgtacgacatgtacctcttccagctaatggagagcgacaggaatggtgtc
gctatcacattcgccatgcagcttgtccaaagatactgtgtggatgataaacgcagtgga
cagataactgaggctgactttgcaaacaccattgagttcctgagctactttgctggcaag
tccaggcaactcccggctggactgacgaacctgttggagaacctgcgccagaccccaact
accggtgggggaggggagtttggaatgctagaccgagccccgggcgggggcggacccacc
ttcatgatgcagtcgggtataacccaggcacgggagatcgaggatccgcccggcctccac
gagaaaactgagtacttgctgcgggagtgggtcaacatgtaccactcgcctgcagcaggg
agagacagcacgaaggcgttctccgcatttgtacaacagatgcaccaacaaggaatactg
aaaacagacgacttgataacccgattttttcggttgtgcacggagatgtgcgttgatctg
tgctacagggctctgtcagagcagacgcacaactccggtctggtacgcgccaagtgtttc
cacaccctggacgcgttcgtacgactgatcaccctgctggtgaaacactccggcgacact
gccaactcagtgaccaagatcaacttgctgaataaggtgttgggtatagtagcaggcgtg
ctgctgcaggaccatgaggtacgcaagacagagttccaacaactgccctaccatcgcatc
ttcatcatgctcttcattgagctcaatgcccccgacattatcctagagaacatcaatttc
caggttctcactgccttctgcaacacgttccatgtactgagacccacgaaggccccgggc
ttctgttttgcctggttggagctgatctctcatcgagtgtttgtagggcgcatgctggcg
ctcaccccacaacagagggcatggggcatgtacgctcagctactgatcgacctgttcaag
ttcctccacccgttcctgaggaatgctgagcttaccaagccaatacacttcctctataag
ggtacgttgcgagtgttgctggttctgctccatgactttcccgaattcctctgtgattac
cactacgcgttctgtgacatcatctccactaactgtatccagatgcgcaacctgattttg
agcgcgtttccccgcaacatgcgcctccccgaccccttcactccgaatctaaaggtggat
atgttggctgatattgcccacgctccaaggataccgacaaactttgcaaacatgatcact
cccgtctcattcaaaaatgacctggactcatacctgaagacacgctccccagtgacgttc
ctctcggaccttcgcagcagcttacagtccaacgagccgggctcacgctataatatctcg
ttgatgaatgccctggtattgtacgtgggtacacaggccatacagcacatacacacgaag
agcctcacaccaagcatgtcgacaatcgcccactcgtctcatatggacatattccagaat
cttgctgttgacctggacactgaaggtcgatacttattcctgacagctttagcgaaccag
ctgcgctaccccaacagccacacccactacttcagctgcacactgctgtacttgtttgcc
gaggccaacacggaagccatacaggaacaaatcaccagggtactgttggagcgtctgatt
gtcaaccgcccccacccctggggcctgctcatcaccttcatagagcttattaagaacccc
cagttcaagttctggactcatgagtttgtccactgtgctcccgagattgagaagttgttt
gagtcagttgctcgatcctgcattcaaaaagggtcaggggcgaccccatcacgtgaacaa
gaggctgccgagttacattag
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integrated database retrieval system
