Mytilus californianus (California mussel): 127703183
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Entry
127703183 CDS
T08804
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
127703183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127703183
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
127703183
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
127703183
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
127703183
NCBI-ProteinID:
XP_052063669
LinkDB
All DBs
Position
Unknown
AA seq
2585 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKSSITEISHLVNQHGAEADRHLFRCLFSHVDFSGD
GRSSGKDFHQTQYLIQECCSLLSKPNFVSILCYSVDNPLHHQKNLKPSPHLLPQISKVIK
LNRVQEVTFGIALLHSSNSETRQYASQFVRQKLPDLIRSYVDPESSLRQEGGLQDVAIEV
LHLLVVHLIRNKDNFGIGNDQKEVFLSTLRKDFPHERVPVILGPLLYPESEDLAVDKLTD
ISNMPKSVVCKSNMPNSVFDSSLDYMILERGYSCTASPEECRVMLMQFGVREVTPASVAK
VLGMMARTPTGLNMHSDQVTSDWDMSDKTEKPGINTWNVDVFIGVVQDLVCTSWNNRQAP
HFNWRDVVIELDHPNFMVLNKKGLRLLVQGLIKGLQEVFPIDYIYRPWKNTEGQLSLIVQ
ALRNPDVFCFADYPCHTVVTDILKAAPDDDNRDITTWRSLDMVETLLRLSEAGHYQQISE
LFKFPIQNCPDMLVLALLQITPTWNTLKQELISTLMPIFLGNHPNSAVVLHYAWHCQGHS
NTIRTLIMHSMAEWYMRGEQHDQNRLSRILDCAQDLKALSMLLNATPFAFVIDLACLASR
REYLKLDKWLSDKIREHGEPFIQTSVNFLKRRCPQLMGGPPKDDQQQIKSQMLPPDTIGT
MLACLQQCASQVSQELSEAILTMVANANILMNKTRPVGPAGMGPKPTIPNIGPTLGNPLD
SLENSNPLGIPKSWGMSGGGFPQTLASSGTGFPPSLSSSGTGFPPSLTSSGTGFPPSLST
SGTGFPQPLSSSGAGFPQSLSTSGSGFPQSLSTSGSGFPQSLSTSGSGFPQSLSSSNSGF
PQSLSSSGSGFPQSLSTSGSGFPQSLSTSGSGFPQSLSTSGSGFPQSLSTSGTGFPQTLS
SSSGAGFPQSLASLTTSTTPGSPAKGFPPTSAASFGAIQSLTSQLQNISMNNPIGAPRSS
VNSLGAIMAGAGIKPTQQQQPQTPQPTQLPGQQPQQPPIRPAPSGDMTNIFADISQQFST
EVEDEANSYFQRIYNQPPHPTMSIDEVLDMLKRFKDSPNRREKDVYECMLRNLFEEYRFF
PQYPERELLTTAYLFGGIIEKGLATYMALGIALRYVLEALKKPHNTKMYIFGIAALDRFK
TRLKDYPQYCQHLAAIPHFSQFPNHLIEFVEYGARSQEPPPHTTSSRSLTPTVPGISNAL
TAGLTNNLGITSGTVTPTTTLESMVATTTTLTTSVTTTATTTTSKPAAALPKPSIASATN
IDTLLAGQLKENIPPPPESVQDKIFFIFNNLSLANMNQKGEELKKEVSEDYMPWVGQYLV
MKRASIEPNFHTLYASFVDVLGNGEFQQQVIRETFRNIKVLLCSDKGDANFSDRTLLKNL
GHWIGMLTLAKNKPILQLEIDIKSLLYEAYHKGARELLYVVPFSAKIIESCAKSKVFKPP
NPWTMGIMNVLAELHMEPDLKLNLKFEIEVLCKTLSIDLSDCRPTMYLKDVSRISEIEPQ
LSPGSKLPHPLPDLTPQPGDQAAMMTAGTPTVPTTARGTTPTTTPNLPPRPQFSYDDVNT
ANMATIGNLCTINDQIALFQANPQLKQLVKIAVEKSLQELLPPVVERTIKISLVTCEQII
KKDFALDPDESRMRAAAHHMVRHMISGLALITSREPVLVNISNNLKSAFLSTLRIDANFQ
GATPQQKEMIEQAAQQVAQDNTELACVFIQKTAIEKAIPDIDKRLATEFELRKHARTEGR
RYCDPVVLTYQAERMPEQIRLKVGGATPSQLSVYEEFARNIPGFLPAGDPSFPPGAVPAK
PQPTYSDESFQLFERIIREIEQHVQQLQIMFPASNPQINQLHSLLEALIMLRNSREQVTV
VNLIQKAVEGLLEHLQGLSADQELTLRFKECNLTVLRALQEMRAFGFGGSWTNKQVTRCM
IEANEQHKYTIEAVDCLIRSQLVNMPQYDMYLAQLMENGMNYMAVSLAMQVVQRFCVDDK
ASATESDFTNTIEALTTISTRTRQSPEGLSNLLENLRPNTDFGLERALGGPTTMMQTGIL
QAREIDDPPGLHDKAELLLRDWVNMYHSPQAGRDSTKAFTAFVQSMHQQGILKTDDLITR
FFRLCTEMCVDLCYRALIDQTQNPAIVRTKCFYTLDAFVRLIALLIKHSGDTTNTITKIN
LLNKVLGIVAGVLLQDHAVRNTEFQQLPYHRIFIMLFIELNAPDHVLENINYQVLTAFCN
TFHVLRPAKAPGFAYAWLELISHRVFIGRMLALTPQQKGWGMYAQLLIDLFKFLSPFLRN
AELTKPTQMLYKGTLRVLLVLLHDFPEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMR
LPDPFTPNLKVDMLADIAHAPRILTNFANMIQPAQFKKDLDSYLKTRSPVTFLSDLRSYL
QVKNSNEPGMRYNIPLMNALVLYVGTQAIAFINSKGQTPSMSTIAHSAHMDIFQNLGVDL
DTEGRYLFLTAIANQLRYPNSHTHYFSCTLLYLFVEANIEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNPQFKFWNHEFVHCAPEIEKLFESVARSCMQPKSGGSGNTQNLRETD
TTELH
NT seq
7758 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcattatcttttgccttggctgaaataagttattcagtggccaatttg
acaaagaaaaattttaaatcgagtataacagaaatcagtcatcttgtaaatcaacacgga
gcagaagctgatagacatttatttcgttgtcttttttctcatgttgattttagtggtgat
ggtcgtagtagtggaaaagactttcaccagactcagtatttgattcaagagtgttgttca
ttgctgagtaaacccaattttgtatccatattgtgttattctgttgacaatccattacat
catcaaaagaatttgaaaccctcccctcatttgctgccacagatcagcaaagttataaag
ttaaatcgtgttcaagaagtaacatttggcattgcacttctccattcttcaaacagtgag
actcgtcaatacgcaagccagtttgtcagacagaagcttcctgaccttattagatcctat
gtcgatccagaatcaagtttaagacaagaaggtggactacaggacgttgccatagaagtt
ttacatctactcgtggttcacctcattcgtaacaaagataactttggaattggaaacgat
caaaaggaagtgtttttgtcaacattaaggaaagatttcccacacgaaagagttccagtt
attttgggacctttattgtatccagaatcggaagatttagctgttgataaactgacagat
atatcaaacatgcctaaatcagtggtatgtaaatctaacatgcccaactcagtgtttgat
tcctccttggattatatgatcttagaaagaggatacagttgtacagcaagtcctgaagaa
tgcagagtaatgctaatgcagtttggagtaagggaagtaactcctgcatcagttgctaaa
gtacttggaatgatggcaagaacaccaacggggctaaacatgcatagtgatcaggtgact
tctgactgggatatgtcagataagacagagaagcctgggattaatacatggaatgtggat
gtcttcatcggtgtggtacaagatttggtatgtacctcgtggaacaacagacaggctcct
cactttaattggagagatgtggtgatagaacttgatcaccctaacttcatggtcctcaac
aaaaagggactacggttacttgtacagggactaattaaaggactacaggaagttttcccc
attgattacatatacaggccatggaaaaatacagaaggacagttgtcattgattgtacag
gccttacgtaacccagatgtcttctgttttgctgattacccttgtcacacagtggtaaca
gacatacttaaggcagcaccagatgatgacaatagagacattacaacatggagatcatta
gatatggttgagacattactgaggttatcagaagcaggacattaccaacaaatatccgag
ttattcaagttcccaatacaaaactgtccagacatgctggtattggcattactacaaatc
acacctacatggaacacattgaaacaagaactgatctccactttgatgccaatattcctc
ggaaatcatccaaattcagctgttgtactgcattatgcatggcattgtcagggtcattcc
aatacaattcgtacccttatcatgcactctatggctgaatggtacatgaggggagagcaa
catgaccagaacagattatctcgaattctggattgtgctcaggacttgaaggcattatca
atgttgttaaatgccacaccatttgcctttgtgatagacctagcttgtcttgcctcccgt
agggagtacctcaagttagacaagtggttatcagataaaatcagagaacatggggaacca
tttatacagacttctgtaaactttctgaaaagaagatgtccccagttgatgggtggacca
ccaaaggatgaccaacaacagatcaaaagtcaaatgctacctccagatactatagggaca
atgttggcttgtctgcagcagtgtgctagtcaagtatcacaagagctgtcagaagccata
ttaacaatggttgccaatgccaatattttgatgaataagactagaccagttggccctgct
ggaatgggaccaaagcctactataccaaatattggcccaacattaggaaatcctctggat
tcattagagaattcaaaccctttaggaatcccaaaatcttggggcatgagtggtggaggt
ttcccacagactttggcttccagtggaacaggatttccaccaagtttgtcttcaagtgga
actggatttccaccaagtttaacttctagtggaacaggatttccaccaagtttatctact
agtggaacaggatttccacagcctttatccagcagtggtgcaggatttccacaaagtctg
tccaccagtggctctggatttccccaaagtctatcaaccagtggctcaggatttccacaa
agtttatctacaagtggctcaggatttccacaaagtctatccagcagtaactctggattt
ccacaaagtctatccagcagtggctcaggatttccccaaagtctatcaaccagtggctca
ggatttccacaaagtctatcaaccagtggctcaggatttcctcaaagtttatctacaagt
ggctcaggatttccacaaagtttgtccactagtggcacaggatttccacaaactttgtct
agtagcagtggagcaggatttccacagagcctggcatcccttacaacatcaaccacacct
ggttccccagctaagggatttcctcctaccagtgctgctagctttggtgcaatacaatct
ttaacatcacagcttcaaaatatatccatgaacaaccctataggagcccctaggagctct
gtgaactcattaggtgccataatggctggagctggaataaaaccaacacagcaacagcag
ccacaaacaccacagccaacacagcttccaggtcaacaaccacaacagccacctattaga
ccagcaccatctggtgacatgacaaatatatttgctgacatatcccagcagttttctaca
gaagtagaagatgaagcaaattcttacttccagaggatttataaccagcctccgcatcct
acgatgtctatagatgaagtcctggacatgctgaaaagatttaaagactcccctaacagg
agagaaaaggacgtgtatgaatgcatgctgagaaatttgtttgaagaatacagatttttc
ccacagtaccctgaacgagaattattaactactgcatacctttttgggggtataattgaa
aaggggcttgcaacgtatatggctttaggcattgcattgcgatatgttttagaagctttg
aagaaaccacacaacacaaagatgtacatatttggtattgctgctttagacagatttaaa
acccggttaaaggattatcctcaatattgtcaacatttggcagctatacctcattttagt
cagtttcctaatcatctcatagagtttgtcgaatatggtgctagatctcaagaaccacct
ccgcatacaacatcatctagaagtttaactccaacggtgccaggcatttctaatgccctc
acagcaggactgaccaataaccttggtataacgtcaggcactgtaacaccgactacaaca
ctggaaagtatggtggccactacaacaactttgacaacttctgtaacaacaacagcaacc
acaacaacatcaaaaccagctgcagctcttccaaaaccatcaatagctagtgctacaaat
attgacacattgttagcaggacaattgaaagaaaacataccaccacctccagaatctgtt
caggacaaaatctttttcatattcaacaatctctctttggctaatatgaatcaaaagggt
gaggaattgaagaaggaagtatctgaggattatatgccttgggttggtcaataccttgtc
atgaagagggccagtattgaacctaactttcacacattgtatgccagttttgttgatgta
cttggaaatggagaatttcaacagcaagttatcagagagacttttagaaatataaaggtt
ttgttatgcagtgataaaggagatgccaatttttcagaccggacattattgaagaattta
ggtcactggataggaatgctgacgctagcaaagaataaacctattcttcagcttgagata
gatatcaagtccttgctgtatgaagcttaccacaaaggggcaagagaactactgtatgtt
gtgccatttagtgctaaaataatagaatcatgtgctaaaagtaaggtttttaaacctcca
aatccatggacaatgggaataatgaatgttttggcagagctacatatggaaccagatctg
aaattgaacctgaaatttgagatagaagttttatgtaaaactctaagcattgacctgagt
gactgtcgaccaactatgtatctgaaagatgtaagtagaatttcggaaatagagccccag
ttgtcaccaggtagtaagctaccacatccactgccagacttgaccccacagcctggggac
caagcagccatgatgacagctggaacaccaactgttccaacaacagccagaggcaccaca
ccaacaacgacgcctaacttaccaccacgtcctcaattctcatacgatgatgtcaatact
gctaacatggcaaccattggtaatctgtgtactattaacgatcagattgcactattccaa
gccaatcctcagctgaaacagctggtaaagattgcagttgaaaaatctttacaggagtta
cttcctcctgttgttgaaagaacaataaagatttcattggtgacctgtgaacaaattatc
aaaaaggattttgcattggatcctgatgagagcagaatgagggcagctgcacatcacatg
gttcgtcacatgatttctggactggctttaattactagcagggaaccagtacttgttaat
atcagcaacaatttaaagagtgctttcctgtcaacactaaggattgatgcaaatttccaa
ggagcaactccacaacaaaaggaaatgatagaacaagctgcacaacaagtagcacaggat
aatacagaattagcttgtgtcttcatccagaaaactgccatagaaaaagcaataccagat
attgacaaaagattagctacagaatttgaacttagaaaacatgctagaacagagggtaga
cgttactgtgatcctgtcgtactgacgtatcaagctgagagaatgccagaacaaatcaga
ttaaaggttggaggagccactccaagtcagttatctgtatatgaagagtttgccaggaac
atcccaggatttctaccagctggagatccctcctttcctcctggagctgtacctgctaaa
ccacagcctacatacagtgatgaatccttccaattgtttgagagaattattcgtgagata
gagcaacacgtacaacagttacagatcatgttccctgccagtaacccacagatcaatcag
ctccacagtcttttggaagccttgatcatgctcagaaattccagagaacaagttacagta
gtcaatctaatacagaaagctgttgagggtttattagaacatctgcaaggattatcagca
gatcaggaactcacgttgaggttcaaggaatgtaacttgacagttctgagagcgctacag
gaaatgagagcatttggatttggcggatcttggacaaataaacaagtaactaggtgtatg
atagaagctaatgaacaacacaaatatacaatagaagctgtagattgtttgatacgaagt
cagctagttaacatgccccagtacgacatgtatctagcccagctgatggagaatggtatg
aattatatggctgtaagtctggccatgcaggtagtccaaagattctgtgttgatgataag
gcttcagctactgagagtgactttacaaacaccattgaagcattgacaacaatatctact
cgaactagacaatccccagaaggcttgagtaacttactggagaatttgagaccaaacact
gactttggcttagagagagctttgggaggtcccacaactatgatgcagactggtatatta
caagccagagagatagatgatcctcctggacttcatgataaagcagaactgttattgaga
gattgggtgaacatgtaccactcaccccaggcaggacgtgacagcacaaaagcatttaca
gcatttgttcaatcgatgcaccaacaagggattctaaaaacagatgatctcattacacgt
ttctttcgtctttgtactgagatgtgtgtagatttgtgttacagggctttaatagatcag
acccagaaccctgctattgtcaggaccaaatgtttctatacacttgatgccttcgtaagg
ctgattgcactgctgataaaacattctggtgacactacaaacacaatcacaaagatcaat
ttattaaataaggtacttggtatagtagcaggtgtattactacaagatcatgcagtaaga
aacacagaattccaacaactgccatatcatcgtatatttatcatgctatttatagaactc
aatgcaccagatcatgtactggaaaatatcaactatcaagtcctaacagctttctgcaat
accttccatgtgttgaggcctgccaaagctccagggtttgcctatgcttggttagagttg
atatcacacagggtatttataggaaggatgttagcgctgaccccacaacagaagggttgg
ggaatgtatgctcagcttctaatagatttatttaaatttctgtctccattcttgaggaat
gctgaacttaccaaacctacacaaatgttgtataaaggaactttacgtgtattattggtg
ctacttcatgatttcccagaattcctctgtgattaccattatgctttctgtgatgtgata
ccaccaaactgtattcagatgagaaatctaatcttaagtgctttccctcgtaatatgagg
ttaccagatccatttacacctaatctcaaggtggatatgttggctgacattgctcatgcc
ccaaggatacttacaaactttgcaaatatgattcagccagcacagtttaaaaaggatttg
gattcatatttaaagacgagatcaccagtcactttcttgtcagatttacgttcatatcta
caggtaaaaaattcgaatgaaccaggaatgagatataacattcctctgatgaatgcctta
gtattatatgtagggacacaggcaatagctttcatcaatagtaaaggacaaactcctagt
atgagtactatagctcactcagctcatatggacattttccaaaatcttggagttgatctg
gatactgagggtcgatatttattcctgacagcaatagctaaccagctgaggtaccccaat
agtcacactcactatttcagttgtacgctcctttacctgtttgtagaggctaatattgag
gctattcaggaacaaattacaagagttctattggagagactgattgttaacaggccacat
ccatggggcttgttgatcacatttattgaacttattaagaatcctcagtttaaattctgg
aaccatgagtttgtccattgtgctccagaaattgagaaattatttgagtctgtagccaga
tcttgtatgcagccaaagtctggtggatcaggcaatacacaaaatctgagagaaactgac
accacagaacttcactga
DBGET
integrated database retrieval system
