Mycolicibacterium aubagnense: MAUB_42280
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Entry
MAUB_42280 CDS
T07121
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
maub
Mycolicibacterium aubagnense
Pathway
maub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
maub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MAUB_42280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
maub03400
]
MAUB_42280 (mfd)
Enzymes [BR:
maub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MAUB_42280 (mfd)
DNA repair and recombination proteins [BR:
maub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MAUB_42280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
MFD_D3
DUF1474
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBX86355
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All DBs
Position
4371646..4375299
Genome browser
AA seq
1217 aa
AA seq
DB search
MTSPGQQSIQTPLAGLVQLALTDPGLQELTRQAGEGVAERALVGPVSARLPVAAALAAAG
PVLVVTATGREADDLTAELRAVYGDAVALFPSWETLPHERLSPGVDTVGARLTVLRRLAL
PDDARLGPPLRVVVTTARSLLQPLAGGVTDAEPVTLTIGGEADFDDTVTRLVELAYTRVD
MVGKRGEFAVRGGILDVFTPTAEHPVRVEFWGDEVSEMRMFSVADQRSIPEIAVETMIAV
PCRELLLTADVRARAAEIGAGLPSNDNQVTGSVADMMAKLAEGIPVDGMEALLPVLRPGE
LALLTDRLPAGAPLLICDPEKVRTRAADLIKTGREFLEASWSVAAVGGDAPIDVEQLGGS
GFRDFVEIREAAAAGGHPWWTLSQLANETALEVDIRPAPSARSQQSLEEIFAMLRAHIAT
GGLAAVVTPGTGTAHRVVEQLGESDVAATMLAPGEAPKPGVVGVLKGPLHDGLVLPGVNL
VIITETDLTGNRAAVTEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGKFVEMTERVVGG
ARREYLVLEYASAKRGGGADRLYVPMDSLDQLSRYVGGQEPTLSRLGGSDWTNTKTKARK
AVREIAGELVSLYAKRQSAPGHAFAPDTPWQNEMEDAFGFTETMDQLTAITEVKADMEKP
VPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFAARMAGFPVT
VKGLSRFTDPAESRLVIEGLKDGSVDVVIGTHRLLATGVTWKDLGLVIVDEEQRFGVEHK
EHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERFPVLTYVGPHDDKQVA
AALRRELLRDGQAFYIHNRVKSIDSAAARVRQLVPEARVVVAHGQMPEELLEKTVEGFWN
RDYDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPE
VPLTETAHDRLATIAQNNDLGAGMAVAMKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRLV
GEAVEAYRAAVDGKTIAAVEEPKEVRVDLPIDAHLPPDYIGSDRLRLEAYRRLAAASDHA
AVASVVEELVDRYGPLPEPAQRLVAVARLRLLCREYGVTEVTAISDSTIRLTPLTLMDSG
QLRLKRMYPGATYRATTSTVQIPIPRAGAGVGAPRIRDLELARAVAGLLLVLDGKAAGEV
DITDLGGSAVGEPGQSR
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacctccccggggcagcaatcgatccaaaccccgttggcggggctcgtccaactcgca
ctcaccgatcctggcctgcaggaactgacgcggcaggccggcgagggtgtcgccgagcgg
gctttggtcggcccggtcagcgcccggctaccggtcgcggccgcgctggctgcagcgggc
ccggtgctggtggtcacagccaccggccgcgaggccgacgatctcaccgccgaactgcgg
gccgtctacggcgacgctgtcgccttgttcccgtcgtgggagacgctgccgcacgagcgg
ctgtcgcccggcgtcgacaccgtcggtgctcggttgaccgtgctgcgccggctggcgctg
cccgatgacgcccggctcggtccgccgctgcgggttgtcgtcaccacggcccggtcgctg
ctgcagccactggccggcggcgtgaccgacgccgaaccggtgactctgaccatcggcggt
gaagccgacttcgatgacaccgtgacgcgactggtcgagctggcctacacgcgcgtcgac
atggtcggcaagcgcggcgaattcgccgttcgcggcggcattctcgacgtcttcacgccg
actgccgagcaccccgtgcgggtcgagttctggggcgacgaggtctccgagatgcggatg
ttctcggttgccgaccagcggtccatcccggagatcgccgtcgagacgatgatcgcggtg
ccctgccgcgaactgctgctgaccgccgacgtccgcgcacgcgccgccgagatcggggcc
ggcctgcccagcaacgacaaccaggtcaccggcagcgtcgccgacatgatggcgaagctg
gccgagggcatcccggtcgacggtatggaagcgctgctgccggtgctgcgtccgggcgaa
ctggcgttgctcaccgatcggctgcccgcgggtgcgccgctgctgatctgcgatccggag
aaggtccgcacccgcgcggccgacctgatcaagaccggccgcgagttcctggaagcctcg
tggtcggtggccgccgtcggcggcgacgcaccgattgacgttgagcagcttggtggttcg
ggcttccgggacttcgtcgagatccgcgaggccgcggccgccggtggtcacccgtggtgg
acgctgagccagctggccaacgagacggcgctcgaggtggacatccggccggcgccgtcg
gcccgtagccagcagagcctcgaagagatcttcgcgatgttgcgggcgcacatcgctact
ggcggcctcgccgcggtggtgaccccgggcaccggtaccgcgcaccgtgtggtcgagcag
ctgggtgaatccgacgtcgcggcaacgatgttggcgcccggtgaggcgccgaagcccggc
gtcgtcggcgtgctcaaggggccgttgcatgacggtctggtgctgcccggcgtcaacctg
gtgatcatcaccgagaccgatctgacgggcaatcgggccgcggtcaccgagggcaaaagg
cttgccgccaaacggcgtaacgtcgtcgacccgctggccttgacggccggcgacctggtg
gtgcatgaccagcacggcatcggcaagttcgtcgagatgaccgagcgcgtggtcggtggc
gcgcggcgcgagtacctggtgctcgagtacgcgtcggccaagcgcggtggcggggccgac
cggctgtacgtgccgatggactcactggaccagctgtcccgctacgtcggtgggcaggaa
cccacgctgagccgcctcggtggcagcgactggaccaacacgaagaccaaggcgcgcaag
gcggttcgcgagatcgccggcgagctggtgtcgctgtacgccaagcggcagtccgcaccc
ggacatgcgttcgccccggacaccccgtggcagaacgagatggaggacgcgttcggcttc
accgagaccatggaccagctgaccgccatcaccgaggtcaaggccgacatggagaagccg
gttcccatggaccgggtcatctgcggtgacgtcggctacggcaagaccgagatcgcggtc
cgcgcggcgttcaaggccgtgcaggacggcaagcaggtcgcggtgctggtgccgacgacg
ctgctggccgatcagcacctgcagaccttcgccgcccggatggccggcttcccggtgacg
gtcaaggggctgtcccgattcaccgatccggccgaatcccgtttggtgatcgagggtttg
aaggacggatcggtcgacgtcgtgatcggtacccaccggctgctggcgaccggcgtcacc
tggaaagacctcggcctggtgatcgtcgacgaggaacagcggttcggtgtcgagcacaag
gaacacatcaagtcgatgcgcacgcacgtcgacgtgctgaccatgagcgccaccccgatc
ccgcgcacgctggagatgagcctcgcgggcatccgggagatgtcgaccatcctgacgccg
cccgaggaacgcttcccggtgctgacttacgttgggccgcatgacgataagcaggtcgct
gccgccttgcgtcgcgagctgctgcgcgatgggcaggcgttctacatccacaaccgggtg
aagtcgatcgacagcgcggccgcgcgcgtgcgccagttggtgcccgaggcgcgggtcgtg
gtggcccacgggcagatgcccgaggagctgctggagaagaccgtcgagggtttctggaac
cgcgactacgacatcctggtgtgcaccacgatcgtcgagacgggccttgatatttcgaac
gccaacactttgatcgtcgagcgggccgacaccttcggcctgtcgcagctgcaccagctg
cgtggccgcgtcggccgcagccgcgaacggggttacgcgtacttcctgtatccgccggag
gttccgctcaccgagaccgcgcacgacaggctggccaccatcgcgcagaacaatgatctg
ggcgccggtatggcggttgccatgaaggacctggagatccgcggcgccggcaacgtgctg
ggcgtcgagcagtccgggcacgtcgccggcgtcggcttcgacctgtacgtccggttggtc
ggcgaggccgtcgaggcctaccgcgccgccgtggacggcaaaaccattgcggccgtggag
gaaccgaaggaagtgcgggtcgatctgccgatcgatgcccacctgccgccggactacatc
ggcagcgaccggctgcggctcgaggcctaccgcaggctggccgccgcgtccgatcatgcg
gccgtcgcctccgtcgtcgaggagttggtggaccgctacggtccgctgcccgaacccgcg
cagcggctggtcgcggtcgctcgcttgcggctgctgtgccgcgagtacggcgtcaccgag
gtgactgcgatctccgactcgaccatccggctgacgcccctgacgctcatggattccggg
cagctgcggctcaagcggatgtacccgggcgccacgtaccgggcgacgacgtcgacggtg
cagatccccattccgcgggccggtgcgggcgtgggcgcaccacggatccgcgacctggag
ctggcgcgcgcggtggccggactgctgctggtgctcgacgggaaagcggctggtgaagtg
gatataaccgacctgggaggtagcgcagtgggcgaaccgggacagtcacgatga
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