Mus caroli (Ryukyu mouse): 110300884
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Entry
110300884 CDS
T05910
Symbol
Cnot1
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110300884 (Cnot1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110300884 (Cnot1)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110300884 (Cnot1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110300884 (Cnot1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
CNOT1_HEAT
DUF3819
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
110300884
NCBI-ProteinID:
XP_021026771
Ensembl:
MGP_CAROLIEiJ_G0031430
UniProt:
A0A6P5QA68
LinkDB
All DBs
Position
8:complement(87200075..87288528)
Genome browser
AA seq
2256 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLSYAIDNPLHYQKVSIFLSLVRLXXYLFLP
FIFDDGSFSAQFIKQKLPDLLRSYIDADVSGNQEGGFQDIAIEVLHLLLSHLLFGQKGAF
GVGQEQIDAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRILPDSGGVAKTMMESSLA
DFMQEVGYGFCASIEECRNIIMQFGVREVTAAQVARVLGMMARTHSGLTDGIPLQSISAP
GSGIWSDGKDKSEGAQAHTWNVEVLIDVLKELNPSLNFKEVTYELDHPGFQIRDSKGLHN
VVYGIQRGLGMEVFPVDFIYRPWKHAEGQLSFIQHSLINPEVFCFADYPCHTVATDILKA
PPEDDNREIATWKSLDLIESLLRLAEVGQYEQVKQLFSFPIKHCPDMLVLALLQINTSWH
TLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMHAMAEWYMRGEQYDQAK
LSRILDVAQDLKALSMLLNGTPFAFVIDLAALASRREYLKLDKWLTDKIREHGEPFIQAC
MTFLKRRCPSILGGLAPEKDQPKSAQLPAETLATMLACLQACAGSVSQELSETILTMVAN
CSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQIDPLAGMASLSIGGSAAPHTQSMQGF
PPNLGSAFSTPQSPAKAFPPLSTPNQTTAFSGIGGLSSQLPVGGLGTGSLTGIGTGALGL
PAVNNDPFVQRKLGTSGLNQPTFQQTDLSQVWPEANQHFSKEIDDEANSYFQRIYNHPPH
PTMSVDEVLEMLQRFKDSTIKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGII
EKGLVTYMALGLALRYVLEALRKPFGSKMYYFGIAALDRFKNRLKDYPQYCQHLASISHF
MQFPHHLQEYIEYGQQSRDPPVKMQGSITTPGSIALAQAQAQAQVPAKAPLAGQVNTMVT
TSTTTTVAKTVTVTKPTGVSFKKDVPPSINTTNIDTLLVATDQTERIVEPPENIQEKIAF
IFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEF
NKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLL
LEAYVKGQQELLYVVPFVAKVLESSIRSLVFRPPNPWTMAIMNVLAELHQEHDLKLNLKF
EIEVLCKNLALDINELKPGNLLKDKDRLKNLDEQLSAPKKDVKQPEELPAITTTTTSTTP
ATSTTCTATVPPQPQYSYHDINVYSLAGLAPHITLNPTTASPQQREMMDQAAAQLAQDNC
ELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLK
VGGVDPKQLAVYEEFARNVPGFLPTNDLSQPTGFLAQPMKQAWATDDVAQIYDKCITELE
QHLHAIPPTLAMNPQAQALRSLLEVVVLSRNSRDAIAALGLLQKAVEGLLDATSGADADL
LLRYRECHLLVLKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ
QYDLHLAQSMENGLNYMAVAFAMQLVKILLVDERSVAHITEADLFHTIETLMRINAHSRG
NAPEGLPQLMEVVRSNYEAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWV
NLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHN
PAANPTMIRAKCYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHDV
RQSEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLE
LISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLL
VLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINI
APRILTNFTGVMPPQFKKDLDSYLKTRSPVTFLSDLRSNLQVSNEPGNRYNLQLINALVL
YVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSH
THYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNH
EFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
6771 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctctcgctggccttgtctcaaatcagctacctggtggacaattta
accaagaaaaactaccgagccagccagcaggaaatacagcatattgtgaatcggcacggt
cctgaggcagacaggcatttattacgctgcctattttcacatgtggatttcagtggcgat
ggtaaaagcagtggcaaagatttccatcagacacagtttctgattcaggagtgtgcctcg
ctgattacaaagccaaattttatctcaacattgtcatatgccattgataatccattgcac
taccagaaggttagtatatttttatctctagtaagattgtgataatatctatttctccct
ttcatttttgacgacgggtctttctctgcccagtttatcaaacagaagcttccagatctt
ctgcgttcttacattgacgcagacgtcagtggaaatcaagaaggtggcttccaagatata
gcaatagaggtcctacacctcctactctcccatctcctctttgggcagaagggagccttt
ggagttggacaggaacagatagacgcttttcttaagacactacgcagagattttccccaa
gaacgctgtcctgtggtgcttgcaccacttttataccctgaaaaacgggacattctaatg
gacaggattttgcctgattctggaggggtagctaaaaccatgatggagagctcgctagct
gacttcatgcaggaagtgggctatggtttttgtgcaagtattgaagaatgtcgcaatata
atcatgcagtttggtgttcgggaggtcacagctgcccaggttgccagggttttgggaatg
atggctcggactcattcaggattaacagacggaattccattacagagcatctctgctcct
ggcagtgggatctggagtgacggaaaagataaaagcgagggggcacaagcacacacgtgg
aatgttgaggttttgattgatgttcttaaagagctgaacccgagtttgaatttcaaggaa
gtaacttatgaactggaccatcctggatttcagattcgtgacagcaaaggacttcacaat
gtggtttatggcattcaaaggggtctgggcatggaagtgtttccagtagattttatatat
aggccttggaaacatgcagaaggccagctctccttcatccagcattccctgataaaccca
gaggtcttctgttttgctgactacccctgtcacactgttgccactgatattttgaaagca
ccaccagaggatgacaatcgagaaattgccacatggaaaagcttggatttgattgagtct
ctgctgaggcttgcagaggtcgggcagtatgagcaagtgaagcaactcttcagcttcccc
atcaagcactgcccggacatgctggtgctggccttactccagatcaacacttcctggcac
accctacgccatgaactcatctctactttgatgccaattttccttggaaaccatcctaac
tctgccattattttgcactatgcatggcatgggcaggggcagtctccatcaattcgccaa
cttataatgcatgcaatggcagaatggtacatgagaggggagcagtatgatcaggccaaa
ttgtctcgaatacttgacgtggcccaggacttgaaggccctgtcgatgctgctgaatggc
actccatttgcctttgtcattgaccttgctgcactcgcttcccggcgggaatacctcaaa
cttgacaagtggctaacggataagataagagagcatggggagccttttatacaagcatgt
atgacttttttaaagagaaggtgcccttctattttgggtggacttgccccagagaaagat
cagcccaaaagtgctcaacttcccgctgaaactctggcaacaatgttggcttgtctgcag
gcttgtgcagggagtgtttctcaagagttatcagagaccatcctcaccatggtagccaat
tgcagtaatgtaatgaataaggccagacagccaccacctggagttatgccaaaaggtcgc
cctcctagtgctagcagcttagatgccatttctcctgttcagattgaccctcttgctgga
atggcatctcttagtataggtggttcagctgcccctcacacccagagcatgcagggtttt
cctccaaatttgggttctgcgttcagtacccctcagtcaccagcaaaagcatttccacca
ctttcaaccccaaatcaaacaacggccttcagtggtattggaggactctcctcacagctt
ccagtaggtggtcttggcacaggaagcctgactggcataggaactggggcccttggactt
cctgcagtgaacaatgatccttttgtacagaggaaactgggcacctctggactcaaccag
cctacattccagcagaccgacttgtctcaggtgtggccagaggcaaatcagcactttagt
aaagaaattgatgatgaagcaaacagttatttccagcgaatttataatcacccaccacat
ccaaccatgtctgttgatgaggtattagaaatgctacagagatttaaagactctacaata
aaaagggaacgagaagtatttaactgtatgctgaggaacttgtttgaagaataccggttt
ttcccccagtaccctgataaagaattacatataacagcctgcttgttcggtggtataatt
gaaaaaggactggtcacttacatggcattgggtctggccctgcgatatgttcttgaagcc
ttacggaagccttttggatccaaaatgtattattttggtattgctgcactagatagattt
aaaaatagattgaaggactatcctcagtactgtcagcacctggcgtccatcagccacttt
atgcagttcccacatcatttgcaggagtacattgagtacggacagcagtctcgagatcct
cctgtgaaaatgcagggctctatcactactcctggaagtattgcactggctcaggcccag
gctcaggcccaggttccagcaaaagctcctcttgccggtcaggttaacacaatggtaacc
acctcaacaaccaccactgttgctaaaacagttacagtcaccaagccaacgggagtcagc
tttaagaaagatgtgccaccttctataaatacaacaaatatcgatacattgcttgtggcc
acagatcaaactgagaggattgtggagcccccagaaaatattcaagagaaaattgctttt
attttcaacaatctctcacagtcaaatatgacacagaaggttgaagagcttaaagaaact
gtgaaggaagaatttatgccttgggtttcccagtatctggttatgaaaagagtcagtatt
gagccaaactttcatagcctgtattcaaactttcttgatacattgaagaatcctgaattt
aacaagatggttctgaatgagacctacagaaacattaaagtgctgctgacttctgataaa
gctgcggccaatttctcagatcgttctttgctgaagaacttgggacattggttaggaatg
atcacattagctaaaaataaacccatcttacacacggacttggatgtgaaatctttgctg
ttagaggcttacgttaaagggcagcaagagttgctctatgtggtgccctttgttgccaaa
gttctagagtccagcattcgcagcctggtttttagaccaccaaacccctggacaatggca
attatgaatgtattggctgagctgcatcaggagcatgacttaaagttaaacctgaagttt
gagattgaggtgctctgtaagaaccttgcattagacatcaatgagctcaaacctggaaac
ctgctgaaagataaagatcgtctgaagaacttagatgagcaactctctgctccaaagaaa
gatgtcaagcagcccgaagagcttcctgccatcacaacaacaacaacttctacaacacca
gctaccagtactacgtgtacagccacagttccaccacagccacagtacagctaccacgac
atcaatgtctactctctagcaggcctggcacctcatattactctaaaccctacaactgca
tccccacagcaaagggaaatgatggaccaggctgctgctcagttagctcaggacaattgt
gaattagcttgttgttttattcagaaaactgcagtggagaaagcaggccctgagatggac
aagagattggcaactgaatttgagctgaggaagcatgcccggcaagaaggacgtaggtac
tgtgatcctgtggtcttaacctaccaagccgagcggatgccggagcagatcaggctgaaa
gttggtggtgtggacccaaagcagctagccgtctatgaagagtttgcacgaaatgtgcct
ggcttcttacctacaaatgacttaagtcagcctacagggtttttagctcagcccatgaag
caagcttgggcaactgatgatgtagcgcagatttatgataagtgtattacagaactggag
cagcacctacacgccattccaccaactttggccatgaatcctcaagcccaggctctccga
agtcttttagaggttgtagtgttgtctcggaattctcgggatgcgatagctgctcttgga
ttactacagaaggctgtagaaggcttattagatgccacaagtggtgctgatgctgacttg
ctgctgcgatacagggaatgccacctgttggtactgaaagctctgcaggatggcagggca
tatggatctccatggtgcaacaaacagatcacaaggtgcctaattgaatgtcgagatgaa
tataaatataatgtggaggctgtggaattgttaattcgaaatcatttggttaacatgcag
cagtatgatcttcatcttgctcagtcgatggagaatggcttgaactacatggccgtggcg
tttgctatgcaactggtaaaaattctgctggtggatgaaaggagtgttgcccatattact
gaggcagatctgttccataccattgaaaccctcatgagaattaatgctcattccagaggc
aatgctccagaagggttgccccagctgatggaagtggtgagatccaactatgaagcaatg
attgatcgtgctcatggaggccctaactttatgatgcattctgggatctctcaagcctca
gaatatgatgaccctccaggcctgagggagaaggcagagtatcttctgagggaatgggtg
aatctctaccattcagcagcagctggccgcgacagtaccaaagcattctctgcgtttgtt
ggacagatgcaccaacaaggaatacttaaaactgatgacctcataacaaggttttttcgt
ctttgcactgaaatgtgtgttgaaatcagttaccgtgctcaggcggagcagcagcacaat
cctgcggctaaccctaccatgatccgggccaagtgctaccacaacctggatgcctttgtc
cgcctcattgcactgttagtgaagcactctggggaggccaccaacactgtcacaaagatc
aacctgctcaataaggttctcggtatagtagtgggagttctcctacaggatcatgatgtt
cggcagagtgaatttcagcaacttccgtaccataggatttttatcatgctgctgttggag
ctcaatgcacctgagcatgtgttggaaaccattaatttccagactcttactgctttctgc
aatacattccacatcttgagacctactaaagctcctggctttgtatatgcttggctcgaa
ttgatttcccatcggatctttattgcaagaatgctggcacatacgccacagcagaagggg
tggcctatgtatgctcagctgttgattgatttattcaaatatttagcacctttccttaga
aatgtggaactcactaaacctatgcaaatcctctacaagggtactctaagagtgctgcta
gttcttttgcatgatttcccagagttcctttgtgattaccattatgggttctgtgatgtg
atccctcctaattgtatccagttaagaaatttgatcctgagtgccttcccaaggaatatg
aggctcccagacccattcactcctaatctgaaggtggacatgttaagcgaaattaacatc
gcacctcggatcctcaccaatttcactggagtgatgccgcctcagttcaaaaaggatttg
gattcctatcttaaaactcggtcgccggtcactttcctgtctgatctgcgtagtaaccta
caggtatctaatgagcctgggaatcgctacaacctccagcttatcaatgcattggtgctc
tacgtagggactcaggctatcgcacacatccacaacaagggcagcacgccgtcaatgagc
accatcacccactcagcacacatggacatcttccagaacctggctgtggacctagacact
gagggccgatatctcttcttaaatgcaattgcgaaccagcttcggtacccaaacagccac
actcactacttcagctgcaccatgttgtacctttttgctgaggcgaacactgaggcaatc
caggaacagattacaagggttctcttggaacggttgattgtaaataggccacatccttgg
ggtcttcttatcaccttcattgagctgattaaaaacccagcatttaagttctggaaccat
gaatttgtacactgtgccccagagattgaaaagttatttcagtctgtcgcacagtgctgc
atgggacagaagcaggctcagcaagtgatggaggggaccggtgccagttag
DBGET
integrated database retrieval system
