Methylocystis bryophila: B1812_19550
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Entry
B1812_19550 CDS
T04837
Name
(GenBank) ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mbry
Methylocystis bryophila
Pathway
mbry03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbry00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B1812_19550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbry03019
]
B1812_19550
03009 Ribosome biogenesis [BR:
mbry03009
]
B1812_19550
Enzymes [BR:
mbry01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
B1812_19550
Messenger RNA biogenesis [BR:
mbry03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
B1812_19550
Ribosome biogenesis [BR:
mbry03009
]
Prokaryotic type
rRNA processing factors
B1812_19550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
RbsD_FucU
Motif
Other DBs
NCBI-ProteinID:
ARN82908
UniProt:
A0A1W6MZB3
LinkDB
All DBs
Position
complement(4114461..4117466)
Genome browser
AA seq
1001 aa
AA seq
DB search
MANKMLIDASHPEETRVVVLRGNKVQEFDFEAADKKPLRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPVADRLALLEEENRAHLQAEDEEPRPQQQTRGRRSRRRR
FESAEKRQRTDETLSEAAPDESLNEARETESSEALATFSEEFATQAAPEAIEIPSFETAA
PEPVIDAEIAAAPEIEQIPEAQVEATEDRPLTEAEPAAAEHETLSVDPSGFGVIELGTVD
EGEPQAVEQDHEAKARRQDERDEAAQRLREARHEPESEEEEEEEEAEDEEQHVEHIGGDA
MEEVPYRAPRMRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRFCVLMPNT
ARGGGISRKITDGADRRRLKEIVQELEVPEGMGVILRTAGATRTKPEVKRDFEYLLRMWE
SVRELTLRSSAPNLVYEEGSLIKRAMRDLYGQDIDEVLVAGAEAHREAQAFMRMLMPSHA
RNVKLYREPTPIFAEAGVEAQLDAMFSNQVTLKSGGYLVINQTEALVAIDVNSGRSTREH
NIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEESRNNRSVERRIKEALKNDRAR
IQVGRISHFGLLEMSRQRIRAGVVEGSTAPCPHCAGAGTIRSTASIALHVLRVLEEALVR
SAAHDVVLRTRSPVALYILNQKRAHLQAMEHRFGVHIMVAADDSLTGANYHALERGEPAS
GLRARPSPQHLRVDSLPPELAQEEAEEAETTVDFAEARSPMAEGRPRASEEPEEAELAAG
GAEGDEEDADAQPRSRRRRRRRGRGSGRDDFAANLGEAPEAYPEQLQRDEQAQPSDEGLA
FMAQLAGQPTADGETRRPTRGRGRGPGRWTRSTPLAPEYRNPQALPEGEPVAAEAVTEEP
RGEEPLESPAQVAAAAEPAQEAIAVESAPEAPQEVKTIETPLPEPETARESAPIEIDAAA
EVDEQPAQSHAARSEVVITEADPSAPKKGGWWQRARATFGG
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaaaatgctgatcgacgcctcccacccggaagagacccgggtcgtggtgctg
cgtgggaataaagtccaggaattcgatttcgaagccgccgataaaaaaccgctccgcggc
aatatctacctcgcgaaagtgactcgcgtcgagccgtccttgcaggcggccttcgtcgat
tacggcggtaaccgccacggatttctggctttcgccgagatccatcccgattattaccag
atcccagtcgcggaccggctcgcactgctcgaagaagaaaaccgcgcccatcttcaggcc
gaagacgaggagccgcggccgcaacagcagacccgcggccggcgctctcggcgccgtcgt
ttcgaatcagccgagaagcgccagcgcacggacgagacgctgagcgaggcggcgccagac
gagagtttgaacgaggcgcgggagacggagtcttcggaagcgctcgcaaccttttcggaa
gagttcgcaacccaagcggcgccagaggccatagagataccctctttcgagacggcggcg
cccgaaccggtcatcgacgccgaaatcgccgcggcgccagagatcgagcagatcccggaa
gcccaggtcgaagcgaccgaggacaggcccctgaccgaggccgagcccgccgccgccgag
cacgagaccttgtcggtcgatccgtcgggcttcggcgtcatcgagctcggcacggtcgac
gagggcgagcctcaagcggttgagcaggatcacgaagccaaggctcgccgccaggacgaa
cgcgacgaagccgcgcagcggctgcgcgaggcgcgacacgagccggaaagtgaagaggaa
gaggaagaggaagaggcggaagacgaggagcagcacgtcgagcacatcggcggcgacgcc
atggaggaggttccttaccgagccccgcgcatgcgccgccaatacaagatccaggaggta
atcaagcggcgtcaggtgctgctcgtgcaggtagtcaaggaagagcgcgggaacaaaggc
gcggcgctgacaacctatctttcgctcgccggtcgcttctgcgtgctgatgcccaacacg
gcgcgcggcggcggcatctcgcgcaagatcaccgacggcgccgaccgcagacgcctcaaa
gagatcgtccaggaactcgaagtgccggaaggcatgggcgtgatcctgcgcacagccggc
gcaacccgcacgaagcccgaggtcaagcgcgacttcgaatatctgctgcgcatgtgggaa
agcgtgcgggagctgacgctgcgctcgagcgccccgaacctcgtctatgaggaaggctcg
ctcatcaagcgcgctatgcgcgatctctacggacaggacatcgacgaggttctcgtcgcg
ggagcggaggcgcaccgcgaggcccaggccttcatgcgcatgctgatgccgagccatgcc
cgcaacgtcaagctctaccgcgagccgacgccgatcttcgcggaggccggcgtggaagcc
cagctcgacgcgatgttctccaatcaggtcacgctgaagtcgggcggctatctcgtcatc
aaccagaccgaggcgctcgtcgcgatcgacgtgaactcgggacgctccacgcgcgagcac
aacatcgaggacacggcgctacgcaccaatctcgaggccgccgacgaggtcgcgcgccag
ctgcgcttacgtgacctcgcgggcctcatcgtcgtcgacttcatcgacatggaggagagc
cgcaacaatcgttcggtcgagcgcagaatcaaggaggcgctgaagaacgatcgcgcgcgc
attcaggttgggcgcatctcgcatttcggcctgctggagatgtcgcgccagcgtatccgg
gcgggtgtcgtcgagggttccaccgcgccctgcccgcattgtgcgggcgccggcacgatt
cgctcgacggcctcgatcgcgctgcatgtgctgcgcgtgctcgaggaggcgctcgtccgc
agcgctgcgcatgacgtcgtgctgcgcacacgctcgcctgtcgcactctacatcttgaac
cagaagcgcgcgcatctgcaggccatggagcaccgcttcggcgtgcacatcatggtcgcc
gctgacgactcgctcacgggcgcgaattaccatgcgctggagcgcggcgaaccggccagc
ggtttgcgggcgaggccttcgccgcagcatttgcgcgtcgattccctgccgcccgagctc
gctcaggaggaagccgaggaagcggaaaccacggtggactttgccgaagcgagatccccc
atggccgaagggcgtccgagagcgtctgaagagcccgaggaggccgagctcgcggcgggc
ggcgccgagggcgacgaagaggacgccgacgctcagccccgctcgcgccggagacgccga
cgacggggacgcggcagcggtcgagacgactttgctgcgaaccttggcgaagctcccgaa
gcctatccggagcagcttcagcgggatgaacaggcgcaaccttccgatgaggggctggcc
tttatggctcagctcgcgggtcagcccaccgcagacggcgagacccgccggcccacgcgc
gggcgcggccgcggccccgggcgctggacccgctccacgccgctagcccccgagtaccgc
aatccgcaggctctccctgagggtgagcccgtcgccgcagaagccgtgaccgaagagccg
cgcggcgaggagcctttggagtcgcctgcgcaggtggccgcagcggcggagccggcgcag
gaggctatagcggtagagtcggctcccgaggctccgcaggaagtcaagacgatcgagacg
cccctgcccgagcccgagacagcccgagagtcggcgcccatcgagatcgacgccgccgca
gaggtggacgagcagcccgcgcagagccacgccgcgcgctcggaggtggtcatcaccgaa
gcggacccgtccgcgcccaaaaagggcggctggtggcagcgcgcccgggcgacattcggg
ggttag
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