Candidatus Methylopumilus planktonicus: BN1208_0204
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Entry
BN1208_0204 CDS
T03869
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit)
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
mbat
Candidatus Methylopumilus planktonicus
Pathway
mbat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mbat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BN1208_0204 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mbat03021
]
BN1208_0204 (rpoB)
03400 DNA repair and recombination proteins [BR:
mbat03400
]
BN1208_0204 (rpoB)
Enzymes [BR:
mbat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BN1208_0204 (rpoB)
Transcription machinery [BR:
mbat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BN1208_0204 (rpoB)
DNA repair and recombination proteins [BR:
mbat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BN1208_0204 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
CEZ19099
UniProt:
A0A0D6ETM2
LinkDB
All DBs
Position
1:188386..192555
Genome browser
AA seq
1389 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRERVQDIPYLLTMQLESYAAFLQKNTHAEQRLSEGLQSTFNSV
FPITSHSGNARLDFVTYNLGEEAFDVKECQQRGLTYGVPLRVKVRLTLMDKEASKPTVKE
IKEQEVYMGEIPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDYLYFRVDRRRKMPVTILLKALGYSPEQILETYYDFDSFHVTAKS
IDFELVPDRLRGEIAKFDIADKRGNVIVQKDKRITVKHIREMEKAGVNKITVDKDFILGR
KLSKAIVDKNTGEVIASANDEITESVLDKFIEVGVGQIHTLYSNDLDHGDYISQTLTSDE
VPDQYSAKVAIYRMMRPGEPPTEDAVEALFKGLFFNEDRYDLSNVGRMKFNRRAHQKAYE
QHANWLQRFYKRVGPQGETGANILSNDDILAVIGVLIELRNGRGEIDDIDHLGNRRIRSV
GELVENQFRTGLVRVERAVKERLSQAEADNLMPHDLINSKPISSAIREFFGSSQLSQFMD
QTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHSTHYGRVCPIETPEGPNIGLINSLA
LYARTNQYGFLETPYRRVENGKVTAKIDYLSAIEESEFVIAQANTELDNKGHFQDDLISC
RHRNEFTMSSVDPIQYMDVAPGQIVSVAAALIPFLEHDDANRALMGANMQRQAVPCLRAE
KAVVGTGIERTVATDSGTTVQAKRGGIVDYVDSRRVVIRVNDDEAADGEVGVDIYNLTKY
TRSNQNTNINQRPLVRIGNKIARGDVIADGASTDVGELALGQNMLVGFMPWNGYNFEDSI
LISERVVAEDRYTSIHIEELSVVSRDTKLGPEEITRDISNLSERMLGRLDESGIIYIGAE
VESGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTIIDVQVFTR
EGIDRDSRAEQIIDDQLKHFKQDLADQLRIVEDDTFGRIERLLTSKVATGGPKGLKKGEK
ISKDFLASINRYDWFDIRLGNDDASKQLESLKDNLATAKEQFDKRFEEKKRKLTQGDELP
PGVQKMVKVYLAVKRRIQPGDKMAGRHGNKGVVSKIAPVEDMPHMADGTPLDIVLNPLGV
PSRMNIGQILETHLGWAAKGLGLRIGEMLREEVKITEVRKFLDQIYNDASGKKEDIKSLN
DDEVVELAEHLKNGVPFATSVFDGASELDIQYMLDLAYPDSDPKTKLLQFSANKTQVKLF
DGRTGEAFERPVTVGYMHVLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEM
EVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSL
AIDIDLDRN
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagctattcctttactgaaaaaaaacgtattagaaaaagttttgctaaaagagagcgt
gtgcaagatataccatacttgctcaccatgcagcttgagtcttatgcagcttttttacag
aagaatacgcatgccgaacagagacttagcgaaggccttcagtcaacattcaattcagta
tttcctatcacaagtcattccggtaatgcccgacttgattttgtcacttacaatttaggc
gaggaagcgtttgacgttaaagaatgtcaacagcgcggcttaacatatggtgttccattg
agagtcaaagttcgtttaactctcatggataaagaagcatcaaaaccaacagtgaaagaa
attaaagagcaagaagtgtacatgggtgaaattccacttatgacagacaatggttcattt
gttattaatggcactgagagagttatcgtatctcaacttcatagaagccctggtgtattt
tttgagcatgatcgaggcaaaacgcacagctctggaaagttattattttcagcaagaatc
attccttatcgtggctcttggttagatttcgaatttgatcctaaggattatttatatttc
cgtgtggatcgtcgcagaaaaatgccagtcacaattttattaaaagctttaggttattca
ccagaacaaattctagaaacatactacgattttgattcattccatgtgactgctaaatca
attgattttgaattggtccctgatcgtctaagaggcgagattgctaagtttgatattgct
gataaaagaggaaatgtgattgtacaaaaagacaagcgcattactgtcaagcatattcgt
gagatggaaaaagcaggcgtaaataaaattacagtggataaagattttattttgggccgc
aagctttcaaaagcaattgtagataaaaatacaggcgaagtcattgctagtgcaaatgat
gaaatcacagagtcagtattggataaatttattgaagtaggtgtagggcaaattcataca
ctttattcaaatgatttagatcatggcgactatatttctcaaacacttacctcagatgag
gtccctgatcaatacagcgcaaaagttgctatttatcgaatgatgagacctggcgagcca
ccgactgaagatgcagttgaagctttgttcaaaggattattttttaatgaagaccgatat
gatttatctaatgtaggtcgcatgaaatttaatcgaagagcgcatcaaaaagcatacgaa
caacatgcaaactggttacaaagattttataagcgcgttggcccacaaggcgaaactggt
gcaaatattttatcgaacgatgatatcttggctgtgattggtgttcttattgaattacga
aatggtcgaggtgaaatagatgatattgaccatcttggtaatcgaagaattcgctctgtt
ggtgagcttgtagagaatcaatttagaactggacttgttcgagtggagcgagcagttaaa
gaaagattaagccaagctgaggcagacaatttgatgccacatgacttaattaattcaaaa
cctatctcaagtgcgattagagaattctttggttcatcacaattatctcaatttatggat
caaactaatccattgtctgaaattacgcataagcgaagagtttcagccttaggccctgga
ggtttaacaagagagcgtgctggcttcgaggtccgtgacgttcattcgacacattatggc
cgtgtatgcccaatcgaaaccccagaaggaccaaacattggattgattaattcactcgca
ctttatgcaagaacgaatcaatacggcttcttagagacaccttatagacgtgttgaaaat
ggaaaagttactgcaaagatagactatctttctgcgattgaagaaagtgaatttgttata
gcccaggcaaatactgagcttgataataaaggacattttcaagacgatttaatttcatgt
cgccatcgcaacgaatttacgatgtcttctgtagatcctattcaatatatggacgtagcg
cctggccagattgtttctgtggcagctgcattaattccatttttagaacacgacgatgca
aaccgtgcgcttatgggcgcaaacatgcaacgtcaagcagtgccatgcttgagagcagaa
aaagcagttgtaggtacaggtattgaaagaacagtagcaactgattctggcacaacagtt
caagctaagcgtggtggaattgttgattatgtagattcaagacgtgttgtgattcgcgtg
aacgacgatgaagctgctgatggagaagttggcgttgatatttataatctaactaaatac
acaagatcaaatcaaaataccaatattaatcaaaggccacttgtaagaattggcaacaaa
attgcaagaggtgatgtgattgctgacggcgcatcaacagacgttggtgaattagcgctt
ggacaaaatatgcttgttggatttatgccttggaatggttataacttcgaggattcgatt
ttaatttcagagcgcgtagtggctgaagatcgatatacatcaattcatatcgaagaatta
tctgttgtatctagagatacaaaattaggcccagaagaaattacgcgcgacatttcaaat
ctttcagaaagaatgcttggaaggcttgatgagtcaggcattatttatattggtgccgaa
gttgaatcaggcgatgtacttgtaggaaaagttacaccaaaaggcgagacacagcttaca
cctgaagaaaaactcttaagagcaatttttggtgaaaaagcttctgatgtaaaagataca
agtttgagagtgccatcaggcatgtctggaacaattattgatgttcaagtatttacgaga
gagggcattgatagagattcaagagccgaacaaattattgatgatcaattaaagcacttc
aaacaagatctagctgatcaattaagaattgttgaagatgatacttttggaagaatcgaa
agattacttacaagtaaagtcgcaactggcggtccaaaaggcttgaaaaaaggcgaaaaa
atatctaaagattttctagcttcaattaatagatacgactggtttgatattcgcttaggt
aatgatgacgcttcaaaacaattagaaagtttgaaagataatttagcaactgctaaagaa
caattcgacaaacgttttgaagagaaaaaaagaaaattaacacaaggcgatgagctccct
ccgggcgttcaaaaaatggttaaggtttacttggcagtgaaacgtagaattcagcctggc
gataaaatggctggacgtcacggtaacaaaggcgttgtttctaaaattgctcctgtagaa
gacatgccgcatatggctgatggtacacctttggatattgtattaaatccattaggcgtt
ccttctcgaatgaatatcggccaaattttagaaacccatcttggatgggcagctaaaggc
ctaggtcttcgtatcggagaaatgctcagagaagaagtaaaaattactgaagttcgtaaa
tttttagatcaaatttataacgacgcttcaggtaaaaaagaagacattaagtcattaaac
gatgatgaagttgtagagcttgctgagcatttgaaaaatggcgttccatttgccacatct
gtgttcgatggcgcatctgagttagacattcaatatatgttagatctggcttacccagat
agcgatccaaaaaccaaactgttgcaattctcagctaacaaaacgcaagttaaattgttt
gatggccgcacaggcgaggcgtttgaaaggcctgtcacagtaggttatatgcatgtactt
aaattacatcatttggttgatgataagatgcacgcacgttcaactggaccttattctctt
gtaacgcaacagccacttggcggtaaagcgcaatttggtggacaacgttttggtgagatg
gaagtttgggcgctggaagcatacggtgctgcttataccctacaagaaatgttgactgtt
aaatcagacgatgttgctggtagaactaaagtatacgaaaacatagtcaagggtgagcat
aagattgatgcaggtatgcctgagtcattcaacgtgttggttaaagaaattcgttcactc
gctattgatattgacctcgatagaaactaa
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integrated database retrieval system
