Mus caroli (Ryukyu mouse): 110295228
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Entry
110295228 CDS
T05910
Symbol
Sf3b1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110295228 (Sf3b1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcal03041
]
110295228 (Sf3b1)
03036 Chromosome and associated proteins [BR:
mcal03036
]
110295228 (Sf3b1)
Spliceosome [BR:
mcal03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110295228 (Sf3b1)
Complex B
110295228 (Sf3b1)
Complex C
U2 SnRNP specific factors
110295228 (Sf3b1)
Chromosome and associated proteins [BR:
mcal03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
110295228 (Sf3b1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
TPR_DNAAF5
HEAT_EF3_N
HEAT_MROH2B_C
HEAT_ECM29
TPR_IPO5
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
VPS15-like_hel
Adaptin_N
Phage_T7_Gp15
UNC45-central
TALPID3
Motif
Other DBs
NCBI-GeneID:
110295228
NCBI-ProteinID:
XP_021019400
Ensembl:
MGP_CAROLIEiJ_G0014141
UniProt:
A0A6P5PTC1
LinkDB
All DBs
Position
1:complement(48888767..48929752)
Genome browser
AA seq
1304 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPPKIADREDEYK
KHRRTMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGE
LKVVNGAAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAK
GSETPGATPGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTE
RDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPI
GTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAG
YVPIRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLV
DVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLM
SPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNL
AKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQA
RHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYG
IESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSP
DEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVEL
ANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAF
QEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAV
VMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRL
TPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNT
FGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPE
LNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVY
GFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARK
VRDVYWKIYNSIYIGSQDALIAHYPRIYNDDKNTYIRYELDYIL
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatatcgaagcacagattcgagaaattcaaggc
aagaaggcagctcttgatgaagcccaaggagtgggccttgattccacaggttattatgac
caagaaatttatggtggaagtgatagcagatttgctggctatgtgacatcaattgctgca
actgaacttgaagatgatgacgacgactactcatcatccaccagcttgctcgggcagaag
aagcctggatatcatgcccccgtggcattgcttaatgatataccacagtcaacagaacag
tatgatccatttgctgagcatcgtcctccaaagattgcagatcgggaagatgaatacaaa
aaacataggcggaccatgataatttccccagagcgtcttgatccttttgcagatggaggg
aagacccctgatcctaaaatgaatgctagaacctacatggatgttatgcgagaacaacat
ttgactaaggaagagagagaaattaggcaacaactagcagaaaaagctaaagctggagaa
ctaaaagtcgtcaatggagcagcagcatcccagcctccctcaaaacgaaaacggcgctgg
gatcaaaccgctgaccagactcctggtgccactcccaaaaagctatcaagttgggatcag
gcagagacccctgggcataccccatctttaagatgggatgagacaccgggtcgtgcaaaa
ggaagtgaaacacctggagcaaccccaggctcaaaaatatgggaccctacaccgagtcat
acacctgcgggagctgctactcctgggcgaggcgacacaccaggccatgcaaccccgggc
catggtggtgcaacttccagtgctcgtaaaaacagatgggatgagacccccaaaacagaa
agagatactcctgggcatggaagtggatgggctgagactcctcgaacagatcgaggtgga
gactctattggtgaaacaccaactcctggagcaagtaaaagaaagtctcgttgggatgaa
acgccggctagtcaaatgggtggaagcactcctgttctgactccaggaaaaacaccaatt
ggcacaccagccatgaacatggctacccccactccaggtcacataatgagcatgacgcct
gaacagcttcaggcttggcggtgggagagagaaattgatgaacgaaaccgcccactttct
gatgaagaattagacgctatgttcccagaaggatataaggtacttccccctccagctggt
tatgttcctattcgaactccagctcgaaaactgacagcaactcctacacctttgggtgga
atgactggtttccacatgcaaactgaagacagaactatgaaaagtgtcaatgaccagcca
tctgggaatcttccatttttaaaacctgatgacattcaatactttgataaactattggtt
gatgtagatgaatcaacacttagtccagaagaacaaaaagaaagaaaaataatgaagttg
cttttaaaaattaagaatggtacacctccaatgagaaaggctgccttacgtcagattact
gataaagctcgagaatttggagctggaccactgtttaaccagattcttcctctattgatg
tcccctacacttgaggatcaagagcgacatttacttgtgaaagttattgatagaatattg
tataaacttgatgacttggtgcggccgtatgtgcacaagattcttgtggttatcgagcca
ctgttgattgatgaagattactatgctagagtggaaggccgagagattatttctaatttg
gcaaaggctgctggtctggctactatgatttctaccatgagacctgatatagataacatg
gatgaatatgtccgaaacacaacagctagagcttttgctgtcgtagcctctgccctgggc
atcccttctttattgcctttcttaaaagctgtgtgcaaaagcaagaagtcttggcaagcg
aggcacactggtattaagattgtacaacagatagccattctcatgggctgtgctatcttg
ccacatctcagaagtttagttgaaatcattgaacatggtctcgtggatgagcagcagaaa
gttcggaccatcagtgctctggccattgctgctttggctgaggcagcaactccttatggt
attgagtcttttgattctgtgctcaagcccctatggaagggtatccgccaacatagagga
aagggtctggctgctttcttgaaggctatagggtatcttattcctcttatggatgcagaa
tatgccaactactatactagagaagtgatgttaatcctcattcgagaattccagtctcct
gatgaagaaatgaagaaaattgttttgaaggtggtgaaacagtgttgtggaactgatggt
gtagaagcaaactacattaaaacagagattcttccacctttctttaaacacttttggcaa
cacagaatggctttggatagaagaaattaccgacagttagtcgacacaactgtggagttg
gcaaacaaagtgggtgcagcagagatcatatctaggattgttgatgatctgaaggacgaa
gctgagcagtacaggaaaatggtgatggagacaattgagaaaattatgggcaatctcggt
gcagcagatattgaccataaacttgaggagcagctgattgatggtattctctatgctttc
caagaacagaccacagaggactcagtaatgttgaatggctttggcacagtagttaatgct
cttggcaaacgagtcaaaccatacttgcctcagatctgtggtacagttttatggcgttta
aataacaaatcagcaaaagttaggcaacaagccgctgacttgatttctcgaactgctgtt
gttatgaagacttgtcaagaggaaaaactgatggggcacttgggtgtggtgctgtatgag
tatttgggtgaagagtaccctgaagtactgggcagcattctcggagcactgaaggctatc
gtaaacgtaataggtatgcataagatgacaccaccaattaaagatctcctgcctagactc
acccccattttaaagaacagacatgaaaaagtacaagagaattgtattgatcttgttgga
cgcattgctgacaggggagctgaatatgtatctgcaagggaatggatgaggatttgcttt
gagcttttagagctcttaaaagctcacaaaaaagctattcgaagagctactgtcaataca
tttggttatatcgcaaaggctattggccctcacgatgtattggctacacttttaaacaac
ctcaaagttcaggaaaggcagaacagggtttgtacgactgtagcaatagccattgttgct
gaaacatgctcccccttcacagtactccctgccttaatgaatgaatacagagttcctgaa
cttaatgtgcaaaatggagtgttaaaatcactctccttcttgtttgagtatatcggcgaa
atggggaaggactacatctatgctgtgacgcctttacttgaggatgcgttaatggacagg
gaccttgttcacagacagacagctagtgcagtggtacagcacatgtcacttggtgtttat
ggatttggctgtgaggattctctgaatcacttactgaactatgtgtggcctaatgtgttt
gagacatctccccatgtaatccaggccgttatgggagctctggagggcctgagggttgct
attggaccatgcagaatgttgcagtattgcttacagggtctgttccacccagctcggaaa
gtcagagatgtgtattggaaaatttacaactccatctacattggctcccaggatgctctc
atagcacattacccacgaatctacaatgatgataagaacacctatattcgttacgaactt
gactatatcttgtaa
DBGET
integrated database retrieval system
