Mus caroli (Ryukyu mouse): 110294179
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Entry
110294179 CDS
T05910
Symbol
Kdm2b
Name
(RefSeq) lysine-specific demethylase 2B isoform X4
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
110294179 (Kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mcal03000
]
110294179 (Kdm2b)
04121 Ubiquitin system [BR:
mcal04121
]
110294179 (Kdm2b)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110294179 (Kdm2b)
Enzymes [BR:
mcal01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
110294179 (Kdm2b)
Transcription factors [BR:
mcal03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
110294179 (Kdm2b)
Ubiquitin system [BR:
mcal04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110294179 (Kdm2b)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
110294179 (Kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
110294179 (Kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
JHD
Cupin_8
JmjC
DUF7885
AppA_SCHIC
Motif
Other DBs
NCBI-GeneID:
110294179
NCBI-ProteinID:
XP_021017870
Ensembl:
MGP_CAROLIEiJ_G0027715
UniProt:
A0A6P5PV75
LinkDB
All DBs
Position
5:complement(115892108..116010534)
Genome browser
AA seq
1308 aa
AA seq
DB search
MEAEKDSGRRLRAIDRQRYDENEDLSDVEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKD
FNYEYVQREALRVPLVFRDKDGLGIKMPDPDFTVRDVKLLVGSRRLVDVMDVNTQKGTEM
SMSQFVRYYETPEAQRDKLYNVISLEFSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQ
TEATNALAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNL
ALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILH
SFNVPMQLRIYEIEDRTRVQPKFRYPFYYEMCWYVLERYVYCVTQRSYLTQEYQRELMLI
DAPRKASVDGFSSDSWLDMEEESCEQQPQEEEEEEDKEEEGDGADKTPKPPTDDPTSPTS
TPSEDQDSTGKKPKAPAIRFLKRTLSNESEESVKSTSMPTDDPKTPTGSPATEVSTKWTH
LTEFELKGLKALVEKLESLPENKKCVPEGIEDPQALLEGVKNVLKEHVDDDPSLAITGVP
VVSWPKKTAKNRVVGRPKGKLGPASAVKLAANRTTAGARRRRTRCRKCEACLRTECGECH
FCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMEC
SICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLL
KEQKMNRDNKEGQEPVKRRSECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEK
PQELSGRKRASSLQTSPGSSSHLSPRPPLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKK
RRSWKNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRESDQSRSSSPTAGPSTEGAEGPE
EKKKVKMRRKRRLVNKELSKELSKELNHEIQKTESTLAHESQQPIKSEPESENEEPKRPL
SHCERPHRFSKGLNGTPRELRHSLGPGLRSPPRVMSRPPPSASPPKCIQMERHVIRPPPI
SPPPDSLPLDDGAAHVMHREVWMAVFSYLSHRDLCVCMRVCRTWNRWCCDKRLWTRIDLN
RCKSITPLMLSGIIRRQPVSLDLSWTNISKKQLSWLINRLPGLRDLVLSGCSWIAVSALC
SSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQMDNRSKLRNIVELRLAGLDITDV
SLRLIIRHMPLLSKLQLSYCNHINDQSINLLTAVGTTTRDSLTEVNLSDCNKVTDLCLSF
FKRCGNICHIDLRYCKQVTKEGCEQFIAEMSVSVQFGQVEEKLLQKLS
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagagaaagactctggaagaagattgcgtgcgattgaccgccagagatacgac
gagaacgaagacttgtcggacgtggaggaaattgtcagcgtccgtggcttcagcctggag
gagaagctacgtagccagttataccagggggacttcgtgcatgccatggaaggcaaagat
tttaactatgagtacgtacagagagaagctctcagggttcccctggtttttcgggacaag
gatggactagggatcaagatgccagaccctgatttcacagtccgagacgtcaaactcctg
gtggggagccgccgtttggtggatgtcatggacgtcaacacccagaagggtaccgagatg
agcatgtcccagtttgtgcgctactacgagacaccagaagcacagcgggacaaactgtac
aacgtcatcagcctcgagttcagccatacgaagctggagcatctggtcaagcgtcccact
gtggtggacctggtcgactgggtggacaacatgtggcctcagcatctaaaggaaaagcag
acagaagccaccaatgcccttgcagagatgaagtaccccaaagtgaaaaagtactgtctg
atgagcgtgaagggctgtttcactgacttccacattgactttggaggcacctccgtgtgg
taccatgtgttccgtggtggcaagatcttttggctgatccctccaaccctgcacaacttg
gctttgtatgaggagtgggtactgtctggcaaacagagcgacatctttctgggagaccga
gtggaacgctgccaaagaattgagctgaagcaaggctacacctttttcatcccttctggt
tggatccatgcagtttatacgcccgtggactctctggtgttcggcgggaacatcctgcat
agcttcaacgtgcccatgcagctgcggatctatgagatcgaggacaggacccgggttcag
cccaagttccgttaccccttctactatgagatgtgctggtatgtcttggagagatacgtg
tactgtgtgacccagcgctcctacctcactcaggaataccagagagaattaatgcttatt
gatgctccaagaaaagccagtgtagacggcttttcatccgactcctggctggacatggag
gaggagtcctgcgagcagcagccacaggaggaggaggaggaagaggacaaggaggaggaa
ggggatggtgcagataaaacacccaagccacccactgatgaccccacctcacccaccagc
accccatccgaagaccaggacagcacagggaagaagcctaaagcccctgccatccggttc
ctcaagaggacgttgtccaatgagtcagaggaaagtgtcaagtccacctcgatgcccacg
gacgatcccaagacgcccacgggctccccagccaccgaggtttctaccaagtggactcac
cttactgaatttgaactgaagggcttgaaagccctagttgaaaagctagagtcccttccg
gagaataagaagtgtgtccctgagggaatcgaggacccccaggccctcctggaaggtgta
aagaatgtactgaaagagcatgtggatgatgaccccagcctggccatcaccggggttcct
gtggtcagctggccaaagaaaactgcaaagaaccgggtggtgggtcggcctaagggcaag
ttgggcccggcctcagcggtgaagttggctgccaaccgaacaacagcaggagctcgcagg
cgccggacgcgatgccgcaagtgcgaggcctgcctgcggacggagtgtggagagtgccac
ttttgcaaggacatgaagaagtttggaggtcctgggcgcatgaagcagagctgcatcatg
cggcagtgcattgcgccagtgctgccccacactgccgtgtgccttgtgtgtggcgaggca
gggaaggaagacacagtggaagaggaagaaggcaagtttaacctcatgctcatggaatgc
tccatctgcaacgagatcatccaccctggatgccttaagattaaggaatcagagggtgtg
gtcaacgatgagcttcccaactgctgggagtgtccgaagtgtaaccatgccggcaagacc
gggaaacaaaagcgtggccctggctttaagtatgcctccaacctgcctggctccttgctc
aaggagcagaagatgaaccgtgacaacaaggaagggcaagagcctgtcaagcggagaagt
gagtgtgaagaggctccacgtcggaggtcagacgagcaccccaaaaaggtgcctgcagat
ggcatcctccgccgaaagtctgatgatgtgcacctgaggaggaagcggaaatatgagaag
ccccaagagctgagtggacgcaagcgagcctcgtcgcttcaaacgtcccccggttcctcc
tctcacctctcgccgaggccccctctaggcagcagtctcagcccttggtggagatccagt
ctcacttacttccagcagcagctaaagcctggcaaagaagataagcttttcaggaaaaag
cggcggtcctggaagaacgctgaggatcgtctgtcactggccaacaagccgcttcggcgc
tttaagcaggaaccagaggacgatctgcctgaggcacctcctaagacccgggagagtgat
cagtcacgttccagctcgcccactgctgggcccagcactgagggagctgaaggcccagaa
gagaagaaaaaggtgaagatgcgccggaagcggcgacttgttaacaaggagctgagcaaa
gagctaagcaaggagctcaaccacgagatccaaaagacggagagcaccctggcccacgag
agccagcagcccatcaagtcagagcctgagagcgagaacgaggagcccaagaggccctta
agccactgcgagcgcccccaccgcttcagcaaagggctcaacggcacacctcgggagctg
cggcattcgctgggacctggcctgcgtagcccacctcgcgttatgtcccggcccccgccc
tctgcatccccacccaagtgcatccagatggagcgtcacgtgatccggccaccgcctatc
agccccccacctgactcgctgcccctggatgatggagcagcccatgtcatgcatagggag
gtgtggatggcagtcttcagctacctcagccaccgagacctgtgtgtttgcatgcgggtc
tgcaggacctggaaccgctggtgctgcgataagcggttgtggacccgcatcgacctgaac
cgctgcaagtccatcacacccctgatgctgagcggtatcatccggcgacagcctgtctcc
cttgacctcagctggaccaacatctccaagaagcagctgagttggctcatcaaccggttg
cctgggctccgagacttggtgctgtcgggctgctcatggattgctgtctcggccctctgt
agctccagttgtccattgctccggaccctggatgtccagtgggtagaaggactaaaggat
gcccagatgagggatctcctgtctccacccacagacaacaggccaggtcagatggacaat
cggagcaagctccggaacattgtagagctgcgccttgctggcctggacatcacagatgtc
tccctgcggctcattattcgccatatgcccctgctctcgaagctccaactcagttactgt
aaccacatcaatgaccagtccatcaacctgctcactgcagtcggcaccaccacccgagac
tcgctgacagaggtcaacctatcagactgtaataaggtaactgacctgtgcctgtccttc
ttcaaacgctgtggaaatatctgtcatattgacctgaggtactgcaagcaagtcaccaag
gaaggctgtgagcaattcatagctgaaatgtctgtgagtgtccaatttgggcaagtggaa
gagaaactcctgcaaaaactaagttag
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integrated database retrieval system
