Mytilus californianus (California mussel): 127719659
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Entry
127719659 CDS
T08804
Name
(RefSeq) 5'-3' exoribonuclease 1-like isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mcaf
Mytilus californianus (California mussel)
Pathway
mcaf03008
Ribosome biogenesis in eukaryotes
mcaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaf00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
127719659
09123 Folding, sorting and degradation
03018 RNA degradation
127719659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaf03019
]
127719659
03009 Ribosome biogenesis [BR:
mcaf03009
]
127719659
03016 Transfer RNA biogenesis [BR:
mcaf03016
]
127719659
03036 Chromosome and associated proteins [BR:
mcaf03036
]
127719659
Messenger RNA biogenesis [BR:
mcaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
127719659
mRNA degradation factors
5'-3' decay
5' exonucleases
127719659
Ribosome biogenesis [BR:
mcaf03009
]
Eukaryotic type
Pre-60S particles
RNases
127719659
Transfer RNA biogenesis [BR:
mcaf03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
127719659
Chromosome and associated proteins [BR:
mcaf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
127719659
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
DUF244
Motif
Other DBs
NCBI-GeneID:
127719659
NCBI-ProteinID:
XP_052081847
LinkDB
All DBs
Position
Unknown
AA seq
1820 aa
AA seq
DB search
MGVPKFYRWISERFPCLSETVKELQIPEFDNLYLDMNGIIHTCSHPDDNNPHFRITLEKI
LSDICHYIEFLFRIIKPKKVFFMAIDGVAPRAKMNQQRGRRFRSAREAEECEKKARESGE
VLPTEKRFDSNCITPGTEFMVTLHEHLKYFAAQKVSTDPLWHGVRVYLSGHETPGEGEHK
IMDFIRHDRTQPGYDHNTRHCLYGLDADLMMLGLSTHEPHFSLLREEVRFGGKKDNKRPA
TPEETTFHLLHLSLFREYLDFEFKDLKGKLPFGYDVEKIIDDWVLMGFLVGNDFIPNLPH
LHIRHDALPLLWKTYMNILPECGGYLNEGGHLNVPRFAKYMEELKKFDIESFTNMYTDLK
WLEGKRQQNHTESTPVKVKPSVALQNQFSAIGNSKEEDGDEALFGAGPGASSEEQTSPAE
EDEENVDTFDEEFILHKRNYYQTKLEFETVTAEVLRDQAEGYVRAIQWILLYYYEGVPSW
SWFYPHHYAPYISDITNFSDLEIEFDLGKPFFPFQQLMAVLPAASKDLLPAAYQPLMLNE
DSPIIDFYPVNFQTDLNDKQQEWEAVVLIPFIEEVRLIRAMKDVENRLTEREKARNKHGP
CLLYEYTTEDQGPYQSSMPGVFPDLGVNFACIKEVYMEDFYVEKGMLRKGLLPDCKLDVY
YPGFPTMKHIPHTAFLKKCNVKVFQMCSKGENMMLQILGSDEDRVRPRVLEDVAKDYIDE
IVHVGWPHLYQAKVISVSDDENRFVSTDDGTKKVKGKPKMMKHTLNEEERGLWHREVDSI
TMRYHDRQGVDVGPTFFLVKALPVNGKKYVCEAHGNIILEKQFAFLPIPFVLQATCKNIA
VHDPTYQAYRTLSELFPPKQSIFMMGSPHYGCQGEVLEVDEGENPRVRIHVSIPDEPDFQ
RIEAHPENFQQRYFPGYNLAQRLGINSHFLSRITGSIYIKKGSREESKDTRGDSVNIGLN
LKFTKRNEEVPGYTRLAPNGWTYSEKAMETIGAYLRKFPDLWDTIIGQQDNKTDNFYEAD
IFSKNGVTLKDVTTYLKTLPCSSIKTMKTGADILDEGIIQAIEKEVNRVMEENRKKQKRV
KMQVKPHLLFRPIPNESSIVPDQTVTFMLFDRVVSVRQGYTVPFGLRGIIVGIHKAEKES
DTMFEVVFDEAFIGGINIRCTGNKGYRVPKTAVVNISHGDRKYHGNTNRQKATENFNKNT
WKNDNSNNYKSGNYGDYNSGNSRNNSRGGYSGGNEGYNNRNQGRQLNNGHVNDNTYPRYG
WQGQQPKSSIDSANVTINESNRPKMDIRQESFDESQKDAPLQFVTPKIPSPGRPQKTQGQ
QQDSSRTMAAKMFQDSNNSEFADMWKELQKISPSDNTLLNQAAMALNKLPDDPALSPKIA
PTSFNVQSLFDEANKSNTAELTSKLKDLSVFKDSNMEDGVLVCSLKKSDQDKEDGSAALK
QMLNIDSEDSEKLPPTKEVPSYGRQVSVQELFDGVKQKSSSENVQSPSSNQFHQAQDQQY
PAKSSHNQNQPNQYNNVGRQSGNQGRPKSGGMHQNNPNINVSRNPVMQLLGFCKSFKLSD
PKYEFNRQIQSGGYTCVINLSNGARFQGATTPTQEAAAESAASIALHQLGATIQPSTQCH
PLMMMHQRIPPPGMMPHRMPPSPRSHQPQQPFPSAFRPVQPAGVMNIRGQGQQQNYHGGR
GGNQGIYSWPQQQEYSRPRQHSDSLPSTVICQPSEEQSPIKQSSQANPFIPLQVTKQQKT
PQKKKHKEDNVNNNMSTPPKSVPETSPPQISKGEKQSHIQESSEQKTVHESGSRTKKTPP
KQQTPNKRKSRLAANFSGMK
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtccctaaattttatcggtggataagtgaacgctttccatgtttaagtgaaact
gtgaaagaactacagataccagaatttgacaatttatatctggatatgaatggaatcata
cacacatgttctcatcctgatgataataatccacatttccgtatcacactagagaagata
ttgtcagacatctgccattatattgagtttttgtttcgtataataaaaccaaagaaagtc
ttctttatggctattgatggagtagctccaagggctaagatgaaccagcaaagaggaaga
agattcagatctgctagagaggcagaagaatgtgaaaagaaagctagagagtctggcgaa
gttttacctacagagaaaagatttgattctaactgcattacaccaggaacagaatttatg
gtgacacttcatgaacatttgaagtactttgctgcacaaaaagtatcaacagatccatta
tggcacggggtcagagtatatttatcaggacatgagactcctggagaaggtgagcataaa
atcatggattttatccgacatgatagaacccagccaggatatgatcacaacacaagacat
tgtctgtatgggttggatgctgatttgatgatgttaggactttccactcatgaaccacac
ttttcattattacgagaagaagtaagatttggtggcaagaaagataataaaagaccagca
acaccagaagaaacaacatttcatttattacatctatctttgtttagagaatatttagac
tttgaatttaaggacttaaaggggaagttaccatttggttatgatgtagagaagataata
gatgattgggtgttgatgggatttctagtcggcaatgattttatcccaaatcttccacat
ctgcatatcagacacgatgctctccccttactgtggaaaacttacatgaacatcctacca
gaatgtggagggtatttaaatgaaggtggtcatttgaatgtaccaagatttgcaaagtac
atggaagaattgaaaaagtttgatattgaaagttttacaaatatgtacacagacttaaaa
tggttagaaggcaaaagacaacaaaaccatacagagagtacaccagtcaaggtcaagcca
tcagttgctttacagaatcagttttcagcaataggtaatagtaaagaagaagatggggac
gaggctttatttggtgcaggaccaggggcaagctcagaagaacagaccagtcctgcagaa
gaagacgaagaaaatgtagacacatttgatgaagagtttatattgcataaacgaaattat
tatcaaacaaaattggaatttgaaactgttactgcagaggttttaagagaccaagctgaa
ggctatgtcagagccatacaatggatcttgctttactattatgaaggtgtaccatcatgg
agttggttttatcctcatcattatgcaccttacataagtgatatcacaaactttagtgac
cttgagattgagtttgaccttggaaaaccattttttcctttccaacagttaatggcagta
cttcctgctgccagtaaagatctacttcctgcagcatatcagcctctgatgttaaatgaa
gattcaccaatcattgacttctatcctgtcaattttcaaacagatttaaatgacaagcaa
caagaatgggaagcagttgtgttaatacctttcatagaagaggttagattgataagagct
atgaaagatgtcgaaaatagattgacagaaagggaaaaggccagaaataagcatggaccc
tgtctgttatatgaatatacaactgaggatcaaggtccataccagtcttcaatgcctggt
gtgttccctgacttaggagtgaactttgcttgtataaaagaagtttatatggaagatttc
tatgtggagaagggaatgctgaggaaaggacttttacctgattgcaaattagatgtatat
tacccaggattccctactatgaaacatattcctcatactgcatttttgaagaaatgtaac
gtcaaagtgtttcagatgtgtagcaagggagagaatatgatgttacagatacttggctca
gacgaggaccgagtaaggccgagggtattagaagatgtagctaaagattacatagatgaa
attgtacatgttggttggcctcatttatatcaagctaaagttatttctgtctcagatgat
gaaaacagatttgtatctactgatgatgggacaaagaaagtaaaaggcaaacctaagatg
atgaagcataccttgaatgaggaagaaagaggtttatggcacagagaagtggacagtatt
actatgagataccatgacagacaaggtgtagatgttggaccaaccttctttttagtcaaa
gctttacctgttaatggcaaaaagtatgtttgtgaagcacatggtaacataattttagag
aaacagtttgcctttttacctattccatttgttctacaagctacgtgcaagaatatagct
gtacatgatcctacataccaagcctacagaacattgtcagagttgttcccacctaaacaa
tcaatattcatgatgggatcaccacactatggatgtcaaggagaggtattagaagtagac
gaaggtgaaaatcctcgtgtaagaatacacgtctctataccagatgaaccagatttccag
aggattgaggctcatccagagaactttcaacagcgttatttcccaggatacaatttagca
cagagactaggaattaattcacacttcctgtctagaattactggttccatatacataaag
aaaggatcacgagaggaatctaaagatacaagaggggacagtgtaaatattggactgaac
ttaaagtttacaaagaggaatgaagaggtccctggatacacaagactggcacctaatggc
tggacttattcagaaaaagccatggaaacaattggagcatatctcagaaaatttccagac
ctttgggataccattataggtcaacaggataacaaaacagacaatttttatgaagcagat
attttcagtaaaaatggtgttacactgaaggatgtgacaacttatctgaagactttaccc
tgtagcagtataaaaactatgaaaacaggagcagatattctagatgagggtatcattcag
gctatagaaaaggaagttaatagagtcatggaggagaatagaaagaaacaaaagagagtg
aaaatgcaagtgaaaccacatcttctatttagaccaattccaaatgagagtagtatagta
ccagatcagacagtaacatttatgttatttgaccgtgtggtcagtgtcagacaaggatat
actgtaccctttggtttacgtgggataatagttggcatccacaaggcagagaaggaatca
gacactatgtttgaagttgtatttgatgaagctttcataggaggaattaatataagatgt
actggaaataaaggatatagggtacccaaaactgctgtagtaaacatatctcatggtgat
cgaaaataccatggtaacactaacagacagaaagcaacagaaaacttcaataaaaacaca
tggaagaatgacaatagtaataattacaaaagtggtaactatggtgattataattctggg
aattctaggaacaatagtaggggaggctactctggtggaaatgaaggatataacaataga
aatcagggtagacagctcaataatggtcatgtgaatgacaacacatatcctaggtatggc
tggcagggtcaacaaccaaaatcatcaatagatagtgccaatgtgacaataaatgaatct
aatagaccaaaaatggatatcagacaagaaagttttgatgaaagtcagaaagatgctcct
ttacagtttgtaacaccgaaaattccttcaccaggaagaccacagaagacacaaggtcaa
caacaagattcctcaaggacaatggcagctaagatgtttcaagacagcaataattcagag
tttgctgatatgtggaaagaattacaaaaaatttcaccatcagataatactttactgaac
caggcagctatggctttgaataaactgccagatgacccagcattatctcctaagatagcg
ccaacttccttcaatgtacagagtttgtttgatgaagctaacaagtctaacacagcagaa
ttaacatccaaattaaaagacttaagtgtgttcaaagatagtaatatggaggacggtgtg
ctggtttgttctttaaagaaatctgatcaagacaaagaggatggtagtgctgctttgaag
caaatgttgaatattgactcagaagacagtgaaaagttacctccgacaaaagaggttccc
tcatatgggagacaagtttctgtacaagaactgtttgatggtgtaaaacagaagagttca
agtgaaaatgtacaatcacctagttctaaccagtttcatcaagctcaggaccagcaatat
ccagccaagagcagtcataaccaaaatcaaccaaatcaatacaataatgtaggacggcag
tctggtaatcaaggtcgaccaaaatctggtggaatgcatcaaaacaaccccaatataaat
gtatctaggaaccctgtaatgcagcttttaggtttctgtaaatcattcaaattatcagat
cccaagtatgagttcaacagacagatacagagtggtgggtatacttgtgtgatcaattta
agtaatggtgccagattccaaggagctaccaccccaacccaggaggctgctgcagagagt
gcagcaagtatagcactgcatcaattaggagcaactatccaaccgtccactcaatgccac
ccactaatgatgatgcatcagagaataccacctcctgggatgatgccacataggatgcca
ccatctcctagatctcatcagccacaacaaccgttcccatcagcattcagacctgtccag
cctgctggtgtgatgaacatcaggggtcaggggcaacaacagaattaccatggtggtcgg
ggaggaaaccaggggatttacagttggccgcagcaacaggaatatagtagaccaagacaa
catagtgattcactaccgtcaacagtcatatgtcagccgagtgaagaacagtcaccgatc
aaacaatcgtctcaagctaacccatttatacccctacaggtaacaaaacaacagaagact
ccacagaaaaagaaacataaagaagacaatgtaaataacaatatgtcaactccccccaaa
tctgtcccggaaaccagtccgccacagatttcaaaaggagaaaagcaatcacatatacaa
gaaagcagtgaacagaaaactgtacatgaaagtggaagtagaacaaagaagactccacca
aaacaacagactccaaataaacggaaatctagattagcagctaattttagtggaatgaag
tag
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integrated database retrieval system
