Marinobacterium sp. LSUCC0821: HH196_07750
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Entry
HH196_07750 CDS
T08388
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
marl
Marinobacterium sp. LSUCC0821
Pathway
marl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
marl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HH196_07750 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
marl03021
]
HH196_07750 (rpoB)
03400 DNA repair and recombination proteins [BR:
marl03400
]
HH196_07750 (rpoB)
Enzymes [BR:
marl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HH196_07750 (rpoB)
Transcription machinery [BR:
marl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HH196_07750 (rpoB)
DNA repair and recombination proteins [BR:
marl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HH196_07750 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
7TMR-HDED
EF-hand_8
CENPU
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
QJD71599
LinkDB
All DBs
Position
complement(1611327..1615427)
Genome browser
AA seq
1366 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLGQVMDIPYLLAIQLDSYRKFLEADQTSEGRTEEGLHAAFNSV
FPIVSYSGNAALEYAGYRLGEPVFDVKECQQRGITYAAPLRVKVRLVIYDRDSSTKAVKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDSLFVRIDRRRKLPATILLRALGYQAEEILGMFFETTGWNLAGDK
VQMDLIPERLRGETMTFEITGPKGEVIVEAGRRITPRHIRQMQKDGMTQLETPLEYLAGK
STAVDIVDPATGEVLLPCNTELTEESVAKLIKAGITRIDTLYTNELDCGSFVSDTLRIDP
TRNQLEALVEIYRMMRPGEPPTKESAESLFENLFFSEERYDLSAVGRMKFNRRLGREEEV
GAGILSKEDILDVLKTLIEIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAV
RERLSMAESDNLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVFARTNDYGFLETPYRRVV
DNKVTDDIDYLSAIEESNFVIAQASATVDAKNQLTDELVTVRHMNETTVMPKERVQYMDV
SPRQVVSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGIERNVATDSGVC
VVAKRGGVIESVDASRVVVRVHDDEITAGDAGVDIYNLTKYVRSNQNTCINQRAIVTLGE
SVARGDILADGPSVDLGELALGQNMRIAFMPWNGFNFEDSILISERVVQEDRFTTIHIQE
LTCVSRDTKLGSEEITADIPNVGESALAKLDESGIVHIGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVKTGTIGKVIDVQVFTRDGVEKDERALAIEADELAS
IRKDLNDEFRIVETATFERLARALVGIKADGGAGLKKGEEITSEFLSGLAHDEWFKIRVS
DSAAAEMLEAAKKQLEERREQLDKRFEDKKSKLQTGDDLAPGVLKIVKVYVATKRRVQPG
DKMAGRHGNKGVISVIMPVEDMPYDENGEPVDVVLNPLGVPSRMNVGQILETHMGAAAKG
LGRKINAMLEVERKKAEKVKEVREFLEAVYNADHSGLACARKETIKSLSDDEVLTLAENL
KGGVPLATPVFDGAKESEIKALLRLADMDDSGQVTLFDGRTGDQFDRKVTVGYMYMLKLN
HLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSD
DVNGRTKMYKNIVDGDHSMDPGMPESFNVLIKEIRSLGIDIELENE
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcttattcatacactgagaagaaacgcatccgtaaggatttcagtaagctcggtcag
gtaatggacattccttacctgctcgcaattcaactggattcttaccgtaagtttctagag
gcagaccaaacttctgaaggtcgcaccgaagaaggtttgcacgctgcattcaattctgta
ttcccaatcgtttcttactctggaaacgctgcgctggaatacgcaggttaccgtttaggt
gaaccggtattcgacgttaaagagtgtcagcagcgtggtatcacttacgcagcgcctctg
cgcgttaaagtgcgtctagtgatctacgatcgcgattcgtctacgaaagcggttaaagac
attaaagagcaagaagtctacatgggcgaaattccgctcatgactgagaatggtaccttt
gtaatcaacggtactgagcgcgttatcgtatcgcagctccaccgttcacctggtgtattc
ttcgaccacgacaagggtaaaacacactcatctggcaagctgctatattcggctcgcatc
attccataccgtggttcatggttggactttgagtttgatccaaaagattcgctattcgtg
cgtatcgaccgtcgccgtaaactgcctgcaactatcctattgcgcgcacttggctaccag
gctgaagagatccttgggatgttcttcgagactacaggttggaacctggctggcgataaa
gtgcagatggatctgattccagagcgtcttcgcggcgaaacaatgacatttgaaatcact
ggccctaaaggtgaagtgattgtcgaagcgggtcgtcgtatcactcctcgtcacattcgt
cagatgcaaaaagatggcatgactcagctagagaccccacttgagtacctagcaggcaag
tcaactgcagttgatatcgttgatccggctaccggtgaagtgctacttccatgtaacact
gaactgacagaagagtcggtagctaagcttattaaagctggtatcactcgtattgatact
ctttacactaacgagctagattgtggttcgttcgtatcagacacactacgtattgaccct
actcgcaaccagttggaagcgttggtagagatctaccgtatgatgcgtcctggtgagcca
ccaactaaagagtctgctgaatcactattcgaaaacctattcttctctgaagaacgctac
gatctttctgcggtaggccgtatgaagttcaaccgtcgccttggtcgtgaagaagaggtt
ggcgcaggtatcctatctaaagaggatatccttgacgtacttaagacactgatcgaaatc
cgtaacggtaaaggcgttgtcgatgacatcgaccacctaggtaaccgtcgtatccgttct
gttggcgaaatggctgagaaccagttccgcgtaggtcttgttcgtgttgagcgtgctgtg
cgtgagcgcctaagcatggctgaatctgacaacctaatgccacaggatctgatcaacgct
aagccagttgctgctgcggtcaaagagttctttggttcgtctcagctttcacagttcatg
gaccagaacaacccgctttcagagatcacgcacaagcgtcgtgtctctgcgcttggccca
ggtggtctaacgcgtgagcgtgcaggtttcgaagtacgtgacgtacatccaactcactac
ggtcgtgtatgtcctatcgaaacaccggaaggtccaaacatcggtcttatcaactcgttg
gcagtatttgcgcgtactaacgactatggtttccttgagactccataccgtcgtgtagtc
gacaacaaagtgactgacgatattgattacctatcagcgattgaagagtctaacttcgtt
atcgcacaggcatctgcaacagtggatgctaagaaccagcttactgacgaacttgttact
gttcgtcatatgaacgaaacaaccgttatgccaaaagagcgcgttcagtacatggacgtc
tctcctcgccaggttgtgtctgtagcagcggcattgattccgttcctagagcatgatgac
gcgaaccgtgcattgatgggttcgaacatgcagcgtcaggctgtaccaactctacgtgcg
gataagccactcgtaggtactggtatcgagcgtaacgttgcgaccgactcaggcgtgtgt
gtggttgctaagcgtggtggtgtaatcgaatcagttgacgcgagccgtgttgtggttcgt
gtacacgatgatgaaattacagcgggtgatgcgggtgtagatatctacaacctgactaag
tatgttcgctcgaaccagaatacatgtatcaaccagcgtgcaatcgtaacgctaggtgag
agtgtggctcgtggtgatatccttgccgatggtccatctgtagacctaggtgagctagcg
cttggtcaaaacatgcgcatcgcgttcatgccttggaacggcttcaacttcgaggactcg
atccttatctctgagcgtgtggttcaggaagaccgtttcacgactatccatatccaagag
ctaacttgtgtatctcgtgatactaagttgggttctgaagagattactgcggatattcca
aacgttggtgagtcagcactagctaagctagatgagtcaggcatcgtgcacattggtgca
gaagtaggtcctggtgacattctagttggtaaagtgacacctaagggtgaaactcagctt
acaccagaagagaagctactacgtgctatcttcggagagaaagcgtctgacgttaaagat
acttcgctacgcgttaagacaggtacgatcggtaaagttatcgatgtacaggtattcact
cgtgacggcgttgagaaagacgagcgtgcacttgcaattgaagcagatgagcttgcgtcg
atccgtaaagaccttaacgatgagttccgtatcgttgagacagctacattcgagcgtcta
gcgcgtgcacttgttggtatcaaagctgacggtggtgctggtcttaagaagggtgaagag
attacctctgaattcctatctggccttgcacacgatgagtggttcaagattcgcgtatct
gactctgctgcagcagagatgcttgaagcagctaagaagcagcttgaagagcgtcgtgag
cagcttgataagcgtttcgaagataagaaatctaaactgcagacaggtgatgacctagca
cctggcgtactgaagattgttaaggtttacgttgctactaagcgtcgcgtacagcctggt
gacaagatggcaggccgtcacggtaacaagggtgttatctctgtaatcatgccagttgaa
gatatgccttacgatgagaacggcgaaccagtagatgtggttctaaacccactgggtgta
ccgtctcgtatgaacgtaggtcagatcctagagactcacatgggtgctgcagctaaaggc
ctaggtcgtaagatcaacgctatgcttgaagtagagcgtaagaaggctgaaaaagttaaa
gaagttcgtgagttccttgaagcggtatacaacgcagatcacagcggtctagcgtgtgcg
cgtaaagagactatcaagtcgctaagcgatgacgaagttctaacacttgcagaaaacctc
aaaggcggtgtgccactagctacaccagtatttgatggtgctaaagaatctgaaatcaaa
gcgctgttgcgtcttgcagacatggacgatagtggtcaggtgaccctatttgatggccgt
actggtgatcagttcgaccgtaaggtaaccgttggttacatgtacatgctgaaacttaac
cacttggttgatgacaagatgcacgcacgttcgaccggctcttacagccttgttactcag
cagccgctgggtggtaaagcgcagttcggtggtcagcgcttcggtgagatggaggtatgg
gcacttcaggcgtacggcgcagcctacacgctacaagagatgctcactgtcaaatccgat
gacgtgaatggtcgtacgaagatgtataagaacatcgtcgatggcgaccacagcatggat
ccaggcatgcctgaatcatttaacgtgctgatcaaagagatccgttctctcggtatcgat
atcgagctagagaacgagtaa
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integrated database retrieval system
