Myxocyprinus asiaticus (Chinese sucker): 127437398
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Entry
127437398 CDS
T08782
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127437398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127437398
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127437398
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127437398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127437398
NCBI-ProteinID:
XP_051548199
LinkDB
All DBs
Position
48:complement(17706301..17752870)
Genome browser
AA seq
2438 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHSPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLCYAIDNPLHYQKSLKPSPYLFTQLSKVLK
LSKVQEVIFGLALLNSSNADLRGFAAQFVKQKLPDLLRSYVDSDLGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGSSGVGQEQIDAFLKTLCRDFPQERCPVVLAPLLYPDKRDILMDRIL
PDSGELNKTMMESSLADFMQEVGYGFCASFDECRNIILQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSITNPVGGGIWSDGKDKSDGSQAHTWNVEVLIDVVKDVNPNLNFKEVTY
ELDHPGFLIRDTKGLQMVVYGIQRGLGMEVFPVDLITRSWKHAEGQLSFIQHSLMNPDVF
CFADYPCHTVAIDILKAPPEDDNREIATWKSLDLVESLLRLSEVGHYEQVKQLFSFPIKH
CPDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIM
HSMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDK
WLTDKIREHGEPFIQACVTFLKRRCPSIMGGLAPEKDQPKSAQLPPETLATMLACLQSCA
GSVSQELSETILTMVANCSNVMNKARQPPPGVLPKGRAPSTSSLDAISPVQMDPLSAMGS
LNLGVSSTSHTSSMQGFPSLQGSAFSNPQSPAKAFSTLPTPNHSTAFPGITPLSSQLQGP
LSTSLTGIGSGLGMPAVSSDPFGTRKMSTPGLNPPTFQQTDLSQVWPEANQHFSKEIDDE
ANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLRNLFEEYRFFPQYPD
KELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKD
YPQYCQHLASIAHFLQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSLALAQAQAQSQTP
KAPQPGQASTLVTTATTTTTAAKTTTITRPAPVGLKKDVPPSINTTNIDTLLVATDQTER
IVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHS
LYSNFLDTLKNPEFVKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKN
KPILYTDLELKSLLLEAYVKGQQELLYVVPFVAKVLESSLRSVIFRPQNPWTMGIMNVLA
ELHQEHDLKLNLKFEIEVLCKNLSLDISELKPGYLLRDKEKLKNLEEQLSAPKKETKPPE
EMLPIVTTGRTHKPSFVLWHISVNFLILNLIETAYVFCILFKPTVDSAVPFSAAQSTPAT
TTTCTATGPPTPQFSYHDINVYALAGLAPHININVNVPLLQAHPQLKQCVRPAIERAVQE
LVHPVVDRSIKIAMTTCEQIVRKDFALDSEESHMRVAAHHMMRNLTAGMAMITCREPLLM
SIATNLKNSFAAALRAPTPQQREMMEEAAARIAQDNCELACCFIQKTAVEKAGPEMDKRL
ATEFELRKHARQEGRRYCDPMVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFL
PSNDLSQPTGFLAQPMKQQAWPTDDVAHIYDKCISDLEQHLHAIPPALAMNPQTQAIRSL
LEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPDLLLSYRECHLLVLKALQDGRAYG
PQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFA
MQLVKLLLVDERSVSHITEADLFHTIETLMRTSAHSRANAPEGLPQLMDVVRSNYEAMID
RHHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQ
MHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHPTTSPAIIRAKCYHNLDAFVRLI
ALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIMLLLELNA
PEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGWPM
YAQLLIDLFKYLAPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVIPP
NCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPSQFKKDLDSY
LKTRSPVTFLSELRSNLQVGGVTLNLKNHSPQEPFTTRVTSNKVSNEPGNRYNIQLINAL
VLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAVANQLRYPN
SHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFW
SHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7317 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggctttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacaacatattgtgaatcgtcacagc
cctgaggcagaccggcatctattacgctgtctcttttcccatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccaccagacacaatttctgatccaggagtgtgtctct
cttattacaaaaccaaattttatttcaacactctgctacgccattgacaatcccctgcac
tatcaaaagagtttgaagccatcaccttatttatttactcaactgagtaaagttctcaag
ctaagcaaggtccaggaggtgatttttggccttgctctgttgaactcgagcaacgcagac
cttagggggtttgctgctcagtttgtcaagcagaagctcccagacctcctccgatcatac
gttgactcagacctcggagggaatcaggaaggtggcttccaagacattgccatagaggtt
ctgcatctgctcctctcccatcttctttttggtcagaagggctccagtggagtcggacaa
gagcagattgacgcgttcctcaaaacactgtgcagagatttccctcaggagcgctgtcct
gtggtgctcgcaccactgctctaccctgacaaacgggacattctcatggaccggatccta
ccagactctggagagttaaataagaccatgatggagagttcccttgctgacttcatgcaa
gaagttggctatggcttttgtgcaagttttgacgagtgcaggaacataatcctgcagtat
ggggtgcgagaggtgacagccagccaggtggcccgtgtgctgggtatgatggcccgcact
cactccgggctatccgatggcatccccctacagtccatcacaaatccagtgggcggtggg
atctggagtgatggcaaggacaagagtgacggctctcaggctcacacctggaatgtggaa
gttctgattgatgtggtcaaagatgtgaaccccaatctgaatttcaaagaggtgacctat
gagctggaccaccctgggttccttatccgggacactaaggggcttcagatggtggtttat
gggatacagaggggtctggggatggaggtgttccctgtggatctcattaccagatcatgg
aagcatgcagagggacagctgtcattcattcagcactcgctgatgaatcctgatgtgttc
tgctttgctgactacccttgtcacactgtcgccattgacatcctgaaggcccctcctgag
gatgacaacagagagatagccacatggaagagcctggacctggtagagagcctcttgcgt
ctctctgaagttgggcattatgaacaggtgaagcagctcttcagcttccccatcaagcac
tgcccggacatgctggtgttggcactgctgcagatcagcacctcatggcacaccctgcgc
catgagctcatctccaccctcatgcccatattcctgggcaaccaccccaactccgccatc
atcttgcactatgcctggcatggacagggccagtccccctccattcgtcagctgatcatg
cactctatggccgagtggtacatgagaggagagcaatatgaccaggccaagctatctcgc
atcctggatgtggctcaagacttgaagtctctatcgatgctgctgaatggtactccattt
gcctttgtaattgatcttgctgcacttgcctcacgccgtgaatacctcaaacttgacaaa
tggctcactgataaaatccgtgagcacggggagccattcatccaggcgtgcgtcacgttc
ctgaagaggcgctgtccctccatcatgggtggtttagccccagagaaagatcagccgaag
agtgctcaacttcctcctgaaactctggccaccatgcttgcatgtctgcagtcttgtgct
gggagtgtatctcaagagctgtccgagacaatcttgactatggtggccaactgtagcaat
gtgatgaacaaggctcggcagccgccaccaggtgtcctgccaaagggacgagcacccagc
accagcagcttagatgctatctcacccgtgcagatggaccctctctctgcgatgggctct
ctgaatttaggtgtctcatcgacctctcacacctcaagcatgcaaggattccccagcctg
cagggctctgccttcagtaacccccaatccccagctaaggccttctcaaccctgcccacc
ccaaaccacagtacagctttcccaggaatcacccccctgtcctctcagctgcaaggtcct
ctgagcacaagcttgactgggattggctcaggtttgggcatgccagccgtcagcagcgac
cccttcggcaccaggaagatgagcacaccagggctgaacccgcctaccttccagcagact
gacctctctcaggtgtggcccgaggcaaatcagcactttagtaaggagattgacgatgaa
gcgaacagctactttcagcgcatctacaaccatccgccacacccaaccatgtctgtggat
gaggttctggaaatgctacagaggttcaaggactcaaacattaagcgggaacgggaggtt
tttaattgcatgttgaggaatctgttcgaggagtaccggttcttcccccagtatcctgac
aaagagctgcacatcaccgcctgcctcttcggaggaatcatcgaaaagggcctagttacg
tacatggcgctgggcttggccttacgatatgtcctggaagccttacgcaaacctttcgga
tcaaagatgtattactttgggatcgctgcactagatagatttaaaaatagactgaaggac
tatccccagtactgtcagcacttggcttctatagcccatttccttcagttcccgcaccat
ttacaagagtatattgagtatggccagcagtcaagagaccctcctgtgaagatgcaaggc
tccataaccaccccgggcagcctggctttagcccaagctcaggcccagtcccagaccccc
aaagccccccagcctggccaagccagcaccctggtgaccacagccaccacaaccaccacc
gctgccaaaactaccaccatcaccagacctgcacctgttggactgaagaaggatgtgcca
ccttcaatcaacaccacaaacattgacactctgctagtagccacagaccagactgaaagg
attgtagagccccctgagaatgttcaggagaagattgctttcatcttcaacaacttgtcc
cagtcaaacatgacacagaaggtggaagagctgaaagagaccgtgaaggaagaattcatg
ccctgggtgtctcagtacctggtcatgaagcgtgtcagcattgagcccaactttcacagc
ctttattccaacttcctggacacactgaaaaaccctgagtttgtcaagatggttctcaat
gagacttacagaaacatcaaggtccttcttacctctgataaggcagctgctaacttttct
gatcgatccctgctgaagaatttgggtcactggcttggaatgatcaccctcgctaaaaac
aaacccatcctgtacacagacttggagctcaagtctcttctgctggaggcttatgtaaaa
ggccagcaggagttgctgtatgttgttccctttgtggccaaagtcttggaatcaagtctg
cggagtgtgatcttcagaccgcagaacccttggaccatgggcatcatgaatgtactggct
gagctccaccaggaacatgacttaaagctcaacctgaagtttgagatcgaagtgctctgt
aagaacctgtctctggacatcagtgagctgaagccaggatacctgctgagagacaaagag
aagctgaagaacctggaggagcagctctctgcaccaaagaaagagacaaagcctcctgaa
gagatgttgcctatagttactacgggtagaacacataaacccagctttgttctctggcat
atttcagtcaattttctaattttgaatcttattgaaactgcttatgttttctgtatcctt
tttaaaccaacagtagactcagcagtcccattttcagctgctcagtcaactccagccacc
accactacctgtacagccaccgggccgcccacaccacagttcagctaccacgacattaac
gtctatgccctggccggtttggccccacacatcaacatcaatgtcaacgtcccccttctg
caggcccaccctcaactgaagcagtgtgtgagaccggctatcgagcgtgccgttcaggag
ctggtacaccctgtggtggaccgttcaatcaaaatcgccatgaccacctgcgagcagatc
gtcaggaaggactttgcactggactctgaggagtctcacatgcgtgtggccgcccatcac
atgatgcggaacctgaccgctggcatggccatgatcacttgcagagagccactgctcatg
agcatcgccaccaacctgaaaaacagctttgctgcagctcttagggctcccacaccccag
cagcgagagatgatggaagaggcggctgctcgcatcgctcaagacaactgtgagctagcg
tgctgcttcattcagaagacagcagtggaaaaagccggacctgagatggacaagagactg
gcaactgagttcgagctgaggaagcacgctcgccaagaaggccgtcgctactgtgacccg
atggtgctcacctatcaggctgagcgcatgccagagcagatcagactgaaggtgggtgga
gtagatcctaaacagctggctgtttatgaagagttcgcccgaaacgttccaggcttccta
cccagcaatgacctgtctcagcccactggattccttgcccagccaatgaagcaacaggca
tggcccactgatgacgtggctcacatctatgacaagtgcatttcagacctggagcagcac
ttgcacgccattccacctgccctggctatgaacccacagacccaggccatacgcagcctc
ctagaggccgtggtcatggccaggaactcccgtgatggtatcgctgctctgggacttttg
cagaaggctgtggaaggcctgctggatgccaccagcggtgctgatcctgatctgttgcta
agctacagagagtgccacttgctggtgctgaaagccctacaggatggccgtgcatatggc
ccacaatggtgcaacaaacaaatcaccagatgcctgattgagtgcagagacgaatacaag
tacaacgttgaggctgtggagctcctgatcagaaaccacctggtcaacatgcagcagtat
gatttacacctggctcagtcaatggagaacgggctcaactacatggccgtggcattcgcc
atgcagctggtgaaactactattggttgatgaacgcagtgtgagccatatcactgaagct
gatctcttccacaccatcgagacgttgatgaggaccagtgcccactccagagccaatgca
cctgaaggtttgccccagctgatggatgtggtccgctccaactatgaggctatgatcgat
cgtcatcatggtgggccaaacttcatgatgcactctgggatttctcaggcgtctgagtat
gatgatccaccaggcctcagagagaaggcagagtacctgcttagagaatgggtcaacctc
taccactcagcagctgctggcagagacagcaccaaggccttctctgcatttgttggacag
atgcaccagcagggcatcctgaagaccgatgacttgatcactcgcttttttaggttatgc
acagagatgtgtgtggagatcagttaccgtgctcaagctgaacagcagcacccgaccacc
agcccagccatcatcagggccaagtgctaccataacctggacgcctttgttcggctcatc
gccttactggttaaacattctggagaggccaccaacacggtcaccaaaatcaacttgctt
aacaaggttctgggcatcgtggtgggtgtattgatccaggatcatgatgtgaggcagacg
gagttccagcagctgccataccaccgaatcttcatcatgctcttactggagctcaatgct
ccggaacacgtactggagaccatcaacttccagaccctcactgccttctgcaacaccttc
cacatccttcggccgactaaagctcctggattcgtgtatgcttggctggagctcatctct
caccgcatattcattgccaggatgcttgcacacaccccacaacagaagggatggcccatg
tatgctcagctgctgattgacttgttcaagtatcttgcacccttcctaaggaatgttgaa
ctcaacaaacctatgcaaattctctacaagggaacactccgtgtgttgcttgtcctgctc
catgacttcccagaattcctgtgcgactaccattatggcttctgtgatgtcatcccgcca
aattgcatccagctgaggaacctgatcctgagtgccttcccccgcaacatgaggcttcca
gaccccttcacccctaatctgaaggtggatatgctgagtgagatcaacattgctccccgc
atcctcaccaacttcaccggtgtaatgccatcccaatttaagaaagatcttgactcttac
ctgaagacacgctctcctgtcaccttcctttctgagctgcgcagcaacctgcaggtaggg
ggcgtcactctgaatctcaagaaccattcgcctcaagaaccattcacaacaagagtaaca
tctaacaaggtgtccaatgagccaggcaaccgctacaacatccagctgataaatgctctg
gtgctgtatgtgggcacccaggctattgcccacatccacaacaagggcagcactccctcc
atgagcaccatcactcactcagcacacatggacatcttccagaacctcgcagtcgacctg
gacactgaaggccgctatctgttcctgaatgcggtagccaatcagctgcgttacccaaac
agccacacgcactacttcagctgtaccatgctgtatctgtttgctgaggccaacgctgaa
gccattcaagagcagatcactagggtccttctggagaggctgattgtgaacaggccacac
ccatggggtctgctcatcaccttcattgagctgatcaagaaccctgcctttaagttctgg
agccacgactttgtgcactgtgccccagagatcgagaagttgttccagtcagtggcacag
tgctgcatggggcagaagcaggcccagcaggtgatggagggaacgggtgccagttag
DBGET
integrated database retrieval system
