Massilia violaceinigra: CR152_03765
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Entry
CR152_03765 CDS
T05157
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mass
Massilia violaceinigra
Pathway
mass03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mass00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CR152_03765 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mass03021
]
CR152_03765 (rpoB)
03400 DNA repair and recombination proteins [BR:
mass03400
]
CR152_03765 (rpoB)
Enzymes [BR:
mass01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CR152_03765 (rpoB)
Transcription machinery [BR:
mass03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CR152_03765 (rpoB)
DNA repair and recombination proteins [BR:
mass03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CR152_03765 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
ATQ73725
UniProt:
A0A2D2DFH6
LinkDB
All DBs
Position
799839..803945
Genome browser
AA seq
1368 aa
AA seq
DB search
MHYSFTEKKRIRKSFAKRANVHNVPFLLATQLESYENFLQADTIPSTRKNDGLQSAFTSI
FPIVSHNGFARLEFLSYVLGDPAFDVKECQQRGLTFASPLRAKVRLVILDKESPTKPVVK
EMKEQEVYMGELPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTILLKAIGMSHEQILANFFVFDNFNLRSE
GAEMEFVAERLRGEVARFDIVDKSGKTLVLKDKRINAKHVRDIEAAGIKHISVPEDYLLG
RVLAKNIVDSDTGEVIASANDELTEDVLGRLRDASVSEIQTLYTNDLDQGGYISQTLRID
DTADQMAAKVAIYRMMRPGEPPTEDSVEALFNGLFYSPERYDLSAVGRMKFNRRIGRDEL
TGMMTLSNDDVLAVIKILVELRNGRGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAEADNLMPHDLINSKPISAAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEYGFLETPYRKV
ENSMVTDKIDYLSAIEEGRYIIAQANATISKEGTLSDELVSAREAGETILVSPERIQYMD
VAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKAFVGTGIERTVAVDSGT
TVQALRGGVVDYIDAGRVVIRVNDDEALAGEVGVDIYNLIKYTRSNQNTNINQRPIVQVG
DRVAKRDVIADGASTDLGELALGQNMLVAFMPWNGLNFEDSILISENVVKDDRYTSIHIE
ELSVVARDTKLGAEEITRDISNLAENQLARLDESGIVYIGAEVQAGDTLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMVGTVIDVQVFTREGIVRDKRAQQIIDDELK
RFRLDLNDQMRIVEGDAFQRLEKMLINKVVNGGPKKLAKGAKITKEYLDDLDKYHWFDIR
PADDDAATALEAIKESIAEKRHQFDLAFEEKRKKLTQGDELQPGVQKMVKVYLAVKRRLQ
SGDKMAGRHGNKGVVSRIVPVEDMPYMADGTPADIVLNPLGVPSRMNVGQILETHLGWAA
KGLGLRIGEMLKAQAKVQEMRKFLNLIYNETGKTEDLDNFSDDEIMTLAQNLKNGVPFAT
PVFDGAHESEIHRMLDLAYPDHIATKLGMTPSKNQVTMYDGRTGESFERKVTVGYMHVLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVNGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLERN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcactactcatttactgagaagaaacgcattcgcaagtcattcgcgaagcgcgccaac
gttcacaacgttcccttccttctggctacacagctcgaatcctacgagaatttcttgcaa
gcggataccatcccatcgacccgcaagaacgacggcctgcagtcggctttcacctcgatt
ttccctatcgtgtcgcacaatggttttgcgcgtctcgaattcctgtcgtatgtcctgggt
gacccggccttcgacgtcaaggaatgccaacagcgtggcctgacgttcgcgtcgccgctg
cgcgccaaggtgcgtctggtgattctggataaagaatcgccgaccaagcctgtggttaag
gaaatgaaagagcaagaagtttacatgggcgaattgccgctcatgacgaccaccggctcg
ttcgtcatcaacggtaccgagcgcgtgatcgtctcgcagctgcaccgttcgcctggcgtg
ttcttcgaacacgaccgcggcaagacccactcgtcgggcaagctgttgttctcggcacgg
atcattccttaccgcggctcgtggctggacttcgagttcgatccgaaggacatcctgttc
ttccgcgtcgaccgccgccgcaagatgcctgtgacgatcctgctgaaggctatcgggatg
tcgcacgaacagatcctggcgaacttcttcgtattcgataatttcaatctgcgctcagaa
ggcgccgagatggaattcgtcgccgaacgcctgcgtggcgaagtcgcgcgtttcgacatc
gtggacaaatccggcaagaccctggtgctgaaagacaagcgtatcaacgccaagcacgtg
cgcgatatcgaagcggccggcatcaagcacatttccgtgcctgaagactacctgctcggc
cgtgtgctggccaagaacatcgtcgactcggacaccggcgaagtcatcgcgtcggccaat
gacgagctgaccgaagacgtcctgggccgcctgcgcgacgcttccgtgagcgaaatccag
accctgtacacgaacgacctcgaccagggtggctacatctcgcaaaccctgcgtatcgac
gacaccgccgaccagatggccgcgaaagtggcgatctaccgcatgatgcgtccaggcgag
ccgccaaccgaagattcggtcgaagcgctgttcaacggcctgttctacagccctgagcgc
tacgacctgtcggccgtcggccgcatgaagttcaaccgccgcatcggccgcgatgaactg
accggcatgatgaccctgtcgaacgacgacgtcctggctgtgatcaagatcctggtggaa
ctgcgcaatggccgcggcgaagtcgacgatatcgatcacctgggtaaccgtcgcgtacgt
tgcgtcggcgaactggcggagaatcaattccgtgccggcctggtgcgcgttgagcgcgcc
gtcaaggaacgcctcggccaggccgaagcggacaacctgatgccgcacgacttgatcaac
tcgaagccgatttcggccgcgattcgcgagttcttcggttcgtcgcagctgtcgcagttt
atggaccagaccaacccgctgtcggaaatcacccacaagcgccgcgtttccgcgctcgga
cctggtggtctgacccgcgaacgtgccggcttcgaagtgcgcgacgtgcacccgacccac
tacggccgcgtgtgcccgatcgaaacgccagagggcccgaacattggtctgatcaactcg
ctggctctgtttgcccgcctgaacgaatacggcttcctcgagacgccgtaccgcaaggtc
gaaaacagcatggtcaccgacaagatcgactatctgtccgcgatcgaagaaggccgctac
atcatcgcccaggcgaatgcgaccatctcgaaagagggtaccttgtcggatgaactggtt
tccgcacgtgaagccggcgaaacgatcctggtctcgccggagcgcatccagtacatggac
gtggcgcctggccagatcgtctcggtcgcagcttccctgattccgttcctcgaacacgat
gatgcgaaccgcgcattgatgggtgccaacatgcagcgccaggccgttccttgcctgcgc
cctgaaaaagccttcgtcggtactggtatcgaacgcaccgtggcagtcgactccggcacc
accgtgcaagcgctgcgtggcggcgtggttgactacatcgatgcaggccgtgtcgtgatt
cgcgtcaacgacgacgaagcactggcgggcgaagtcggcgtggacatctacaacctgatc
aagtacacccgttccaaccagaacaccaacatcaaccagcgtccgatcgtgcaggttggc
gaccgtgtcgccaagcgcgacgtgatcgccgatggcgcgtcgaccgatctgggcgaactg
gctctgggtcagaacatgctcgtggcatttatgccatggaacggtctgaacttcgaggat
tcgatcctgatctcggaaaacgtcgtcaaagacgaccgctacacctcgattcacatcgaa
gagttgtcggtggttgcacgcgataccaagctgggcgccgaagaaattacgcgcgacatc
tcgaacctggctgaaaaccagctggctcgtctggatgagtccggcatcgtctacatcggt
gctgaagtgcaagcaggcgacaccctggtcggtaaagtgacgccaaaaggcgaaacccag
ctgaccccggaagagaagctgctgcgcgcgattttcggcgagaaagcatcggacgtcaaa
gacacctcgctgcgcgtgccttcgggcatggtcggcaccgtgatcgacgtgcaagtgttt
acccgtgaaggcatcgtccgcgacaagcgcgcccagcagatcatcgatgatgaactcaag
cgtttccgcctcgacctgaacgaccagatgcgtattgtggaaggcgatgccttccagcgt
ctggaaaaaatgctgatcaacaaagttgtcaacggtggccctaaaaagctggccaagggc
gcgaagatcaccaaagagtacctcgacgacctcgacaagtaccactggttcgatatccgt
ccagctgacgacgatgccgccaccgccctcgaagcgatcaaggaatcgatcgccgagaag
cgtcaccagttcgacctggccttcgaagagaagcgcaagaagttgacccagggcgatgag
ctgcaacctggcgtgcagaagatggtcaaagtctacctggccgtcaagcgccgcctgcag
tcgggcgacaagatggccggccgtcacggtaacaagggtgtggtttcccgtatcgtgcca
gtcgaagacatgccgtacatggcggacggtaccccggccgacatcgtgctgaacccgctg
ggcgttccgtcgcggatgaacgtcggtcagattctcgaaacccacttgggttgggcagcc
aagggcctgggcctgcgcatcggcgaaatgctgaaagcgcaagccaaggtccaggaaatg
cgcaagttcctgaacctgatctacaacgaaaccggcaagacggaagacctggacaacttc
agcgacgacgagatcatgaccctggcgcaaaacctgaagaacggcgtgcctttcgcgacg
ccagtgttcgacggtgcgcacgagtcggaaatccatcgcatgctggacctggcgtatcct
gaccatatcgcgaccaaactcggcatgacaccgtcgaagaaccaggtcacgatgtacgac
ggccgcaccggcgaatcgttcgagcgcaaggtaactgttggctacatgcacgtactgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggtccttactcgctggta
acgcagcagccactgggcggtaaagcccagttcggtggccagcgtttcggtgagatggaa
gtctgggcactggaagcgtacggcgcatcgtatgtgctgcaagaaatgctgaccgtcaag
tcggatgacgtgaacggccgtaccaaagtgtacgaaaacctggtcaaaggcgaccatgtg
atcgacgcgggtatgccggaatcgttcaacgtgctggtgaaagagattcgttcgctgggt
atcgatattgacctcgagcgtaattaa
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