Megalobrama amblycephala (Wuchang bream): 125246728
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Entry
125246728 CDS
T08212
Symbol
cnot1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125246728 (cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mamb03019
]
125246728 (cnot1)
Messenger RNA biogenesis [BR:
mamb03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125246728 (cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125246728 (cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Med13_C
Motif
Other DBs
NCBI-GeneID:
125246728
NCBI-ProteinID:
XP_048013659
LinkDB
All DBs
Position
LG15:18410366..18432114
Genome browser
AA seq
2387 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDADLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSADLNKTMMESSLADFMQEVGYGFCASVEECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIGLQSISNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKEVNPNLNFKEVTY
ELDHPGFLIRDSKGLQIVVYGVQRGLGMEVFPVDLIYRPWKHAEGQLSFIQHSLMSPEVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LSLGVSSTSHTPSMQGFPSLQGSAFSNPQSPAKAFSNLPNPNPSTAFPGINPLSSQLQGP
LSTSLTGLGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPYGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGQASTLVTTATTTTTVAKTTTITRPTAVGPKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMSQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGNLLRDKEKLKNLEEQLSAPKKETKPPE
EMLPIVTTDSVSFTAAPSTPATTTTCTATGPPTPQFSYHDINVYALAGLAPHININVNIP
LLQAHPQLKQCVRPAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAA
HHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCE
LACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKV
GGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLE
QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADTDL
LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDMHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRA
NAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHP
TTSPAIIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVGMLTAVLGIVVGVLI
QDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFV
YAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGT
LRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDML
SEINIAPRILTNFTGVMPSQFKKDLDSYLKTRSPVTFLSELRSNLQVVHSRIVSNEPGNR
YNIQLINALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNA
IANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIEL
IKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7164 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagctacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacggc
cctgaggcagaccggcatttattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtgtct
cttattacgaaaccaaattttatttcaacgctttgctacgccattgacaatcccctgcac
tatcaaaagagtttgaaaccatcacctcatttatttactcagctgagtaaagttctcaag
ctaagcaaggttcaagaggtgatttttggccttgctctgctgaactccagcaacgcagac
cttcgagggtttgctgctcaatttgtgaagcagaagctccctgaccttctccgctcgtac
gtggacgcggacctcggagggaatcaggaaggtggcttccaagacattgccatagaggtt
ctgcatctgctcctctcccatcttctgttcggtcagaagggctcgagcggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttcccgcaggagcgctgtcct
gtggtgctcgcaccactgctgtaccctgacaaacgggacattctcatggacaggatcctg
ccagactctgcagatttaaataagaccatgatggagagttcccttgctgacttcatgcaa
gaagttggctatggcttttgtgcgagtgtcgaagagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacggccagtcaggtggccagagtgctggggatgatggcccgcact
cactccgggctgtccgacggcattggcctacagtccatttccaatccagtgggtggaggg
atctggagtgatgggaaggacaagagtgatggctctcaggcccacacctggaatgttgaa
gttctgattgatgtggtcaaagaagtgaaccccaatctgaattttaaagaggtgacctat
gagcttgatcacccaggctttctgatccgggacagtaagggtcttcagatagtggtctat
ggggtccagaggggtctgggaatggaggtgttcccagtggatctcatctacagaccatgg
aagcatgcagaaggacagttatcgttcattcagcactccctgatgagtcctgaagtgttc
tgctttgctgactacccctgtcatacggttgccattgacatcctgaaggccccacccgag
gatgacaacagagagatagccacatggaagagcttggacctagtggagagcctcttgcgc
ctctctgaagttgggcattatgaacaggtgaagcagctctttagcttccccatcaagcac
tgcccagacatgctggtgctggcgctgctgcagatcagcacctcctggcacaccctgcgt
catgagctcatctccaccctcatgcccatcttcctgggcaaccaccccaactctgccatc
atcttgcactatgcctggcatggacagggccagtccccctccatccgccagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatacgaccaggccaagctatctcgc
atcctggatgtggctcaagacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgttattgaccttgctgcacttgcctctcgccgtgaatacctcaaacttgacaaa
tggctcactgacaaaatacgagagcacggggagccgttcatccaggcgtgcgtcacgttc
ctgaagagacgatgtccctccatcatgggtggtttggccccagagaaagaccagccgaag
agtgctcaacttcctcctgaaacactggctacaatgcttgcatgtctgcagtcttgtgct
gggagtgtgtctcaagagctgtcagagacaatcttgaccatggtggccaactgtagcaat
gtgatgaacaaggcccgacagccgccaccaggagtcctgccaaagggacgagctcccagc
accagcagcttagatgctatctcacctgttcaaatggaccctctctctgcgatgggctct
ttgagtctaggtgtctcatccacctctcataccccgagcatgcaaggattccccagcctg
cagggctctgcctttagtaatccccagtccccagccaaagccttctcaaatctaccaaac
ccaaaccccagcacagctttcccaggaatcaaccccctctcttcgcagctccaaggtcct
ctgagcacgagcttgactgggcttggctcaggtttgggaatgcccgccgtcagcagcgat
cccttcggcaccaggaagatgagcacaccggggctaaacccgcccacatttcagcagact
gacctttctcaggtgtggcccgaggcaaaccagcactttagtaaggagattgacgatgaa
gcaaacagctatttccagcgcatctacaaccatccgccacaccccacaatgtctgtggat
gaggtgctggaaatgctgcaaagatttaaggactcgaacatcaagcgggaacgggaagtt
tttaactgcatgctgaggaatctgtttgaggagtaccgattcttccctcagtatccagac
aaagagctgcacatcactgcatgcctctttgggggaatcattgagaagggcctagtgacg
tacatggcgctgggcttggccttacgatatgtgctggaagctttacgtaaaccttatgga
tcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcgtcaatagcccatttcctgcagttcccacaccat
ttacaagagtatatagagtatggccagcagtccagagaccctcctgtgaagatgcaaggc
tcaattaccaccccaggtagcctggctctagcccaggctcaagctcagtctcagacccct
aaagccccccaacctggccaagccagcaccttagtgaccacagccaccacgaccaccacc
gttgccaaaaccaccaccatcacgagacctacagctgttggaccgaagaaggacgtgcca
ccttcaatcaacaccacaaacattgacaccttgttggtggccacagaccagactgaaagg
atcgttgaacccccagagaatgttcaggagaagattgcattcatcttcaacaacttgtcc
caatcaaacatgtcccaaaaggtggaggagctgaaagagactgtgaaagaagaattcatg
ccctgggtctctcagtacctggtcatgaagcgtgtcagcattgagcccaacttccacagc
ctgtattctaacttcctggacacactgaaaaatccagagtttgttaaaatggttctcaat
gagacttacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttctca
gatcgatccctgctgaagaatctgggtcactggcttggaatgatcaccctagctaaaaac
aaacccatcctttacacagatctggagctaaagtctctcttgctggaggcttatgtgaaa
ggccagcaggagttactgtatgttgtcccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtattggct
gagctccatcaagagcatgacttaaagcttaacctcaagtttgagatcgaggtgctctgc
aagaatctgtctctggacatcagtgagctgaagccaggaaacctgctgagagacaaagag
aagctgaagaatttagaggagcagctctctgcaccaaagaaagagaccaagcctcctgaa
gagatgctgcctatagttactacagactctgtttcatttacagctgctccctcgactccg
gccaccaccacaacctgtactgccacggggccacccacaccacagttcagctaccatgac
atcaatgtgtatgccctggctggccttgccccgcacatcaacatcaatgttaacatccca
ctgctgcaggcccaccctcagctgaagcagtgcgtgagaccagcaatcgagcgtgccgta
caggagcttgtgcacccagtggtggaccgatcaatcaagatcgccatgaccacctgcgag
cagatagtccggaaagactttgcgctagactctgaggagtctcacatgcgcgtagctgcc
caccacatgatgcgcaacctgacagccggcatggccatgatcacctgtagagagccgctg
ctcatgagcattgccaccaacctgaagaacagctttgcagcagctcttagggctcccaca
ccccagcagagagagatgatggaagaggcggctgctcgcatcgcacaggacaactgtgag
cttgcgtgttgctttatccaaaagacggcagtggagaaagctggacctgagatggacaag
agactggcaactgaatttgagctgaggaagcacgctcgccaagaaggccgccgctattgt
gatcccatggtactcacctatcaggcagagcgtatgccagagcaaatcagactgaaggtc
ggtggagtggatcctaaacagctggctgtttatgaggagtttgcccgaaatgttcctggc
ttcctacccagtaacgacctgtctcagcccactggtttccttgcccaaccaatgaagcaa
caggcatggcccactgatgatgtggctcacatctatgataagtgcatttcggacctggag
cagcatctgcacgctattccacctgcgctggccatgaatccacagacccaggctatacgc
agcctcctggaggcagttgtcatggctaggaactcccgtgatggcattgctgccctgggc
cttttgcaaaaggctgtggagggtctgctagatgccaccagtggcgctgatactgatctg
ttgctaagctacagggagtgccacctgttggtgctgaaagctctacaggacggtcgtgcc
tacggcccacagtggtgcaacaaacaaatcaccagatgcctgattgagtgcagagatgaa
tacaagtacaacgttgaggccgtagagctcctcatcagaaaccacctggtcaacatgcag
cagtatgacatgcacctggctcagtccatggagaatggtctgaactacatggccgtggca
ttcgccatgcagctagtgaagctcctgctggttgacgaacgcagcgtgagccacatcaca
gaggcagatctcttccacaccatcgagacgttgatgaggaccagtgctcactccagagct
aacgctcctgaaggtttgccccagctgatggatgttgtccgctccaactacgaggccatg
atcgatcgtcaccatggtgggccaaacttcatgatgcactctgggatttctcaagcctct
gagtatgatgacccgccaggtcttagagagaaggcagagtacctgctgagagaatgggtc
aacctgtaccactcagcagctgcaggaagggacagcactaaggccttctctgcatttgtt
ggacagatgcaccagcagggcatcctgaagaccgacgacctcatcactcgcttcttccgg
ctgtgcacagagatgtgcgtggagatcagttaccgcgctcaagccgaacagcagcacccc
accaccagccctgccatcatcagggcaaagtgctaccataacctggatgcttttgttcgg
ctcattgcccttctggtcaaacactccggagaagcgaccaacacggtcaccaaaatcaac
ctcctcaacaaggttggaatgcttacagcggttctgggcattgtggtgggtgtgttgatc
caggatcacgatgtgaggcagactgagttccagcagcttccataccaccgaatcttcatc
atgcttctgctggagcttaatgcaccagagcatgtgctggagaccatcaacttccagacg
ctcactgccttctgcaacaccttccacatcctgaggcctactaaagcacctggttttgtg
tatgcttggctggagctcatctctcaccgcatcttcattgccaggatgcttgcacacacc
ccacaacaaaagggttggccaatgtatgcccagctgctgattgacttgttcaagtatctt
gcacccttcctaaggaatgttgaactcaacaaacctatgcaaattctctacaagggaaca
cttcgtgtgctgcttgtcctgctacatgacttcccagaattcctgtgcgactaccattat
ggcttttgcgatgtcatcccgcccaactgcatccagctgaggaacctgatcctgagtgcc
ttcccccgcaacatgaggcttccagacccctttacccctaatctgaaggtggatatgctg
agtgaaatcaacatcgctccccgcatcctcactaacttcactggtgtgatgccatcccag
tttaagaaggatcttgactcctacctcaagacccgctctcctgtcaccttcctctctgag
ctgcgcagcaacctgcaggtagttcacagcagaatcgtgtccaacgagcctggaaaccgc
tacaacatccagctgatcaacgctcttgtgctgtacgttggaacccaggccattgcccac
atccacaacaagggcagcactccctccatgagcaccatcacgcactcagcacacatggac
atcttccagaacctcgcagtcgatctagacactgaaggccgctatctgttcctgaatgcg
atagccaatcagctgcgttatccaaacagccacacacactactttagttgtaccatgctg
tatctgtttgccgaggccaacgctgaagccattcaagaacagatcaccagggtcctgctg
gagaggctgattgtgaacaggccgcacccatggggtctgctcatcaccttcatagagctg
atcaagaaccctgcctttaagttctggagccatgattttgtgcactgcgccccagagatt
gagaagttgttccagtcggtagctcagtgctgcatggggcagaagcaggcccagcaggtg
atggagggaacaggtgccagttag
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integrated database retrieval system
