KEGG   Massilia sp. B-10: LP420_32515
Entry
LP420_32515       CDS       T10663                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
masb  Massilia sp. B-10
Pathway
masb02024  Quorum sensing
Brite
KEGG Orthology (KO) [BR:masb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LP420_32515 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    LP420_32515 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:masb03019]
    LP420_32515 (hfq)
   03036 Chromosome and associated proteins [BR:masb03036]
    LP420_32515 (hfq)
Messenger RNA biogenesis [BR:masb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     LP420_32515 (hfq)
Chromosome and associated proteins [BR:masb03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    LP420_32515 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SRP14
Other DBs
NCBI-ProteinID: UUZ47799
LinkDB
Position
4574943..4575179
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI
STVVPARAVNLNLESEAE
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaactgttacaagacccattcctcaatgccttgcgcaaagagcat
gttccggtctcgatttacctggtcaacggcatcaagctgcaggggcacatcgagtccttc
gaccagtacgtggtcctgctgcgcaacacggtcacgcagatggtctacaagcacgcaatc
tcgaccgtcgttccggcgcgcgcagtcaatctcaaccttgagtccgaagctgagtaa

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