Megalobrama amblycephala (Wuchang bream): 125263730
Help
Entry
125263730 CDS
T08212
Symbol
capn1b
Name
(RefSeq) calpain-1 catalytic subunit b
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04141
Protein processing in endoplasmic reticulum
mamb04210
Apoptosis
mamb04217
Necroptosis
mamb04218
Cellular senescence
mamb04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
125263730 (capn1b)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
125263730 (capn1b)
04217 Necroptosis
125263730 (capn1b)
04218 Cellular senescence
125263730 (capn1b)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
125263730 (capn1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mamb01002
]
125263730 (capn1b)
Enzymes [BR:
mamb01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
125263730 (capn1b)
Peptidases and inhibitors [BR:
mamb01002
]
Cysteine peptidases
Family C2: calpain family
125263730 (capn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_1
EF-hand_6
EF-hand_8
CAPN13-like_C_EFh
EF-hand_5
Motif
Other DBs
NCBI-GeneID:
125263730
NCBI-ProteinID:
XP_048038830
LinkDB
All DBs
Position
LG2:13672920..13690072
Genome browser
AA seq
704 aa
AA seq
DB search
MFSIGGISSHIYKERLHAEGMGTNDNALKYLNQDYEELKRECVESGRLFEDPCFPTVPQS
LGFKELAPNSSKTRGVQWIRPTELSNNPQFIVGGATRTDICQGALGDCWLLAAIGSLTLN
DKLLHRVVPHGQSFTDDYAGIFHFQFWQFGEWVDVVIDDRLPVKDKELMFVHSAEGNEFW
SALLEKAYAKLHGSYEALSGGSTTEGFEDFTGGVAEMYELRKAPKDLHRIIAKALERGSL
LGCSIDITSAFDMEAVTFKKLVKGHAYSVTGLREVNFRGSKERLIRIRNPWGQVEWTGAW
SDNSSEWNGIDPAEREEMNNHMEDGEFWMSFQEFKRQFSRLEICNLTPDALSEESLNFWN
TIKFNGTWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDDEVACTFMVALMQKDRR
RYRKQGQDMHTIGFALYEIPEEFRGSQSVHLKKDFFLRKSSCARSETFINLREVSARLKL
PPGEYLIVPSTFEPGKEADFVLRVFTEKQSETQEMDDEISFNLEDEEEVSEENIDNSFKK
MFAQLSGEDMEISVHELRTILNRVVGKHRDLKTDGFGMESCRCMVSLMDKDGSAKLGIVE
FQILWNKIRKWLGIFRQFDLDKSGTMSSYEMRLAVESAGFKLNNKLHQILVARYSDGDTI
DFDNFVCCLVKLEAMFKAFRELEREGSGIAELNISEWLYMTMCG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaattgggggaatttcgtcgcatatctacaaggagcgcttgcacgcagaaggg
atgggaaccaatgacaatgcactcaagtacctgaaccaggactacgaggagctgaagagg
gagtgtgtggagagcggtaggctgtttgaggacccctgctttcccacagtgccccagtca
ctgggcttcaaggagcttgcgccaaactcctccaaaacacgcggtgtgcagtggataagg
cccactgagctgtcaaacaatcctcagttcatagtgggaggagcgacacggacagatatt
tgccagggggctctaggtgactgttggctgttggctgccatagggtctctgactttaaat
gacaagctgcttcacagagttgttcctcatggacaaagctttacggacgattatgcaggc
atcttccacttccagttctggcagtttggcgagtgggtggacgtcgtgattgacgaccgc
ttgcctgtcaaggataaagagctaatgtttgttcactcagcagaaggaaatgagttctgg
agtgctcttttggagaaggcctatgccaagctgcatggctcatatgaagctctgtcggga
ggttccaccaccgaaggttttgaggacttcacaggcggagtggccgagatgtacgagctg
cgtaaagctcccaaagacctgcaccgcatcattgccaaagccttggagagaggctcgctg
ctgggctgctccattgatatcaccagtgcctttgacatggaggccgtgacctttaagaag
ctggtgaaggggcatgcgtactccgtcacaggtctcagagaggtgaatttccgtggcagc
aaagagaggttgatccgcatccgaaacccttgggggcaagttgaatggacaggggcttgg
agtgacaattcttctgagtggaatggaattgatccagcagaaagagaggaaatgaacaac
cacatggaggatggcgagttttggatgtcatttcaggagttcaaacgtcagttttctcgt
ctggagatctgtaacctcacaccagacgctcttagcgaagagtctttaaatttctggaac
acgattaagtttaacggcacctggaggcgaggaagtacagcagggggctgcaggaaccac
cccaatacattctggataaatcctcaatataagatcacgctactggaggaagatgatgat
ccagaggatgacgaggtggcctgcaccttcatggtggccttgatgcagaaggacagacgg
cgttaccgcaagcaaggacaggacatgcacaccatcggctttgctttgtatgagatccca
gaagagtttcgtggttcccagagtgtgcatctcaagaaggactttttcttgcgtaagtcg
tcctgtgcgcgctcggagaccttcattaatctgcgagaggtcagtgcgcgactgaaactg
ccaccgggcgagtatctcattgtcccttccacttttgagcctggaaaagaggctgacttc
gtactgcgagtcttcactgagaaacagtcagaaactcaagaaatggatgatgagatttca
tttaacctggaagatgaagaggaggtttcagaggagaatattgataactcttttaagaaa
atgtttgctcagctgtctggagaggacatggagatttcagttcatgagctcaggaccatt
ctgaaccgggtggtgggcaaacacagggacttgaagacagatgggttcggcatggagtcg
tgtaggtgcatggtcagcctgatggataaagatggcagtgcaaaactgggaattgtggag
ttccagattctatggaataaaatcaggaagtggctgggcattttcagacagtttgatctg
gataaatctggcacgatgagctcctatgaaatgcgcctggctgtggagtcagctggtttt
aaactgaataacaagctacatcagatactggtggcaagatattccgatggagatacaatt
gactttgacaactttgtctgttgcctggtcaaactggaggccatgttcaaggcttttaga
gagctggagagagaggggtcgggcatcgcagaactcaatataagtgagtggctgtacatg
accatgtgtggatga
DBGET
integrated database retrieval system
