Pseudoduganella albidiflava: EYF70_27035
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Entry
EYF70_27035 CDS
T05903
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mali
Pseudoduganella albidiflava
Pathway
mali03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mali00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EYF70_27035 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mali03021
]
EYF70_27035 (rpoB)
03400 DNA repair and recombination proteins [BR:
mali03400
]
EYF70_27035 (rpoB)
Enzymes [BR:
mali01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EYF70_27035 (rpoB)
Transcription machinery [BR:
mali03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EYF70_27035 (rpoB)
DNA repair and recombination proteins [BR:
mali03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EYF70_27035 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RnfC_N
UbiD
Motif
Other DBs
NCBI-ProteinID:
QBI04065
UniProt:
A0A411X5E8
LinkDB
All DBs
Position
complement(6530173..6534282)
Genome browser
AA seq
1369 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYENFLQEHTPVASRKNEGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQLRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVSILLKAIGMTPEQILANFFVFDNFNLRSE
GGELEFVAERLRGEVARFDIVNPKDGKTIVTKDKRINAKHVREIEAAGIQHISVPEDYLL
GRVLAKNIVDPETGEVVASANDELTEELLNRLRDANISAIQTLYTNDLDQGAYISQTLRI
DDTADQNAARVAIYRMMRPGEPPTEESVEALFNGLFYSADRYDLSAVGRMKFNRRIGRDE
LTGAMTLANEDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER
AVKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFLETPYRK
VENSKVTDKIDYLSAIEEGRYIIAQANARINEEGQLDDELVSAREAGETILVSPERIQYM
DVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKALVGTGIERTVAVDSG
TTVQALRGGVVDYIDAGRVVIRVNDEEAQAGEVGVDIYNLIKYTRSNQNTNINQRPIVQV
GDRVAKGDVIADGASTDLGELALGQNMTVAFMPWNGLNFEDSILISENVVKDDRYTSIHI
EELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIPRDKRAQQIIDDEL
KRYRLDLNDQMRIVEGDAFQRLEKMLIGKIVNGGPKKLAKGAAITKEYLADLDKYHWFDI
RPADDDAATALEAIKESINEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRL
QSGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADVVLNPLGVPSRMNVGQILETHLGWA
AKGLGIRIGEMLAQQIKVEEMRKYLTTVYNESGAKEDIASLSDDEIMKLAANLKKGVPFA
TPVFDGAHESEIRRMLDLAYPDEIATKLGMTPSKNQVTMYDGRTGEAFERKVTVGVMHML
KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV
KSDDVNGRTKVYENLVKGDHVIEAGMPESFNVLVKEIRSLGIDIDLERT
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaagcgcatccgcaaatcattcgcgaagcgcgccaac
gtccacaacgttccgttcctgctggcgacccagctcgagtcgtacgaaaacttcttgcaa
gagcacactccggtggcaagccgcaagaacgaaggcctgcaatcggcctttacttccatc
ttcccgatcgtttcgcacaacggctttgcacgcctggagttcctctcctacgtgctgggc
gaccccgccttcgacgtgaaagagtgccagctccgtggcctgaccttcgcttccccgctg
cgcgccaaggtgcgcctggtgatcctggacaaggaatcgccgaccaagccggtcgtcaag
gaaatgaaggaacaggaagtctacatgggcgaactgcccctgatgacgaccaccggttcg
ttcgtgatcaacggcaccgagcgtgtcatcgtgtcgcagctgcaccgttccccgggcgtg
ttcttcgaacacgaccgcggcaagacgcactcgtccggcaagctgctgttctcggcccgt
atcattccttaccgcggttcgtggctggacttcgagttcgacccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtgtcgatcctgctgaaggccatcggcatg
acgccggaacagatcctggcgaacttcttcgtgttcgacaacttcaacctgcgctcggaa
ggcggcgaactcgagttcgtggccgaacgcctgcgcggtgaagtcgcgcgcttcgacatc
gtcaatccgaaggatggcaagacgatcgtcacgaaggacaagcgcatcaacgccaagcac
gtgcgtgaaatcgaagcagccggcatccagcacatttccgtgccggaagactacctgctg
ggccgcgtgctggccaagaacatcgtcgatccggaaacgggcgaagtggtggcctcggcc
aacgacgagctgaccgaagagctgctgaaccgcctgcgcgacgccaacatcagcgccatc
cagacgctgtacaccaacgacctggaccagggtgcctacatctcgcagacgctgcgtatc
gatgacaccgccgaccagaacgccgcgcgcgtggcgatctaccgcatgatgcgtcctggc
gaaccgccgaccgaagaatcggtggaagcgctgttcaacggcctgttctacagcgccgac
cgctacgacctgtccgccgtcggccgcatgaagttcaaccgccgtatcggccgtgacgaa
ctgaccggcgcgatgacgctggccaacgaagacgtgctggccgtgatcaagatcctcgtc
gagctgcgcaatggccgcggcgaagtcgacgatatcgatcacctgggtaaccgtcgcgtg
cgctgcgtgggcgaactggccgaaaaccagttccgcgccggcctggtgcgcgtggaacgt
gccgtcaaggaacgcctcggccaggccgaagcggacaacctgatgccgcatgacctgatc
aacagcaagccgatctcggccgcgatccgcgaattcttcggttcgtcgcagctgtcccag
ttcatggaccagaccaacccgctgtccgagatcacccacaagcgccgtgtttccgcactg
ggcccgggcggcctgacgcgcgaacgcgccggcttcgaggtgcgcgacgtgcacccgacc
cactacggccgcgtgtgcccgatcgaaacgccggaaggcccgaacatcggcctgatcaac
tcgctggcactgtatgcccgcctgaacgaatacggcttcctggaaaccccgtaccgcaag
gtcgagaattccaaggtcaccgacaagatcgattacctgtccgccatcgaagaaggccgc
tacatcattgcgcaggcgaacgcccgcatcaatgaagaaggccagctggacgacgaactg
gtgtcggcccgtgaagccggcgaaaccatcctggtttcccctgagcgcatccagtacatg
gacgtggcaccgggccagatcgtttccgtggcagcttcgctgattccgttcctggaacac
gatgacgcgaaccgtgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctg
cgccctgaaaaggcgctggttggtaccggtatcgaacgcaccgttgcggtcgactccggc
accaccgtgcaggcgctgcgtggcggcgtggtggactatatcgatgcaggccgcgtggtg
atccgcgtcaacgacgaagaggcgcaagccggcgaagtcggtgtggacatctacaacctg
atcaagtacacccgttccaaccagaacaccaacatcaaccagcgtccgatcgtgcaagtg
ggcgaccgcgtggccaagggcgacgtgatcgccgacggcgcatcgaccgacctgggcgag
ctggcactgggccagaacatgaccgtggccttcatgccgtggaacggcctgaacttcgag
gattcgatcctgatctcggaaaacgtcgtgaaagacgaccgttacacctcgatccacatc
gaagaactgtccgtggtggcccgcgacacgaaactgggcgcggaagaaatcacccgcgac
atctcgaacctggcggaaaaccagctggcccgcctggacgaatcgggcatcgtgtacatc
ggcgccgaagtgcaggccggcgacacgctggtcggtaaagtgacgccgaagggcgaaacg
caactgacgccggaagaaaagctgctgcgcgcgatcttcggcgaaaaagcatccgacgtg
aaagacacgtcgctgcgcgtgccatcgggcatggtcggtaccgtgatcgacgtgcaggtg
ttcacccgcgaaggcatcccgcgcgacaagcgcgcccagcagatcatcgacgacgagctg
aagcgctaccgcctggacttgaacgaccagatgcgtatcgtggaaggcgatgccttccag
cgtctggaaaagatgctgatcggtaagatcgtcaatggcggtccgaagaagctggcgaag
ggtgccgcgatcaccaaggaatacctggccgacctggacaagtatcactggttcgacatc
cgcccggcggacgacgatgcggcgaccgcgctggaagcgatcaaggaatcgatcaacgag
aagcgccaccagttcgacctggccttcgaagagaagcgcaagaagctgacgcagggcgat
gaactgcagcctggcgtgcagaagatggtcaaggtctacctggccgtcaagcgccgcctg
cagtcgggcgacaagatggcgggccgccacggtaacaagggtgtggtctcgcgtatcgtg
ccggtggaagacatgccgtacatggccgacggtacgccggcggacgtggtgctgaatccg
ctgggtgttccgtcgcgtatgaacgtgggtcagatcctcgagacccaccttggctgggca
gcgaagggcctgggcatccgtatcggcgaaatgctggctcagcagatcaaggtcgaagag
atgcgcaagtacctgacgaccgtgtacaacgagtccggcgccaaggaagacatcgcctcg
ctgtccgacgacgagatcatgaagctggcggccaacctgaagaagggtgtgccgttcgcc
acgccggtgttcgacggtgcgcacgaatcggaaatccgccgcatgctggacctggcgtat
ccggacgagatcgccacgaagctgggcatgaccccgtccaagaaccaggtcacgatgtac
gacggccgtaccggcgaagcattcgagcgcaaggtcaccgtgggcgtgatgcacatgctg
aaactgcaccacctggtcgacgacaagatgcacgcccgctcgaccggcccgtactcgctg
gtgacgcagcagccgctgggtggtaaagcccagttcggcggccagcgcttcggtgagatg
gaggtgtgggcactggaagcgtacggcgcatcgtacgtgctgcaggaaatgctgaccgtg
aagtccgacgacgtgaatggccgtaccaaagtgtacgaaaacctcgtcaagggcgatcac
gtgatcgaggccggcatgccggaatcgttcaacgtgctggtgaaggaaatccgttccctg
ggtatcgacatcgacctggaacgcacctaa
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integrated database retrieval system
