Myxocyprinus asiaticus (Chinese sucker): 127440503
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Entry
127440503 CDS
T08782
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
masi
Myxocyprinus asiaticus (Chinese sucker)
Pathway
masi03008
Ribosome biogenesis in eukaryotes
masi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127440503
09123 Folding, sorting and degradation
03018 RNA degradation
127440503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masi03019
]
127440503
03009 Ribosome biogenesis [BR:
masi03009
]
127440503
03016 Transfer RNA biogenesis [BR:
masi03016
]
127440503
03036 Chromosome and associated proteins [BR:
masi03036
]
127440503
Messenger RNA biogenesis [BR:
masi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127440503
mRNA degradation factors
5'-3' decay
5' exonucleases
127440503
Ribosome biogenesis [BR:
masi03009
]
Eukaryotic type
Pre-60S particles
RNases
127440503
Transfer RNA biogenesis [BR:
masi03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127440503
Chromosome and associated proteins [BR:
masi03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127440503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
127440503
NCBI-ProteinID:
XP_051553085
LinkDB
All DBs
Position
5:complement(23392584..23423728)
Genome browser
AA seq
1698 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHYKLSTDKTWQGVNVYLSGHETPGEGEHK
IMEFIRFESTKPGHNPNTRHCLYGLDADLMMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPTLGGYLNENGHLNLAHFEKYLEKLSDFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEADVKDMKKSKSSEGSLCLAALGVKDSNSSPGRGTEEDGE
DDDMFETEFRQYKRTYYMTKMGVEVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWYY
PYHYAPFLSDVRNISSLTLTFDLAKPFMPFDQLLGVLPAASKDLLPQCYQHLMTSLSSPI
VEYYPQDFKTDLNGKQQEWEAVVLIPFIDENRLLAAMEPYTHKMTPSEKARNRHTECSVY
CFDKEQDYAYNSPLPQILPSIVHCHARQTAIPIDAWRVPLDHVGRRIDRGALYFCGFPTL
QHIQHKFYKKKSGVMVFQQSSRGENMILEVLDSQELEQVDDVAALVLGKCVFVNWPHLME
ARVVAVSDGEIKYSLEEPSGSQTLYLGNTPPPAKVTNLTDKEQKEWVKEVQGLTEHFGKR
KGIVISETDVVVYAQLLTGRKYVIGHSGKVHLEKQFSKQVLPFPYQTIVKDIKTFDSSLT
RFKTLEELFSPGTVVFMVGNPYYGTMGDVQDSSDVISEGRVRVVFSVPCEPQLDALIQNQ
HKYSVKYSPGYVLASRLGIISYLVSRFSGSIFIGRGSKKNPHGEQKANVGLNLKFNKKNE
EVPGYTKRTEKEWLYSAAVEELLAEYLERFSEVFDFVARNSHDDVFFEDDIWPGEDENGS
EKVQEIQTWLKTHPVSSSSRASCDLQILDAGIVEKIEEELEKTKAKKMNKKVRVTVKPHL
LFRPLEQQHGVVPDPEAEYHLFDRVINVRESFSVPLGLRGTVIGIKGAEREAEVLYEVLF
DEEFAGGLTIRCSPGRGYRLPPSALINLSHGSRKEQGSHKLTAIVKPQPSSSHFAHKGQL
GGLNHSPCSAFIPTQHQNGRQSFNLRADAQSNRHLPHKALNQKNQHKDSGTEREFSNVWQ
SLQSSGMPQKPPAHWQNNAGKSSGSVPQQQQLEGQNKQIQGNDSNKPAASGNIRLLKRNE
DLNAALLQGPSNKVSTEFEELIANLKISKESEPILPHSPKEPKSQSGEPLSPQSFAMKGT
LVLKEMLKIDSSATSSSAPDSTSLSGGQSSEPPNAQQQSKRRSSKKLAARMNTPQTEAPA
PPLAGQPPILPSIAVELGRVCMGLGMGPPEFAFLRNRQSLTVCQVKLSNGLQVHGPQCQS
ESESKEKAALFALQRLNSLGSFPLPPPIFPGVQQMRPLAPHPSMFSQPPGGLLMPPQGYG
PLHWGMQLPNQGQPFYGGTFPGARPPASTAAGGSHNQFVPLQVTKKRVSGRSKQVSTSAA
NAGQIQSSGPSQPAASVSVPLSAPKTPPPTRNYEPSEKPTPTTPKTPRQNANPHTPGSAS
KRKQRKLAVNFEAAKVTD
NT seq
5097 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcctaaattttaccggtggatatccgagcgctatccgtgtctgagtgaagtt
gttaaagagcatcagatcccagagtttgacaacctttatttagatatgaatggaatcatc
catcaatgttcccaccccaatgatgaggacgtacacttccgtatttctgaggagaagatt
ttcgctgacatttttcactacctggaggtgctcttccgcattatcaagcccaggaaagtg
tttttcatggcggtggatggagttgcacccagggccaagatgaaccagcagcgtgggagg
agattcaggtcagcaaaagaagctgaggagaaaatcaagaaggctttggagaaaggcgaa
gttttacccacagaggctagatttgactcgaactgcatcacgcctggaacggatttcatg
gccagactacaagagcagcttaaatattttgttcactataagctgtccacggacaaaaca
tggcaaggagtaaatgtgtatttgtctggtcatgagacccctggtgaaggagagcacaag
atcatggagttcattcgctttgagagcaccaagccgggtcataacccaaacacaagacac
tgcctttacggtttggatgctgacctgatgatgcttggtttgacaagccatgagcctaat
ttttctctcctcagagaggaggtacgcttcggagggaaaaaatcacaaaagaggataaca
gctcctgaggagacgacctttcatctgctccacctctctcttatgagggaatacattgac
tatgagttttctgagctcaggaaaaagatctcatttgagtatgacctggagcggatcata
gatgactgggtcctaatgggtttcctggtggggaacgacttcatccctcatcttcctcac
ctgcacatcaaccatgatgcactgcctctgctctaccgaacttacatcagtgtgctgccc
actctcgggggctacctgaatgaaaacggtcacctcaacctcgcccactttgagaagtac
ctggaaaagctatctgattttgaccgtgaacacttcagcgaggtgtttgtggatctgaag
tggtttgagagtaaggtggggaacaaatacttgaatgaggcagctgggctggcggccgag
gaggctgatgtcaaagacatgaagaagagtaagtcttcagagggctccctctgtctagct
gcacttggagtcaaggattctaacagcagtccaggaagaggcacagaggaggatggtgag
gatgatgacatgtttgaaacagagtttcgacagtataagcgcacctattacatgaccaag
atgggtgttgaagtcgtttcagatgaattcttggccaatcaggctaaatgttacgtggaa
gggatccagtggatcttacactactactaccatggagttcagtcctggagctggtattat
ccgtaccactatgctccattcctctctgatgtgagaaacatctctagtctcactttgacc
tttgacctggccaaacccttcatgccattcgaccagctcttgggtgtcctgcctgcagcc
agcaaagatctgcttccacagtgttaccagcaccttatgacgtcactgagctcgcccatt
gtcgagtattacccacaagacttcaaaacagacctgaacggcaaacagcaggagtgggaa
gccgtggtgctcatcccgtttatcgatgagaatcgattgttagctgcgatggagccatac
acgcataaaatgaccccgtcggagaaggccaggaacaggcatactgagtgttctgtctac
tgctttgataaagagcaggactatgcctacaactcccccttaccccaaatcctccccagc
atcgtccactgccatgccaggcaaacggcaatcccgattgatgcatggcgtgtgccactg
gaccatgtagggcgcaggattgacagaggagcgctttacttctgcggcttccccacctta
cagcacattcagcataaattttataagaagaaaagtggagtgatggtgtttcaacaaagc
agcagaggagagaacatgatactggaggttttagacagccaggagttggagcaggtagat
gacgttgcagcactggttcttggaaagtgtgtttttgtgaactggccccatctaatggaa
gctcgagtagtagctgtttcagatggagaaataaagtattctttagaggaaccctcagga
tcacagacactgtatctggggaacactcctccacctgctaaagtgaccaatctgactgat
aaagagcagaaggagtgggttaaagaagtgcaaggcctcacagagcacttcggcaagcgt
aaaggcattgtgatcagtgagacggatgtggtggtatacgcccagctgctgacaggcagg
aagtatgtcattggtcacagtggaaaggtccatttggagaagcagttttccaaacaggtc
ctgccctttccataccagaccattgtgaaggatatcaaaacctttgactcctcattgaca
cgcttcaagacattggaggagctgttttctccaggaaccgttgtatttatggttggaaac
ccatattatggcacaatgggagatgtgcaagactctagtgatgtcatcagtgagggacga
gtcagagtggtcttctccgtaccgtgtgaacctcaacttgatgccttaatacagaaccag
cacaaatactcggtgaagtacagtcctgggtatgtgcttgcctcccgcctgggaatcatt
agctacctcgtctcaagattctccggtagcatcttcattggaagaggatccaagaaaaat
cctcatggagagcaaaaagcgaatgtgggccttaatctcaagttcaacaagaagaatgag
gaagttcctggatacaccaagagaacagagaaggagtggctctactcggctgctgtagag
gaactgttagctgaatacttagaaagattttcagaagtgtttgactttgtagcgagaaac
agtcacgatgacgtgttttttgaagatgacatttggccaggagaggatgagaatgggtct
gaaaaggtccaggagatccagacatggcttaaaactcatcctgtcagctcttcctccaga
gcgtcatgtgaccttcagatcctggacgctggcattgtggagaagattgaggaagagcta
gagaagaccaaggcaaagaagatgaacaagaaagtgcgggtcactgtgaagcctcacctg
ctcttcaggccgttggagcagcagcatggtgtagttcctgatcctgaggcagaatatcac
ctgtttgaccgtgtcatcaacgtcagagagagcttctctgttccactcggccttcgagga
actgtcattggtatcaaaggagctgaacgagaggctgaagttctgtatgaggtgctgttt
gatgaggagtttgctggaggactcactatcaggtgctctcctgggcgtggctatcgattg
ccccccagtgccttaatcaacctgagtcatggcagcaggaaggagcagggttcacacaaa
ctcacagccattgtcaaaccacagccctcttcttctcatttcgctcacaagggccagctg
ggtggccttaaccactcgccatgctccgcgtttatacctacacagcatcagaatggcaga
caaagttttaatctcagggctgatgctcagagcaacagacacttgcctcacaaagccctc
aaccagaaaaaccaacataaggactctggtactgagagggagttcagtaatgtatggcag
tctctgcagagttcaggaatgcctcagaaaccacctgctcactggcaaaacaatgctggg
aaaagcagtggatcagtgccacaacagcagcaattggagggacaaaataaacagatccaa
ggcaacgactctaacaaacctgctgcaagtggcaatattagactgctaaagagaaatgaa
gatttgaatgctgctctcctacaggggccttcaaataaggtatccacagaatttgaagag
cttatagccaatctgaaaatctcaaaggagtctgagcccatcctgcctcattcacctaaa
gagcccaagagccaatcaggagaacctctctctccgcagtcctttgccatgaagggaact
ctggttttgaaagaaatgttgaaaattgacagttctgcaacaagttcctctgctcctgac
tccacttcactttctggaggccagagttcagaaccccccaacgcccaacaacagagcaag
agacgctccagcaaaaagctagctgctcggatgaacacacctcagactgaggccccagca
cctcctctggcaggccagcctcccatcctgcccagcattgctgttgagcttggccgggtg
tgcatgggtctagggatgggacctccggaatttgccttcctccgcaacagacagagtcta
acagtgtgtcaggtgaagttgtccaatggtcttcaggtgcacggtcctcaatgtcagtct
gaatctgaatccaaagagaaagctgcactctttgcccttcaacgcttgaactcattgggt
tcattcccattgcctcctcccatattccctggagttcagcagatgaggcctctcgctcct
catccctctatgtttagtcagccaccaggtggtcttttgatgcccccacaaggctatgga
cctcttcactggggtatgcaacttcccaaccaagggcagccattctatggaggaacattc
cccggagcacgaccccctgcatccactgcagccggcggatcccacaaccagtttgttccc
ctccaggtgaccaagaagcgagtttcaggccgatcaaaacaggtgtcgaccagcgctgcc
aatgctggtcagatccagagcagtggaccttcccaaccagctgcttctgtctcagtgccc
ctatcagctcccaagacccccccacccacccgaaactatgagccttcagagaagcccaca
ccgactacacctaagacgcccaggcaaaacgccaaccctcacacgcccggatcggcctcc
aagcggaaacaaaggaaactcgcagtcaactttgaggctgcaaaagtgactgactga
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integrated database retrieval system
