Mus caroli (Ryukyu mouse): 110302880
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Entry
110302880 CDS
T05910
Symbol
Pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110302880 (Pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcal03019
]
110302880 (Pan2)
Enzymes [BR:
mcal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110302880 (Pan2)
Messenger RNA biogenesis [BR:
mcal03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110302880 (Pan2)
mRNA degradation factors
3'-5' decay
Pan complex
110302880 (Pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
VPS11_N
Motif
Other DBs
NCBI-GeneID:
110302880
NCBI-ProteinID:
XP_021029322
Ensembl:
MGP_CAROLIEiJ_G0015930
UniProt:
A0A6P5QM51
LinkDB
All DBs
Position
10:120662497..120681625
Genome browser
AA seq
1206 aa
AA seq
DB search
MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVQLDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVNGGDDIR
QIQSLENGILFLTKNNLKYMARGGLIIFDYLLDENEDMHSVLLTDNSTLLVGGLQNHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRSFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDALLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNFSQITESPTGREE
EPLHIVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPV
RCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSD
EASGKGSLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSSFCSSGDSIIGQLFSCEM
ENCSLCRCGSETVRASSTLLFTLSYPEGSICDKTGKNYDFAQVLKRSICLEQNTQAWCDN
CEKYQPTIQTRNIRHLPDILVINCEVNSSKEADFWRLQAEVAFKIAVKKFGGEIKSKEFA
LADRKELRSPEGFLCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWADEHELSSLGAPSQW
GPARAEEELGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDF
LIEPIDKYEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKT
HTTFIPLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQ
GPNEGIPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIG
VKFVGHGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDS
IEDARTALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPESQTSPKNAAVF
SSVLAL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggatccgggactggccgaattttccccagctatgcattctacc
ctggacccagtcctggatgcccacctgaatccgagtttgctacagaatgtgcagctagac
ccagagggagtggccttggaggctcttcctgtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagcgtggtggctgaagtgggagtgcctgtgtctgtctcccac
tttgatttacatgaggagatgctgtgggtggggagccatgggggccacgccacctccttc
ttcggcccagctctggagcgctactcatcctttcaggtcaatggcggtgacgacattcgg
caaatccagagcctggagaacggtatcctcttcctcaccaagaacaacctcaagtacatg
gcccgtggggggctcattatatttgactatttgctggatgagaacgaagatatgcacagt
gtcctcctgacagacaatagcactctgcttgtcggcggactgcagaaccacatactggag
attgacctgaacactgtccaggagactcagaagtatgcagtcgagacacccggagtcacc
atcatgagacagacaaatcgtttcttcttctgtggccacacatctggcaaggtttccctg
cgagacctccgtagttttaaagtggagcatgaatttgatgccttctcagggagtctgtca
gattttgatgttcatggcaacctgctggctgcctgcggcttctccagtcgccttaccggc
ctggcctgtgaccgtttcctcaaagtatacgacctgcgcatgatgcgtgccatcacacct
cttcaagtgcacgtggatccggccttcttacgattcatccccacatatacttcccgcctt
gctatcatctcccagtctggtcaatgccagttttgtgaacccacaggcctggccaaccca
gccgacatcttccatgtgaatcccgtgggacctttgctaatgacgtttgatgtgtcagcc
agcaagcaggccctggcctttggggattccgagggctgtgtgcatctctggactgattcc
cctgagccgtccttcaacccctactcccgagagactgagtttgccctgccctgtcttgtg
gactccttgccgcctctggactggagtcaggatctgctgccgctttccctcattcccgtg
ccacttaccactgatgccctgctctccgactggcctgctgccaactctgctcccgctccc
aggcgagcaccacctgtggatgcagaaattcttcgaaccatgaagaaagtgggcttcatt
ggctatgctcccaaccctcgcaccaggctgcgtaaccagattccctatcgactaaaggag
tcagaccatgaatttgacaacttcagccaaatcacggagtcaccgacagggcgagaagag
gagcctctccacatagtttctaagaaataccggaaggtaaccatcaaatattccaagcta
ggcctagaagactttgacttcaagcactacaataagactctgtttgctgggttagagcct
cacatccccaatgcctactgcaactgcatgatccaggtgctctatttcttggagcctgtt
cgctgtctgatccagaaccacctttgccaaaaggaattctgcctggcgtgcgagctcggc
ttcctcttccacatgctagacctctctcgtggtgatccttgtcagggcagtaatttcctc
cgagcttttcggaccatccctgaggcctcagctctgggtctcatccttgctgactcagat
gaggcttcaggcaagggcagtctggcccggcttatccagaggtggaaccgcttcatcctc
actcagctacatcaggatatgcaggagctggaagtgccccaggcttatcgaggtgctgga
ggcagcagtttctgctcatcaggagactccatcattgggcagctgttcagttgtgagatg
gagaactgcagtctttgccgctgcggcagcgagactgtgcgggcctcgtccaccctactc
ttcacactctcctaccctgagggtagcatctgtgataaaaccgggaagaactatgacttt
gctcaggtgctgaagcgaagtatctgcctggagcagaacacacaggcctggtgtgacaac
tgtgagaagtaccagcccacaattcagacccgaaacatccgacatctgccagatattctt
gtcattaactgtgaagtgaatagctcaaaagaggctgatttctggagactgcaagctgag
gttgccttcaaaatagcggtgaaaaagttcggcggggaaataaagagcaaagagtttgct
ttagctgatcggaaggaactgaggagtccagagggttttctgtgttcctccatcgaggag
ctgaagaatgtctggcttccattttctatccgcatgaagatgaccaagaacaaagggctg
gatgtttgcaactgggctgacgagcatgagcttagcagcctgggtgccccctcgcagtgg
ggtccggccagggcagaggaggagcttggtgtctatgtatatgacctgatggctactgtg
gtacacatcctggactcacgaacaggcggcagcttggtggctcacatcaaagtcggtgag
acctaccaccagcgcaaggagggcgtgactcatcagcagtggtatctcttcaatgacttc
ctcattgaaccaattgataagtatgaagccgtgcagtttgacatgaattggaaagtacct
gctatcctgtattatgtcaaaaggaatctcaattccagatacaatctgaacatcaagaac
cccattgaggccagtgtgctgctggcagaagcctcgctggcacggaagcaacggaaaaca
cacacgacctttattccattgatgctgaatgagatgccacaggtcggggacctggtgggc
ctggatgctgagtttgtcactcttaatgaggaagaagcagagttacgcagtgatggtacc
aagtccaccattaagccaagccagatgtcagtcgcaaggatcacctgtgttcggggccaa
gggcctaacgagggcatccccttcattgatgactacatctccacgcaggagcaggtagta
gattacttgactcagtactcggggataaagccaggagaccttgatgccaaaatctcctca
aagcacctcacaaccctcaagtctacctacttaaagcttcgctttctcattgatattgga
gtcaagtttgtgggtcatggtctgcagaaggacttccgggtcatcaacctcatggtgccc
aaggaccaagttcttgacacagtctacctgttccacatgccccggaaacgaatgatttcc
ctacgattcctggcctggtattttctagacctgaagattcaaggtgagacccatgacagc
attgaggatgcccgcacagcccttcaactctaccggaagtatctggagctgagcaagaac
ggcaccgagcccgagtccttccacaaggtgctcaagggtctctatgagaagggccgaaag
atggactggaaggtgcctgagcctgaaagccagacaagtcccaagaacgcagctgtcttc
tcctcagtgctggcactgtga
DBGET
integrated database retrieval system
