Massilia sp. YMA4: DPH57_23960
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Entry
DPH57_23960 CDS
T05528
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DPH57_23960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
masy03019
]
DPH57_23960
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_23960
Enzymes [BR:
masy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DPH57_23960
Messenger RNA biogenesis [BR:
masy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DPH57_23960
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DPH57_23960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
PolC_DP2_N
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AXA93927
LinkDB
All DBs
Position
5556967..5562111
Genome browser
AA seq
1714 aa
AA seq
DB search
MSSATLNLHAWPADGPEPIAACVVSIDLEVGRDSGRIHRFAGVHGKHRRDVAFPPGTLPE
ALRALDGLADEASYVLGHNLIAFDLPQLRAAQPTLRLLAKDAIDTLRLNPLAFPRNPYHH
LVKHYHDGSLLGNCRNDPLLDAGLALQVFADQVDSLTKMAGESPDLLLAWHWLTTERRGV
GGLDHFFTEVRGAPRPDAPDAEAALRRLLADTGCAQAGADLVARARDHAWPLAYALAWIS
VAGGDSVMPPWVRYQFPATGRLIRRLRDTPCGSPACRWCEREHDSLHQLRHWFGPGYTFR
PEPVYGPSGRPLQQEIVEAAMRGEHALGILPTGTGKSLCYQVPALSRFVRTGALSIVISP
LVALMEDQVNGLRARGIHGCAAINGLLSMPERADVLDRVRLGDVSILLIAPEQLRNKSVR
KVLAQREVGAWIFDEAHCLSKWGQDFRPDYRYVARFIRESAEASPGKEMPLIQCLTATAK
PEVVADIVGHFRDKLGIELRLFDGGAKRDNLDFEVLETTEDTKFAHVAALIERELPAHTR
DGAIVYCATRKQVGALADFLRDKGMAAAPYHAKLPPELKKDTQQAFIKGELRVIAATNAF
GMGIDKQDVRLVVHADIPGSLENYLQEAGRAGRDRAQARSVLLYCADDVERQHGMSAASR
LSRRDIQGVLRALRQLQRKKDRDQALVATPAEILEEDDEGKFKRDGNTDDTRVRTAVAWL
EEAGLVRREENAVQIFPSSLRVKNRDEAERLLGDLEPAYRQRCMRLVELLLAAGADEGLS
TDELMAAGGFSADLLRETLFLFDRLGIASNDMAMTAFVHVAVENSSKKRLREAGVLEAAV
IAALKEEAPDFGVGDSAPLHLRLLTQRLKDQGHAVLPQRVRQVIAGLAGDGRDGGDGKGS
LTLKRGADPETLHVLLNRPWPRLEQIAQRRRDAAERLLDHWLSTLPQGARGVDQLAETTV
GQLTASVAGDALLAAATTDLRKLVDRALLWLHEQDVLRLNKGLTIFRSAMTLHLESNWKL
QFEKSNYLPLAQHYEELTRQIHIMAEYAERGLRQMADAIQLALDYFQYEREEFCRRWLPG
REPELARQTTPQSWKDIVETLAAPHQRNIVADDRESVNVLVLAGPGAGKTRVLVHRIAYL
IRMRRENPQAVLALAYNRHAALEIRKRLAALIGDDARGVTVLTCHALAMRLVGTSFVHRG
GEEGDFDAVLAEATALLEGRGLPPEDADAQRDRLLAGFRWILVDEYQDIGPGQYALIAAL
AGRKRSDEDGRLNLFAVGDDDQNIYAFAGASIEYIRRYTEDYKARQEQLVENYRSTRHIV
AAANLVIGRAGDRMKQQAIRVDTRRANAPAGGAWQQVDPVTQGRAQVLPAGKDAQEQALA
IYTELKRMLALGLDPARTALIARQWKYLDPVRAALEAAGIPVSMADEEAPSLWRLRETQA
FLAHLDAHCAANGKRLLKTGDLRAWLAQRDDSPWWPVLREAVDAFAADTQEAEVSLARFQ
EWLAEWGRASRQQQGGVLLLTAHRAKGLEFDHVFVLDSDWRGGQGEDPDASRRLYYVAMT
RARSTLTLARMDPGNPMIDALGEHACLVRRARTSWLPAPGPLARRFCLPGQRDLKLSFAG
WKDANSPVHRAIAALRVGDPLDYVDDEQGARLEAGGVIVGRFAKSFQPPAGMRCVLARVR
AVLVWRKCDNAPEFQVRCQRDCWEIVMPELVFER
NT seq
5145 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccgcaacgctcaacctgcatgcctggccagccgacggccccgaaccgatcgcg
gcctgcgtcgtttcgatcgacctcgaggtcggccgcgacagcgggcgcattcaccggttt
gctggcgtccacggcaagcatcgccgtgacgtcgccttcccgcccgggacgctgcccgag
gcgttgcgcgccctcgacggtctcgccgacgaggccagctacgtgcttgggcacaacctg
atcgccttcgacctgccgcaattgcgtgccgcccagcccaccctgcggctgctggccaag
gatgcgatcgataccttgcgcctgaatccgctggcgttcccgcgcaacccctaccaccac
ctggtcaagcattaccacgacggcagcttgctggggaactgccgtaacgaccccctgctc
gatgcgggcctggcgctgcaggtgttcgccgaccaggtcgacagcctgacgaagatggcc
ggcgagtcgccggaccttctgctggcatggcattggctgacgacggagcggcgcggcgtg
ggcggcctggatcacttctttaccgaggtacgcggcgcgccaaggccggacgcgccggac
gccgaggcggccctgcggcgcctgctggccgataccggctgcgcccaagcgggcgccgac
ctggtcgcgcgcgcgcgtgaccatgcctggccgctggcctatgcgctggcgtggatctcc
gtggcgggcggcgattcggtcatgccgccgtgggtacggtaccagttccctgcaacggga
aggctgatccggcggctgcgcgacacgccgtgcggttcgccggcttgccgttggtgcgag
cgcgaacatgactcgctgcatcagctgcggcactggttcggcccaggatacacgttccgg
ccggagccggtgtacggccccagcggccgtccgctgcagcaggagatcgtcgaggcggcg
atgcgcggcgagcatgcgctgggcatcctgccgaccggcaccggcaagtcgctgtgctac
caggtgcccgcgctgtcgcgcttcgtgcgcaccggggccctgtccatcgtgatctcgccg
ctggtggcgctgatggaagaccaggtcaatggactgcgcgcgcgcggcatccacggctgc
gcggccatcaacggcctgctgtccatgcccgagcgcgcggatgtgctcgaccgggtacgc
ctgggcgacgtcagcatcctgctgatcgccccggagcagctgcgcaacaagagcgtgcgc
aaggtgctggcgcagcgcgaggtcggtgcctggatcttcgacgaagcgcactgcctgtcg
aaatggggccaggatttccggcccgattaccgctacgtggcgcgcttcatccgcgaaagc
gccgaggccagccccggcaaggagatgccgctgatccagtgcctgaccgccacggccaag
cccgaagtggtggccgacatcgtcggccatttccgcgacaagctggggatcgaactgcgc
ttgttcgacggcggcgccaagcgggacaacctcgactttgaagtgctggaaaccaccgag
gacaccaagtttgcccatgtggccgcgctgatcgaacgggaactgccggcgcataccagg
gatggcgccatcgtctattgcgccacccgcaagcaggtcggcgcgttggcggattttttg
cgcgacaagggtatggccgccgcgccctaccacgccaagctgccgccggaactgaagaag
gacacgcaacaggccttcatcaagggcgagttgcgcgtgatcgcagccaccaatgccttc
ggcatgggcatcgacaagcaggatgtgcggctggtcgtgcacgcggacattcccggctcg
ctggaaaactacctgcaggaggcggggcgggccggacgcgatcgcgcgcaggcgcgcagc
gtgctgctgtactgcgccgacgacgtggagcgccagcacggcatgtcggccgcgtcgcgc
ctgtcgcggcgcgatatccagggcgtgctgcgcgcgctgcgccagctgcaacgcaagaag
gaccgcgaccaggcgctggtggccacgcctgccgagatcctggaggaggatgacgagggc
aagttcaagcgcgacggcaataccgacgacacgagagtccggaccgccgtcgcctggctg
gaggaagccgggctggtacggcgcgaggaaaacgcggtgcagatctttccgtcgtcgctg
cgcgtgaagaaccgcgacgaggcggagcggctgctgggcgatctcgagccggcttaccgg
cagcgctgcatgcggctggtggagctgctgctggcggcgggcgccgacgagggcctgtcc
accgacgaactgatggccgccggcggcttcagtgccgacctgctgcgcgagaccctgttc
ctgttcgaccgcctgggtatcgccagcaacgacatggcgatgacggccttcgtccacgtg
gcggtggaaaactcgtcgaaaaagcgcctgcgcgaagccggcgtcctggaagcggccgtg
atcgccgcgctgaaggaggaggcaccggatttcggcgtcggcgacagcgcgccgctgcac
ctgcggctgctgacgcaacgcctgaaggaccagggccacgcggtgctgccgcagcgcgtg
cgccaggtcattgccgggctggcgggcgacggacgcgacggcggcgacggcaagggcagc
ctgaccctgaagcgcggcgccgacccggaaacgctgcacgtgctcctcaaccggccctgg
ccccggctggagcagatcgcgcagcggcgccgcgacgccgccgaacggctgctcgatcac
tggctgtccacgctgccgcagggcgcccgcggcgtcgaccagctggcggaaaccacggtg
ggccagctcaccgccagcgtggccggcgacgcgctgctggccgccgcgacgaccgacctg
cgcaagctggtcgaccgcgccttgctgtggctgcacgaacaggacgtgctgcggctgaac
aaggggctgacgatcttccgttcggccatgaccttgcacctggaaagcaactggaaactg
caattcgagaagagcaactacctgccgctggcgcagcattacgaggaactgacccggcag
atccacatcatggccgagtacgccgagcggggcttgcgccagatggcggacgcgatccag
ctggcgctggactatttccagtacgagcgcgaggagttctgccggcgctggctgccgggc
agggaacccgaactggcgcgccagaccacgccgcagtcctggaaggacatcgtcgagacg
ctggccgcgccgcaccagcgcaatatcgtggcggacgatcgcgagagcgtcaacgtactg
gtgctggccggcccgggcgcgggcaagacgcgcgtgctggtccatcgcatcgcctacctg
atccgcatgcggcgcgagaatccgcaagcagtgctggcgctggcctataaccgccacgcg
gccctggagatccgcaagcgcctggccgcactgatcggcgacgacgcgcgaggcgtcacc
gtgctgacctgccacgccctggccatgcgattggtgggcaccagcttcgtccatcgcggc
ggcgaggaaggcgacttcgatgccgtgctggccgaggcgaccgcgctgctggaagggcgc
ggcctgccgccggaagacgccgacgcgcagcgcgaccggctgctggccggcttccgctgg
atcctggtggacgagtaccaggacatcggccccggtcaatatgcgctgatcgccgcgctg
gccggccgcaagcgcagcgacgaggacgggcgcctgaacctgttcgccgttggcgacgac
gaccagaacatctatgcgttcgccggcgcgtcgatcgagtacatccgccgctatacagaa
gactacaaggcgcgccaggagcagctggtcgagaactatcgcagcacgcggcacatcgtc
gcggcggccaacctggtgattggccgtgccggggatcgcatgaaacagcaggcgatccgt
gtcgatacccggcgcgccaacgcgccagccggcggcgcctggcagcaggtcgatccggtg
acccagggccgggcgcaggtgctgccggccgggaaggacgcgcaggagcaggccctggcc
atctacacggagctcaagcgcatgctggcgctcggcctcgatccggcccgcacggcgctg
atcgcgcgccaatggaagtacctcgacccggtgcgcgcggccctggaagcggccggcatc
ccggtcagcatggccgacgaggaggcgccgtcgctgtggcgcctgcgtgaaacccaggcg
ttcctggctcatctcgacgcgcactgcgcggccaacggcaagcgcttgctcaagacgggc
gacttgcgggcctggctggcccagcgcgacgactcgccctggtggcccgtgctgcgcgag
gcggtcgacgcatttgcggccgacacccaggaagcggaagtgtcgctggcccgcttccag
gagtggctggccgaatggggccgggccagccgccagcagcagggcggcgtgctgctgctg
acggcgcatcgcgccaagggcctggagttcgaccatgtgttcgtgctcgatagcgactgg
cgcggcgggcagggcgaggaccccgacgcgtcccggcgcctgtattacgtcgccatgacg
cgcgccaggtcgacgctgacgctggcccgcatggacccgggcaacccgatgatcgacgcg
ctgggcgagcatgcctgcctggtgcgccgggcacgcacctcgtggctgcccgcccccggc
ccgctggcccgccgcttctgcctgccgggccagcgcgacctgaagctgagctttgcgggc
tggaaggacgccaacagtccggtgcaccgcgccatcgccgccttgcgcgtgggcgacccg
ctcgattacgtcgacgacgaacagggggccaggctggaggcgggcggcgtgatcgtcggg
cggtttgcgaagagcttccagccaccggccggcatgcgctgcgtgctcgcgcgggtgcgc
gcggtgctggtctggcgcaagtgcgacaacgcgccggaattccaggtgcgctgccaacgg
gactgttgggaaatcgtcatgcccgagctggtgttcgagcgttga
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