Methylotuvimicrobium alcaliphilum: MEALZ_3360
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Entry
MEALZ_3360 CDS
T01649
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta (RNAP subunit beta) (Transcriptase subunit beta) (RNA polymerase subunit beta)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mah
Methylotuvimicrobium alcaliphilum
Pathway
mah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MEALZ_3360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mah03021
]
MEALZ_3360 (rpoB)
03400 DNA repair and recombination proteins [BR:
mah03400
]
MEALZ_3360 (rpoB)
Enzymes [BR:
mah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MEALZ_3360 (rpoB)
Transcription machinery [BR:
mah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MEALZ_3360 (rpoB)
DNA repair and recombination proteins [BR:
mah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MEALZ_3360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CCE25023
UniProt:
G4STM5
LinkDB
All DBs
Position
complement(3872530..3876606)
Genome browser
AA seq
1358 aa
AA seq
DB search
MAYSFTEKKRIRNNFGKGTEVLDVPYLLATQINSYASFLQSGMSPEKRLNVGLHAAFSSV
FPIESHSGYAVLEYVKYRLGEPTFDVRECQQRGATFAAPLRVLVRLVIYDKDAPGSTKVV
KDIREQEVYMGELPLMTDNGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLFNA
RVIPYRGSWLDFEFDHKDCVYVRIDRRRKIPATILLRALGYNNEEMMDIFFETNRFVLTG
DSCLFDLVPERLRGEIAAFDFKHDGKVLIEEGRRITAKHIRQLKEAGVTQIEVPKGYLHG
KILSHNLIDESTGELLANVNDELTEELLDKIIDSGIQELNTIYVNDLDRGPYISNAMRLD
TSSTQLEALVEIYRMMRPGEPPTKESAENLFQNLFFTEDRYDLSTVGRMKFNRRLGRQET
TGEGTLSKEDIIDVLKELINIRNGNGNVDDIDHLGNRRVRSVGEMIENQFRVGLVRVERA
VKERLTLADSEGLMPQEIINAKPVSAAVKEFFGSSQLSQFMDQNNPLSQVTHKRRVSALG
PGGLARERAGFEVRDVHTTHYGRVCPIETPEGPNIGLINSLAVYARTNEYGFLETPYRKV
VDGKLTDQVEYLSAIEEGEFVIAQAAVPVDADGRLKEGLVSCRYKDEFTLSMSDTVQYMD
VSSKQIVSVAASIIPFLEHDDANRALMGSNMQRQAVPTLRAEKPLVGTGMERTVAKDSGV
AVVATRGGTIEAVDAARVVVRVNDAETESGEPGVDIYNLTKYTRSNQNTCINQKPLVKLG
DIVNAGDILADGPSTDIGELALGQNMLVAFMPWNGYNFEDSILVSERVVKEDRFTTIHIE
EKTCVARDTKYNPEEITADIPNVSEEALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQ
LTPEEKLLRAIFGEKAADVKDTSLRVPNGVEGTVIDVQVFTRDGVKKDKRALEIEEEQIK
RYRKDLDDQLKIVEKDIYARVARLIVGKKALSGPDNLSSGAVVNQEYLDRLRPSQWLQIK
MEDENINVQLEGVIEQIEQQRKDFDVKFDIKRKKITMGDDLPPGVLKMVKVYLAVKRRIQ
SGDKMAGRHGNKGVISMIRPIEDMPYTADGNPVDIVLNPLGVPSRMNVGQVLETHLGWAS
KGLGIKIGKMLEAQAKIVEIRGFLEKIYNSSGRKEDLNALTDKEILELAHNLVEGVPMAT
PVFDGASEDEIKTMLRLADYPEHGQTVLYDGLTGEPFEREVTVGYMYMLKLNHLVDDKMH
ARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKM
YKNIVDGDHKMEAGMPESFNVLIKEIRSLGVNIELESD
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atggcctactcttttaccgaaaaaaaacgcattcgtaacaactttggcaaaggtacggaa
gtactcgatgtgccttatcttttagcgacgcaaatcaattcctacgcaagttttctacaa
tccggtatgtccccggaaaaacgattgaatgtaggtttgcatgctgctttttccagtgtt
tttccaatagaaagtcattccgggtatgcggttctggaatatgtaaaataccggttagga
gagccgacattcgacgtcagggagtgtcaacaaaggggggcaacttttgcggcgccgctg
agagtgttggtgcgcttggtcatttacgataaagacgcgcctggaagcacgaaagtcgtt
aaggatatccgggagcaggaagtctacatgggcgagttgccgttaatgaccgataacgga
actttcgtcattaatggaaccgagcgggtaatcgtttctcagttacatcgatctccaggc
gtgttttttgatcacgataaaggtaaaacgcattcatcaggaaagttattattcaacgca
agagttatcccttatcgcggttcttggcttgatttcgaattcgatcacaaagattgtgtc
tatgtcagaatagatagacgtagaaaaattccggcaacgatcttgttaagagcgctgggt
tataataacgaagaaatgatggatattttcttcgaaaccaatcgctttgtcttaacgggt
gatagttgtttgttcgatttggtgccggagcgtctgagaggcgaaattgcagctttcgac
tttaagcatgacggaaaggttcttatcgaagaagggcgtcggataacggcaaaacatata
cgccaattaaaagaagcgggcgtcactcaaatcgaagtccctaaaggttatttacacgga
aaaatattaagccataatctgatcgatgaatcgacaggtgagctgcttgccaatgtcaat
gatgagcttaccgaggagttgctcgataaaatcatagatagcggtatacaagaactaaac
acgatttatgtcaacgatctggatagggggccctatatctcgaacgcgatgcgtttggac
acgagtagcacgcaactggaagcgttagttgaaatttatcgtatgatgagaccgggagag
ccgccgacaaaagaatcagcggaaaacctgtttcaaaacctgttttttaccgaagaccgt
tacgatttgtcgaccgtcgggcgtatgaaattcaatcggcgcctgggtcgtcaagaaaca
accggagagggcacgctcagcaaggaagatatcattgatgtattaaaggagttgatcaat
atccgaaacggaaacggtaatgtcgatgatatcgatcatttgggtaaccgaagagtccgt
tcggttggcgagatgatcgagaaccaattccgagttggcttagtcagggtagagcgagcg
gttaaagaacggctgacattagccgattccgaaggcctgatgccgcaggaaattatcaac
gcgaaaccggtatctgcggcggttaaagagtttttcggctcaagccagctgtcgcagttc
atggatcaaaataatccgctttctcaggttacgcacaagcgccgggtatcggctttgggt
ccgggtggattggcgcgcgagcgtgccggtttcgaagtgcgcgatgttcataccacgcat
tacggacgcgtttgcccgatcgaaacgccggagggaccgaatatcggtttgatcaactca
ttggccgtttatgcgcgcaccaacgaatatggctttcttgaaacgccctatcgaaaagtt
gtcgatggaaaactaaccgatcaggttgaatatctctcggcgatcgaagaaggggagttt
gtcattgctcaggctgctgtgccggtcgatgcggacggtcgtctaaaagaaggactagta
tcatgccgttataaagacgaatttacattgtccatgtccgataccgtgcaatacatggac
gtatcgtctaaacaaatagtctctgttgcggcgtctatcatcccattcttggagcacgac
gacgcgaatcgagcgttaatggggtcgaatatgcagcggcaagcggttccgactctaaga
gccgagaaaccgctagtgggaacgggtatggaacgcacggtagcaaaggattccggggtg
gctgtcgtagctacgcgaggcggaaccattgaggccgttgatgccgctagggttgtggtc
agggtgaatgatgccgaaaccgagtcaggtgagccgggggtcgatatttataatctgacc
aagtatacgcggtccaaccaaaatacctgtattaaccaaaaaccattggtcaagcttggc
gacatcgtcaatgcgggagatatattagccgatgggccttcgaccgatattggcgaattg
gctttgggtcaaaatatgcttgttgctttcatgccttggaatggatacaacttcgaggat
tcgattttagtttccgaaagggttgttaaagaagatcgttttacgactatccatattgaa
gaaaaaacctgcgttgcgagggatactaaatataacccggaagagattaccgcggacatt
ccaaacgtcagcgaagaagccttatcgaaattggatgagtccgggatcgtttatgtcggt
gccgaggtcaaaggcggtgatattctggtcggtaaagtaactcctaaaggtgaaacgcaa
ttaacgcctgaggaaaagctattgcgtgcaattttcggtgagaaagctgccgacgtaaaa
gatacgtcattaagagtaccgaacggtgttgaagggacggttatcgatgtccaagtcttc
acgcgagatggtgttaagaaggataagcgtgcgctcgaaatagaagaagagcaaattaag
cgttatagaaaagatcttgacgatcagctaaaaattgtcgaaaaggacatatatgcgcga
gtcgctagattaatcgtcggcaagaaggctttatccgggccggataatttatcttcaggc
gctgtcgtaaatcaagaatatctggatagattgaggccttctcaatggctgcaaatcaaa
atggaagatgaaaacatcaatgtccaattggaaggagtcatcgagcaaatcgagcaacag
agaaaggatttcgatgtcaagtttgatatcaagcgcaaaaagatcaccatgggcgatgat
ttgccgcccggtgtcttaaaaatggttaaggtctacctcgcggttaagagaagaatacag
tcgggcgataaaatggctgggcgacatggaaataaaggggttatttccatgattagaccg
atcgaagacatgccttatacagccgatggtaatccggtcgatatcgtattgaatcctctc
ggggttccgtcacgtatgaatgtgggtcaggtgttggaaactcatttgggttgggcgtcc
aaaggtttgggtatcaagattggtaaaatgcttgaggctcaagcaaaaatcgttgaaatt
agagggtttttagaaaaaatctataatagcagcggtcgtaaggaagacttgaatgccttg
accgataaagagatcctcgagctagcccataatttggttgaaggggtaccgatggcgact
cctgtgttcgatggcgctagcgaagatgaaattaaaaccatgttgagactggcagattat
cctgaacatggtcaaaccgtactctatgacggtttgaccggcgaaccgttcgaacgcgaa
gttaccgttggttacatgtacatgttgaaattgaatcatttggtagatgataaaatgcat
gcacgttctaccggtccttatagcctggtaactcaacagccgctgggaggaaaggctcaa
ttcggcggacaacgattcggtgaaatggaagtctgggctttggaggcttatggggcggct
tataccttgcaggaaatgttgactgtgaaatccgatgatgtaaccggtagaaccaaaatg
tataaaaatatcgttgatggcgaccataaaatggaagccggtatgccggagtcgttcaac
gtcttgatcaaagaaatacgttcactcggtgtcaatattgagttagaaagcgattaa
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