Megalobrama amblycephala (Wuchang bream): 125274952
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Entry
125274952 CDS
T08212
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
mamb
Megalobrama amblycephala (Wuchang bream)
Pathway
mamb04510
Focal adhesion
mamb04512
ECM-receptor interaction
mamb04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mamb00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125274952 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125274952 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125274952 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mamb00535
]
125274952 (col9a2)
Proteoglycans [BR:
mamb00535
]
Extracellular matrix (ECM) proteoglycans
Others
125274952 (col9a2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125274952
NCBI-ProteinID:
XP_048057485
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Position
LG9:9970941..9995200
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AA seq
688 aa
AA seq
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MARLFRSLVLLQALCLALSQVTGPPGPQGPPGPPGPAGTPGADGIDGEKGPPGPPGPLGQ
KGEAGEPGPDGAPGEDGIDGLIGAKGERGPRGNPGPKGQPGPGGRSGPTGAGLPGLPGAP
GPIGLPGQIGPTGPKGVMGSPGPPGLPGPPGKPGPPGKFLGVEEGSADFQCPTNCPPGPK
GPQGIQGVKGHKGRAGVLGDPGSIGRLGTKGDVGISGEQGIPGPPGPQGLRGYPGMVGPK
GEMGPQGYKGISGPIGIPGRPGEEGPQGPPGEPGDKGDLGERGIRGPQGVVGKKGENGLP
GIDGKDGTPGIPGIKGASGQSGRPGAPGHQGDAGLPGMPGAKGELGVKGEPGPRGLMGMQ
GPPGPQGEPGPPGEAGMEGVPGPKGDRGERGPVGPPGIVGLPGSKGERGPMGVPGAQGLT
GTKGDKGFQGKVGSKGDVGDPGVEGLAGEKGEKGQSGEPGPKGQQGVTGDPGHNGPTGDP
GKPGDQGPAGLPGPRGLFGERGVPGMPGIQGPAGRDATDQHIIDVVLKMLQERLAAVAVS
AKRAVLGGAGVMGPPGPPGPPGPPGPQGPHGLTGSRGIPGIIGAPGQIGNTGLKGKRGAK
GERGDPGRPHPGQPGPPGLPGLPGLDGVARDGRPGERGPQGAAGEAGRPGKAGSPGLPGF
CEAAACLAASAYTSPRLQEAGTVKGPST
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggctagattgttcagaagcttggtcctgttgcaggcgctctgcttggccttatcgcaa
gtgaccggtccacccggaccccagggccctcctggtccccctggtcccgctggaactccc
ggtgccgacggcattgatggtgagaagggtcctcctggccctcctggaccactaggtcaa
aagggagaggcaggagaacctggtcctgacggagctccaggggaggatggcattgatggt
ttgattggtgctaaaggtgagagaggccctcgtggtaatcctggaccaaagggtcagcca
gggcctggtggacgatcaggaccaactggagccggactgcctggacttcctggagcacca
ggccccattggacttcctggacagattgggcctactgggccaaagggtgtcatgggaagt
cccggacctccaggattacccggacctccaggcaagcctggtccaccaggaaagtttttg
ggtgtagaggaagggagtgctgactttcagtgtccaaccaactgtccacctgggccgaag
ggtcctcagggcatacagggagtgaagggacataaaggtcgtgctggcgttttgggagat
ccaggaagcatcggaagattgggtacaaagggtgatgtcggcatctctggtgaacaggga
ataccaggccctccaggcccacagggtctgagagggtatccaggaatggtggggcccaaa
ggagagatgggaccacagggctacaaaggcatttcaggaccaatcggcatccctggacgc
cctggtgaagagggaccccaaggaccacctggagagcctggtgacaaaggtgacttggga
gaacgtggcatacgagggcctcagggagtggtcggaaaaaagggagagaatggtcttcca
ggaattgatggaaaagatggtactcctggcatcccaggaataaagggcgcttcaggacaa
agtggaagacctggagctcctggtcaccagggagatgctggtttgcctggtatgcccgga
gccaagggtgaactgggagttaagggtgagccgggacctcgaggtttgatgggaatgcaa
ggccctccaggacctcaaggagagcctggtcctccaggtgaagctggcatggagggagtc
ccagggccaaagggtgacaggggtgaaagaggaccagttgggcctcctggtattgttggc
ctgcctggaagtaagggagagagggggcccatgggcgtcccaggtgctcagggtctaact
ggaactaagggtgacaagggatttcaaggcaaagtgggatcaaagggagacgttggtgat
cctggtgtagagggattggctggggagaaaggagagaagggacaatctggggagcctggc
cctaagggacagcaaggtgtgactggtgatccagggcacaacggccccaccggagatccc
ggtaaaccaggagaccagggtcccgcaggcttacctggtcctcgtggcctgtttggagaa
agaggagttccagggatgccaggaatacaaggaccagctggtcgtgatgctaccgatcaa
cacatcattgacgtggtcctgaagatgcttcaagaaaggttagcagctgtcgcagtgagc
gctaagagagcagtgcttggcggagcaggcgtgatgggacctccaggtcctccaggacca
ccaggacctccaggacctcagggtcctcatggactgacaggcagccgtggcattcctggc
attatcggggccccaggccaaattggaaacactggtcttaaagggaaaaggggtgcaaag
ggagagagaggagatcctggacgaccacaccctggccaaccgggaccacctggactgcca
ggtcttccaggtcttgacggtgtggcacgcgacggtaggccaggagagcgaggaccacag
ggtgcagctggtgaggcgggccgccctggaaaagctggttcccctggtcttcctggattt
tgtgaagcagctgcatgtttggcagcctcagcctacacttctcccagactacaagaggca
ggaacagtgaagggcccatccacttaa
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