Megalobrama amblycephala (Wuchang bream): 125274388
Help
Entry
125274388 CDS
T08212
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mamb04040
]
125274388 (scn1lab)
Ion channels [BR:
mamb04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
125274388 (scn1lab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
SieB
Motif
Other DBs
NCBI-GeneID:
125274388
NCBI-ProteinID:
XP_048056724
LinkDB
All DBs
Position
LG8:33724132..33770708
Genome browser
AA seq
2021 aa
AA seq
DB search
MAAQLLVPPGPDSFRPFVPESLAAIERRIAEEAAQRPKGERRPDDDDENGPKPNSDLEAG
KSLPFIYGDIPPNMVSVPLEDLDTYYSNQKTFIVLNRGKAIFRFNATPALYILSPFNPLR
RISIRVLVHSLFSFVIMCTILTNCAFMTLSNPPDWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVILMAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCVKIPEVNVTENRTTMLNYSIG
SELQNSTFNWTEYISDEKNYYYLPGRRDALLCGNSSDAGQCPEGFSCIKAGRNPDYGYTS
FDTFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMIFFVLVIFLGSFYLVNLILAVVAM
AYDEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQLELSLPLVAPNNGACAVIGWQVAAA
AATESGEYSGRGGLSEESSSGGSRLSSKSAKERRNRRKKRKQREEEEKADQEKFHKSASE
DSIRRSGFRLSIDANRLSYEKKCSTPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDFGS
ENDFADDEHSTFEDSDSRRGSLFVPRCIERRSSTVSHCSLAPRIMLPANGKMHCTVDCNG
VVSLVGGTSVPTSPIGRLLPEGTTTESDVRKKRSGSHQPSDYLDETVARKRALSVASILT
NTMEELEESRQKCPPCWYKFANSFLIWDCCPAWLKVKEIVNMIVMDPFVDLAITICIVLN
TLFMAMEHYPMTPGFNHVLSVGNLVFTGIFTAEMCLKVIALYPYYYFQEGWNIFDGIIVS
LSLMELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIV
FIFAVVGMQLFGKSYRECVCKISEDCELPRWHMDDFFHSFLIVFRVLCGEWIETMWDCME
VAGQSMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIHK
GIALVKSTLRQFLQSLCLAGSKPRALDEEKPLDDLHSDGKENCLSNHAPVAVDLTKDYLK
EGCVSPGNGVEGHVKYGIEEGDYMSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDV
EGSKEKLPVDAVLSSSEGSTVDIRPPGEGAESVELEPEESLDPEACFTEGCVMRFQCCQV
DVEKGKWKSWWNLRKTCFIIVEHNWFESFIIFMILLSSGALAFEDIYIEQRKTIKTVLEY
ADKVFTYVFILEMLLKWVAYGFAKYFTNAWCWLDFLIVDVSLVSLVANALGYSELSAIKS
LRTLRALRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYY
HCINITNEEIIPISVVNNKSDCQALINNNDTARWKNVKINFDNVGAGYLALLQVATFKGW
MDIMYAAVDSRDVELQPNYESNLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLG
GQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNKFQGIVFDLITKQAFDIVIMILICLN
MVTMMVETDDQTSEMDNILYWINLVFIVLFTGECVLKMISLRHYYFTIGWNVFDFVVVIL
SIVGMFLSEMIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIG
LLLFLVMFIYAIFGMSNFAYVKKEAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPIL
NKQDPDCDSETEHPGSLYRGNCGNPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATE
ESAEPLSEDDFEMFYEVWERFDPNATQFVEYNKLSDFADALDPPLRIAKPNKIQLIAMDL
PMVSGDRIHCLDILFAFTLRVLGEEGEMDALRGQMEDRFMASNPSKVSYEPITTTLRRKQ
EEMSASVIQRAFRRYRIRQTVKKASKAYRQQLQDGVVHIPEKEVLVIGKFQENSASDKTD
MTPSSASPPSYNSVAKSEKDKYEKERREKEDKAKDARDRKK
NT seq
6066 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagctgctcgttccacccggacctgacagcttccggcccttcgtgcccgag
tctctcgctgctatcgagcgccgcatcgcagaggaggcggcccaacggcccaaaggcgag
agacggcctgatgatgatgacgaaaacgggcccaaacccaacagcgatttggaggcggga
aaatccctgccctttatctacggagacattccacccaacatggtgtccgtcccgctggag
gatctggacacctactacagcaaccaaaaaacctttatagtattgaatcgtgggaaggct
atattccgctttaatgctacgccggccttgtatattttgagccctttcaatccattgagg
agaatctccatcagggtcctggtgcattcgctgttcagttttgtgatcatgtgcacaatc
ttgaccaactgcgccttcatgaccctcagcaatcccccggactgggccaagaacgtggag
tacacgttcacagggatctacaccttcgagtccctgattaagatcctggcacggggcttc
tgcgtggggaagttcactttcctgcgagacccctggaactggctggatttcagtgtcatt
ctgatggcatatgtaacagaatttgtggatctgggcaatgtctcagcactgagaaccttc
agggttttacgagcactcaaaactatatcagtgattccagggctgaagaccatcgttgga
gctctgatccagtccgtgaagaagctgtcagacgtgatgatcctgacagtgttctgtctg
agtgtgtttgctttgatcggactgcagctcttcatgggaaacctgcggcagaagtgtgtg
aagattccggaagtcaatgtcactgaaaaccgcactaccatgctgaactatagtatcggc
tcagagctgcagaactccacctttaactggacagagtacattagtgatgagaaaaattat
tattacctcccaggccgcagagatgctttgctatgtggaaattcaagcgatgcagggcag
tgcccagagggcttctcatgtataaaagcagggcgtaatcctgactacggctacacaagc
tttgacacgttcagctgggccttcctctcactcttccgactcatgacacaagacttctgg
gaaaacctctaccagcagaccctgcgtgcagctggaaagccctatatgatcttctttgtt
cttgtgatctttctgggctccttttatctggtgaatctcatcctggctgtggtggccatg
gcatatgatgagcagaaccaggccaccatagaagaggcccaacagaaagaagaagagttt
caagccatgctggaacagctaaaaagacaacaagaagaggcacagcttgaactgagtcta
cccctggttgcccctaacaacggtgcttgtgctgtgattggctggcaggttgccgcggca
gcagcaacagagagtggggagtacagcgggagggggggcttgtcagaggaaagctcctcc
ggggggtccagactcagctccaagagcgctaaagagagaaggaacaggaggaagaaaaga
aaacaaagggaagaagaagagaaagccgatcaggagaagttccataagtccgcctcggag
gacagtatcagacggtctggatttcgattatccatagatgccaaccgactctcatatgag
aagaaatgttccactccaaatcagtctcttctcagcattcgtggatctctcttctccccg
aggaggaacagtcgtgcgagtcttttcagttttcgtggtagagcacgagattttggctca
gagaatgattttgcagacgatgagcacagcacttttgaggatagcgacagtcgccgcgga
tcgctcttcgtacctcgttgtattgagagacgaagttccactgtcagccactgcagcctt
gcccccaggattatgctcccagcaaatgggaaaatgcattgcacagttgattgcaatgga
gtggtgtcactggtgggtgggacatctgtgccaacatcaccaatcggacgtttgttacca
gagggcacgaccactgagtctgatgtacgtaagaaacgttcaggatcacaccagccatct
gattatctggacgaaacagtagccagaaaaagagctctgagtgtggccagcattctgaca
aatactatggaagaactcgaggaatcacggcagaagtgccctccttgttggtacaaattt
gccaatagcttcctgatctgggactgctgtccagcctggctgaaggtgaaggagattgtg
aacatgatcgtgatggatccgtttgttgacctggccataaccatctgcattgttctcaac
accctcttcatggctatggaacactaccccatgacaccaggattcaaccatgtgctgtca
gttgggaacctggtattcacaggaatcttcacagcagagatgtgtctgaaagtaattgct
ctgtacccatattactacttccaagaaggctggaatatctttgacggcatcattgtaagc
ctgagtctcatggaactgggcctggccaatgttgagggactttcagtgttgcgctccttt
agattgttaagagtctttaagctggcaaagtcttggcccaccctgaacatgctgataaag
attattggtaactcagttggtgctttgggaaatctaaccctcgtcctggccatcattgtc
ttcatattcgctgtggttggaatgcagctgttcggaaagagttaccgagagtgcgtctgc
aagatttcggaggactgcgagttgccgcggtggcacatggacgatttcttccactccttc
ctgattgtattccgagtgctttgtggcgaatggatcgaaaccatgtgggactgcatggaa
gtggcgggacagtcaatgtgtctcatcgtcttcatgatggtcatggtcattggaaatctg
gtggtgttgaaccttttcctggccttgctgttgagctctttcagtgccgataatctcgcc
gccacagatgacgacagcgaaatgaacaacctgcagatcgctgtgggccgaatacataaa
ggtattgcactggtcaagtcaactttgcgccagttcctccaaagcctctgcctggccggc
tccaaaccacgcgcactagatgaagagaaaccccttgacgacctacacagcgacggcaag
gagaactgcttgtccaatcacgctccggtggccgtcgacctcactaaagactatctgaag
gagggttgcgtttcccctggtaacggggtggaaggtcacgtaaagtatggaattgaggaa
ggcgactacatgtcgttcatacacaatcccagcctcactgttacagtaccgattgcggtg
ggagagtcggactttgaaaatctgaacacggaagatttcagtagcgactcgtctgacgtc
gagggcagtaaagagaagctgcctgttgatgcggttctcagttcctcagaggggagcaca
gtcgatatacgacccccaggagagggggcggagtccgtcgagctggagccggaagagtcc
ctggacccagaggcctgctttacagaaggctgtgtgatgaggtttcagtgctgtcaggtc
gatgtggagaagggaaaatggaagagttggtggaatctcaggaaaacctgtttcatcatt
gtagagcacaactggtttgagtcctttatcatcttcatgattttactcagcagcggagca
ttggcttttgaggacatttacatcgagcagcgtaagacgataaagacggtgttggaatat
gcagataaagtcttcacatacgtctttattttggagatgcttctgaagtgggttgcttac
ggcttcgccaaatacttcaccaatgcttggtgctggcttgacttcctgattgttgatgtg
tcgttggtgagtttggtggcaaatgctcttggttactctgaactaagtgccattaagtcc
ctgagaactctgcgtgctcttagacctttgagagcattgtcacgcttcgagggaatgagg
gttgtagtgaatgccctgctgggagccataccttccatcatgaatgtgctgctggtgtgt
ctgatcttctggctgatcttcagcatcatgggggtgaacctcttcgctgggaaatactac
cattgcattaatatcaccaacgaagaaattattcccatcagtgtggtcaataacaagtcc
gattgccaagccctgattaataacaatgatacggcacgctggaaaaacgtgaaaattaat
ttcgataacgtgggagccggatacctggcactactgcaagtggccacgtttaaaggatgg
atggacatcatgtacgcagctgtggattctcgtgatgtggagctgcagcccaactacgaa
tctaacctttacatgtacctgtacttcgtcatcttcattatcttcggctccttctttacc
ctcaacctcttcattggtgtcatcatcgataacttcaatcagcagaagaaaaagcttgga
ggtcaggatatattcatgacagaagaacagaagaaatattacaatgccatgaagaaactg
ggatctaagaagcctcaaaagccaattcccaggcctacgaacaagtttcaaggcattgtc
tttgacttaatcaccaaacaagccttcgatattgtcattatgatcctgatctgcttgaac
atggtgaccatgatggtggaaactgatgaccagacaagtgagatggacaatattttgtac
tggataaacctggttttcatcgtcctcttcactggagaatgtgtgctcaagatgatctcc
ctccggcactactacttcaccattggctggaatgtgtttgacttcgtagttgtgattctg
tctattgttggcatgttcctctctgagatgattgagaaatattttgtatcgccaacctta
tttcgagtcatccgacttgccagaatcggtcgcattcttcgtctcatcaaaggcgccaaa
ggcattcgtaccctcctgtttgccttgatgatgtcacttcctgccttgttcaatattggc
ctccttctcttcctagtcatgtttatctatgccatctttggaatgtccaactttgcctat
gtgaagaaagaggcggggatcgatgacatgtttaactttgagacattcgggaactcgatg
ctttgcctgttccagatcaccacttctgcaggatgggacggcctcttggcgcccatcctg
aacaagcaagatccagactgcgacagcgaaacagagcacccgggcagcttgtaccgcggc
aactgcggaaacccctcggtcggcatcttcttcttcgtgagctacatcatcatctgcttc
ctgattgtggtgaacatgtacatcgctgtgatcttggagaacttcagcgtagccaccgag
gagagtgccgaaccgctcagcgaggatgacttcgaaatgttctacgaagtctgggagcga
ttcgaccccaatgctacgcagttcgtggagtacaacaagctttctgactttgcggatgct
ctggatcctccgttacgcatcgccaagccaaacaagatccagctcattgccatggacctg
cccatggtcagtggggatcgcatccactgcctggacatcctgtttgcctttaccctgagg
gtactgggagaggagggtgagatggatgccctgaggggacaaatggaggatcgtttcatg
gcctccaatccctccaaagtctcctacgagcctatcacgacaaccctccggaggaaacag
gaggagatgtcggcctccgtcattcaaagggccttccgacggtaccgcataaggcaaacg
gtaaagaaggcctctaaagcgtatcggcaacagctgcaggacggggtcgtgcatatcccg
gagaaagaggtgctcgtcatcggaaagtttcaagagaactctgcgtcggacaaaacggat
atgactccctcttctgcctctccgccatcttataacagtgtggccaagtcagagaaagac
aaatatgaaaaagagaggagagagaaggaggacaaagcaaaagatgcgagggacagaaaa
aaatga
DBGET
integrated database retrieval system
