Methylococcus capsulatus: MCA0474
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Entry
MCA0474 CDS
T00205
Name
(GenBank) ATP-dependent DNA helicase, UvrD/REP family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MCA0474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mca03019
]
MCA0474
03400 DNA repair and recombination proteins [BR:
mca03400
]
MCA0474
Enzymes [BR:
mca01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCA0474
Messenger RNA biogenesis [BR:
mca03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MCA0474
DNA repair and recombination proteins [BR:
mca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MCA0474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
AAA_30
AAA_22
AAA_11
RPA_C
Motif
Other DBs
NCBI-ProteinID:
AAU90348
UniProt:
Q60BJ3
LinkDB
All DBs
Position
complement(491565..495974)
Genome browser
AA seq
1469 aa
AA seq
DB search
MPPWVRHQFPEASVLIRRLRDTPCSDPACPWCSERHNARKELQRWFGLPDFRPEPRGEDG
RSLQQSIVEAAMRGEHVLGILPTGTGKSLCYQIPALSRYEKTGALTVVISPLVALMADQI
NGLANRGIHCCAAINGLLSMPERSDALDRVRLGDIGILVISPEQLRNRAVRKVLAQREIG
AWVLDEAHCLSKWGHDFRPDYRYVGRFIRDSAGDATIPPVLCLTATAKPDVVADIVGHFS
ARLGIGLRVFDGGSQRSNLDFVVVQTTPAEKFADIHRILMSDLPPDVPGGAIVYCATRRK
TEEVAAFLRATGIAAAHFHAHLPPETKKNVQENFIRGELRVIAATNAFGMGIDKPDVRVV
IHADIPGSLENYLQEAGRAGRDREAARCVLLYTQEDVERQFGMSAHSRLSLKEIRAVLKA
LRRLDRRKRLDGEVVATPGEILAEESEGDFGRDLATDDTRVRTAVAWLEEAVLLSREENR
CQVFPSSLRVGSVDEARRKLAKQPMHEEYRRQLLDLIAALIGADPDEGVSTDELMGLLGL
NPERIRNALYDLERLGLASNDTVLTAFVHSGVERASMKRFEEAVALETALIAELRLAAPD
LDKDESSMLHLRIAAQRLKDAGHPGALPEKLQRLLSGLAADGRAEDSGTGSLRLRRIDSE
SVNVTLQRRWSALEKTARLRRIAAQRLLEHLLACLPSGTRGTDLLAETTLGKLTAAMEGD
LMLKAEMKNPPKLLQTALLWLHDQDVIRLNKGFTVFRAAMTIRLAPDKRGFAKADFEPLK
LHYDEQVLQIHVMAEYAQRGLKAVAEALRMAMDYFRLDRDAFLRQWLPGREKELSRQTTP
ESWRNIVESLQNPAQQRIVADDREQTNVLVLAGPGSGKTRVLVHRIAYLIRVRRENPRGI
LALAYNRHAAAEIRKRLAGLIGDDARGITVLTCHALAMRLAGVSFAERWEKTGDEVFQEV
LRQAIALLKGEGLPPEEADEQRDRLLAGYRWILVDEYQDIGPDQYELISALAGRTLQDED
SRLNLLAVGDDDQNIYAFNGASVEFIRRFEADYAAKPAYLTENYRSTSRIIEAANRLIGD
APDRMKQAHPITIDRARKKAAPGGDWEAIDPVGQGRVQILPAGVDERTQAVTVMREFERL
ASLAPNWDWTRCAVIARKWDLLEPVRSYCELAKIPVQMAGEETVPFRYLRETRTLLAWLK
DTKLVDAAKILSWLDERPAGPWWNALRQAAEEYAVETGGAELPSAHFEEWLAEWGREIRR
RPSGLMLLSAHRAKGLEFDHVAVLDGGWKAGAKEDRHSPRRLYYVAMTRARKTLTLTRIE
PNSPLLDSLAGIPDVLHRPPTEHMQLPPELSRRYRKLTLKDVHLGFAGRYPETDPIHQAI
AALEAGDPLWLKRKNDVWELNDAGGNTVGRLARAFDPPKGMICIQARAAAIIIRRRDETE
ADYLSGVCCDAWEVVIPELVFEPAGKGRT
NT seq
4410 nt
NT seq
+upstream
nt +downstream
nt
atgccaccctgggtgcgtcaccaattccccgaagcgagcgtcctgatacggagactgagg
gacaccccttgcagcgatccggcctgtccctggtgcagcgaacggcacaacgcccggaaa
gaactccagcggtggttcggcctgcccgacttccgccccgaaccccgcggcgaagacggc
cgttcgttgcaacagtccatcgtcgaagccgccatgcgcggggagcacgtgctgggcatt
ttgccgaccgggaccggaaaatccctctgttaccagattccagccttgtcccgttacgag
aagacgggggcgctcaccgtagtgatctcgcctctggtcgccttgatggccgatcagatc
aacggcttggccaaccgcggcatccactgctgcgccgcgatcaacggcctgctgtcgatg
ccggaacgctcggatgcgctggaccgggtccggctgggcgatatcggcattctcgtcatt
tcgcctgaacagttacgcaaccgcgccgtgcgcaaggtgctggcacaacgggagattggc
gcctgggtgctggacgaagcgcactgcctgtccaaatggggacatgacttccggcccgat
taccgctacgtcggacgtttcatccgggacagtgccggcgacgcgacgataccgccggtg
ctatgcctcaccgcgacggccaagcccgatgtggtggccgacatcgttggacacttcagc
gccagattgggcataggccttcgggtattcgacggcggctcgcagcggagcaacctggat
tttgtcgtagtgcagaccacgccggcggaaaaattcgccgacatccaccggatattgatg
tccgatctgcctccggatgtccccggaggcgccatcgtctattgcgccacccgccgcaag
acggaggaagtggccgcgtttctccgcgccacagggatcgccgcggcgcatttccacgcc
catctgccaccggaaacgaagaaaaacgtgcaggaaaatttcatccggggcgaattgcgg
gtgatcgccgccaccaatgccttcggcatgggcatcgacaaaccggatgtacgcgtcgtg
atccatgccgacattcccggctcgctggaaaactatctgcaggaggccggccgcgctggc
cgcgaccgggaggcggcgcgctgtgtattgctctatacccaggaggacgtcgaacgccaa
ttcggcatgtccgcccattcgcggctcagcctgaaggagatacgagctgtcctgaaagca
ctcaggcgcctggaccgcagaaagcggctggacggtgaggtggtcgccacgcctggggaa
attctcgccgaggagtccgaaggcgatttcggacgggacttggccaccgacgacacacgg
gtacgcaccgccgtcgcctggctggaagaagccgtgctgctgagccgggaagaaaatcgc
tgtcaggtgtttccctcttcgcttcgcgtcggctcggtggacgaggcgcgccgaaagctc
gccaagcagccgatgcacgaagaataccgccgccaactattggatctgatcgccgccctc
atcggcgcggatcccgacgaaggggtctccaccgacgaactgatgggcctgttgggcctc
aacccggaacggatccgcaacgcgctttacgacctcgaacgcctaggtcttgccagtaac
gacacggtgctcaccgcgttcgtccacagcggcgtggagcgcgcgtcgatgaagcgcttc
gaagaagccgtagcgctggaaaccgcgttgatcgcggaactcagactggccgcgcccgat
ctcgacaaagacgagtcctcgatgctccatctgcgcatcgccgcacagcgcttgaaagac
gccggccatcctggcgctctgccggaaaagctccagcggctgttgtccggcctggccgcc
gacggacgcgcagaagacagcggaaccggcagccttcggctgcgccgcatcgacagcgag
tcggtgaacgtcacgctgcaacggcgatggtccgcactggaaaagaccgcccggctaagg
cgcattgcagcccagcgtctcctggaacacctgctggcctgtcttccgtccggcacccga
ggcaccgacctgctggcggaaaccacactgggcaagctcaccgcggccatggaaggcgac
ctgatgctgaaagcggaaatgaagaacccgcccaagctgctgcaaacggccctgctctgg
cttcatgaccaggacgtgatccggctcaacaaaggcttcacggtattccgggctgccatg
acgattcgcctggcgccggacaagcgcggtttcgcaaaagcggatttcgagccgctcaag
ctccattacgacgagcaggtactgcaaatccacgtgatggcggaatacgcccaacgcggc
ctgaaagccgtcgccgaggctctgcggatggcgatggactatttccggctggaccgcgat
gctttcctgcgccagtggctgccgggccgagagaaagagctgtcgcgccagactacgccg
gaatcctggcgaaacatcgtcgagtcgctgcaaaacccggcacagcaaaggatcgtcgcc
gacgaccgcgaacagaccaatgtcttggtgcttgccggccccggctcgggcaagacccga
gtgctggtgcaccgcatcgcctacctgatccgggtacggcgggagaacccccgcggcatt
ctggccctggcgtacaaccgccatgccgccgcagaaatccgcaagcgcctggccggcttg
atcggcgacgatgcacgcggaatcacggtgctgacctgccacgcgctcgccatgcgcttg
gcaggcgtgagcttcgccgaacgctgggaaaaaaccggggacgaggtcttccaggaagtc
ctgcgtcaagccatcgccctgctgaaaggcgaaggactgccgccggaagaagccgacgag
cagcgcgaccgcctgctcgcaggctaccgctggattctggtggacgaataccaggacatc
ggaccggaccagtacgaactgatctccgctctggccgggcgcaccctgcaggacgaagac
agccggctcaacctgctcgcggtcggggacgacgaccagaacatctacgccttcaacggc
gcctcggtcgaattcatccgccgcttcgaagcggattacgccgccaaaccggcctatctg
accgaaaactaccgatccacgtcccgcatcatcgaagccgccaaccggctcatcggcgat
gctcccgaccgaatgaaacaggcgcaccccatcaccatcgaccgggcgcgcaaaaaagcg
gcgcccggtggcgattgggaagccatcgaccccgtcggccagggccgcgtccagatcctt
ccagccggcgtcgacgagcggacccaggcggtcaccgtcatgcgcgaattcgagcgcctg
gcgagcctcgctccgaactgggactggacgcgatgcgcggtaatcgcccgcaaatgggac
ctgctcgaaccggtgcggagctattgcgagctggcaaagattccggtccagatggccggc
gaggaaaccgtgccgttccgatatctgcgtgagactcgaaccctgttggcgtggctgaaa
gacaccaaacttgtcgacgctgccaagatcctgtcgtggctcgacgagcgccccgccgga
ccatggtggaatgccttgcgccaggccgccgaggagtatgcggtcgaaaccggcggcgcc
gaactgccgagcgcacatttcgaagagtggcttgctgagtggggccgggagatacgccgc
cgcccttcaggattgatgctgctctccgcccatcgcgccaaggggctggaattcgaccat
gtcgccgtactcgacggcggctggaaagccggcgccaaggaagaccggcacagtccccgc
cgcctctattacgtggcgatgacccgggcacggaagaccttgacgctgacgcgtatcgag
cccaactctccgctgctcgattcgctggctggaatcccagacgttctgcatcgtccaccg
acagaacatatgcagctcccgccagagctttcccgccgctaccggaaactcacgctgaaa
gacgtgcacctcggcttcgccggacggtaccccgaaaccgatccgatacaccaggcgatc
gccgcgctcgaagccggcgatccgctctggctgaaaaggaaaaacgatgtctgggagtta
aacgatgccggcgggaataccgtcggacgcttggcacgggcctttgatccccccaaaggc
atgatctgcatccaagcccgagccgccgcgatcatcatccggcggcgagacgaaaccgaa
gccgactatctgtctggagtctgttgcgatgcctgggaagtggtgattcccgaactggtg
ttcgaaccggcgggaaaggggcggacatga
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integrated database retrieval system
