Marinobacter sp. JH2: MARI_23220
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Entry
MARI_23220 CDS
T06162
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
marj
Marinobacter sp. JH2
Pathway
marj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
marj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MARI_23220 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marj03021
]
MARI_23220 (rpoB)
03400 DNA repair and recombination proteins [BR:
marj03400
]
MARI_23220 (rpoB)
Enzymes [BR:
marj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MARI_23220 (rpoB)
Transcription machinery [BR:
marj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MARI_23220 (rpoB)
DNA repair and recombination proteins [BR:
marj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MARI_23220 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QBM18193
LinkDB
All DBs
Position
complement(2534633..2538709)
Genome browser
AA seq
1358 aa
AA seq
DB search
MTYSYTEKKRIRKDFSKLPSVMDVPYLLSIQLDSFRDFLQMEAAPEDRRETGLHAAFKSV
FPIVSYSGNAALEYVSYRIGEPVFDVKECQLRGVTYAAPLRVKVRLIIYDRESSNKAIKD
IKEQEVYMGEMPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDSVFVRIDRRRKLPASILLRSLGYTSEQMLAMFFETSKFSVGKEV
CNLELVPSRLRGDIATFDIKDNEGNVIAEEGRRITARHIKQLEKAGITELEVPTEYLYGR
VLAKDMIDASTGEILVECNTELTEEVMETILDAGVTELETLYTNDLDCGPFMSDTLRVDP
TRTPLEALVEIYRMMRPGEPPTKESAENLFNNLFFSEERYDLSAVGRMKLNRRLGREEST
GEGILTHEDIIDVLKTLIAIRNGQGQVDDIDNLGNRRVRCVGEMAENQFRVGLVRVERAV
RERLSLAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLATYARSNSYGFLESPYRKVV
EGVVTDELVYLSAIEESNYVIAQASAATDEGKRLTDELVTVRHQNEFTVAPPEAVNFMDV
SPRQVVSVAASLIPFLEHDDANRALMGANMQRQAVPTLISQVPLVGTGVERTVAQDSGVC
VTARRGGVIESVDAARIVVRVNQTETEAGDAGVDIYNLTKYTRSNQNTCINQRSIVREGD
EIARGDVLADGPSVDLGELALGQNMRIAFMPWNGYNFEDSILISEKVVQEDRLTTIHIQE
LTCVARDTKLGSEEITADIPNVGESALAKLDESGIVYIGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSQRVPTGTRGTVIDVQVFTRDGIEKDSRAQAIEKEQLDK
YRKDLKDEYRIVEGATFERLMVALKDQEVISGPGLKKGAKLDEAYLAELPRSDWFKLRMK
DEALSELLEKSEQGLEERKKEHEARFDDKKGKLQQGDDLAPGVLKIVKVYLAIKRRIQPG
DKMAGRHGNKGVISAVMPIEDMPYDEFGNTVDIVLNPLGVPSRMNVGQVLETHLGAAAKG
LGERISLMLDEQRKIAELRELLDQIYNHSDEVFKVDLDSLSDKEILELCNNLRGGVPMAT
PVFDGAEEAEVKRMLELAGLSTTGQTNLFDGRTGDEFDRPVTVGYMYILKLNHLIDDKMH
ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKM
YKNIVDGDHRMEPGMPESFNVLVKEIRSLGIDIELESE
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgacttactcctacaccgaaaaaaagcggattcgcaaagactttagtaaattgccttcc
gtgatggacgtcccctatttgctgtctattcagctggattcgttccgggacttcctgcaa
atggaagccgctcctgaagaccgccgggaaaccggtcttcacgcagcgttcaaatccgta
ttcccgattgtcagctactctggcaatgccgcgctcgagtatgtgagctatcggatcggc
gagccggtatttgacgttaaggaatgtcagctccggggcgttacgtatgcggcgccgctg
cgggtgaaagtccgcttgatcatttatgatagagaatcgtccaacaaggcgatcaaggac
attaaagaacaagaagtttacatgggcgaaatgcccctgatgaccgagaacggtaccttc
gttattaacggtaccgaacgcgttattgtttcccagctgcaccggtcgccgggtgtgttc
tttgaccacgacaagggcaaaactcactcctccggtaagctgttgtattcagcgcgagtg
attccttaccgtggctcatggttggacttcgaattcgatccgaaagattcggttttcgtt
cgtatcgaccgtcgtcgtaaattgcctgcttctattttgttgcggtctctgggctacacc
tcagagcaaatgctggccatgttctttgagaccagtaagttctccgtgggcaaagaggtt
tgcaatcttgagttggttccaagccgtctgcgtggtgacatagccaccttcgatatcaaa
gataacgaaggtaatgtcattgctgaagaagggcgccggattaccgctcgtcatatcaag
cagcttgaaaaagcgggcattaccgagctggaagtgccaaccgaatacctgtacggccgg
gttctcgccaaggatatgatcgacgcgtctaccggtgagattctggttgagtgcaacacc
gagctgaccgaagaggtaatggaaacaatcctcgacgccggtgtgacagaactcgaaact
ctttacaccaacgacctcgactgtggtccgttcatgtctgacaccttgcgtgtcgatccg
acccggactccgctggaagcgttggttgaaatctaccggatgatgcgtcctggtgagccg
ccaacgaaagaatctgcggagaacctgttcaacaacctgttcttctccgaagagcgctac
gacctgtctgcggttggccggatgaagctgaaccgtcgtctgggccgcgaagaaagcaca
ggcgaaggcatccttactcacgaagacatcattgacgttcttaagacgttgatcgcgatt
cgtaacggtcaaggccaggtagatgacatcgataacctgggtaatcgtcgtgttcgctgt
gtgggcgaaatggcggaaaaccagttccgcgttggtctagttcgtgtcgagcgtgctgtt
cgtgagcgtttgagcctggctgaaagcgaaggcttgatgcctcaggatctcattaacgcc
aaaccggttgctgcggccgttaaagagttctttggttcaagtcagctgtctcagttcatg
gaccaaaacaacccgctgtctgaagttactcacaagcgtcgtatctcggcattggggcct
ggtggtcttacccgtgaacgtgcaggctttgaggttcgagacgttcacccgactcactac
ggtcgtgtgtgccccatcgaaactccggaaggtccgaacatcggtctgattaactcgttg
gctacttacgctcgttccaactcctacggcttcttggaaagtccgtatcggaaggttgtt
gaaggtgttgtaaccgatgagctggtatacctgtcggcgattgaagagagcaactacgtt
atcgctcaggccagtgctgcgactgacgaaggcaagcggttgactgacgagctggttacg
gttcgtcaccagaacgaatttactgttgctcctccagaagcggttaatttcatggacgta
tctccgcgccaggttgtatctgtcgctgcgtctttgatcccgttccttgagcacgacgat
gctaaccgcgccttgatgggtgcgaacatgcagcgtcaagcggttccgactctcatttct
caggtgcctctggtaggtacgggtgttgagcgtaccgtagcccaagactccggcgtttgt
gttaccgcgcgtcgtggtggtgtgattgagagcgtcgatgcggctcgtatcgttgttcgt
gtaaaccagactgaaaccgaagctggtgacgcaggtgtagatatctacaacctgacgaag
tacacccgctccaaccagaacacctgtatcaaccagcgttccatcgttcgcgaaggcgac
gagattgctcgtggtgacgttcttgcggatggtccgtctgtcgatctgggtgagctggct
ctgggccagaacatgcgcatcgccttcatgccgtggaatggttacaactttgaggattcc
atccttatttccgagaaagtggtccaggaagatcgactgaccaccatccacattcaggaa
ttgacctgtgtggctcgtgataccaagttgggtagcgaagaaatcaccgcggatattccg
aacgtaggtgaaagtgcgctagccaagctggatgaatccggcatcgtctacatcggtgca
gaagtgggtgcgggggatattctggtcggtaaggtaacaccgaagggtgaaacccagctg
acaccggaggagaaactgctgcgtgccatcttcggcgaaaaagcgtctgacgtgaaagac
acgtcacagcgggttccgacaggtacccgtggtacggtgattgacgtccaagtcttcacc
cgcgatggcatcgaaaaagattcccgcgctcaagcgatcgagaaagagcagcttgataag
taccgcaaggatttgaaagacgaataccgcatcgttgaaggcgcgaccttcgagcgtttg
atggttgccttgaaagaccaggaagtcatcagcggccccggcttgaaaaagggtgctaag
ctggatgaggcgtacttggctgagcttccacgttcggattggttcaagctacggatgaag
gatgaagctttgagcgagcttctggaaaagtccgagcaaggccttgaagagcgcaagaaa
gagcacgaagcgcgctttgacgataagaaaggtaaattgcagcaaggcgacgatctggcg
ccaggcgtactgaagattgttaaggtttacctggcaatcaagcgtcgtatccagccaggc
gacaaaatggccggacgtcacggtaacaagggtgttatctccgcggttatgccgattgaa
gatatgccttacgacgagttcggtaataccgtcgacatcgttctgaacccgctgggtgta
ccttcgcggatgaacgttggtcaggttctggaaacccacttgggtgccgcagcaaaaggt
ctgggtgagcggatcagtctgatgcttgacgagcagcgaaaaatcgctgagcttcgtgag
ctgctggaccagatctataaccactcggacgaggtgttcaaagtagacctggatagcctt
agcgataaggaaatcctcgaactttgtaacaatctgcgtggcggcgttccaatggcgaca
ccggtatttgacggtgccgaggaagctgaggttaagcggatgcttgagttggccggcctg
agtactacagggcagactaacttgttcgacggccgcaccggtgatgaatttgatcgtccg
gttaccgttggctatatgtacatcctcaagctgaaccacctgattgacgacaagatgcac
gcgcgttcgactggttcgtacagtttggttacccagcagccgctgggtggtaaggctcag
tttggtggtcagcgattcggtgagatggaagtctgggcgttggaggcatacggtgccgcc
tacaccctgcaggaaatgcttaccgttaagtctgatgacgtcaacggccggaccaaaatg
tataagaacattgtcgatggtgatcatcgtatggagccgggcatgcccgagtccttcaac
gttcttgtcaaggaaatccgctcgttgggtatcgacatcgagctggaatccgagtga
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integrated database retrieval system
