Mus caroli (Ryukyu mouse): 110304292
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Entry
110304292 CDS
T05910
Symbol
Polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
mcal
Mus caroli (Ryukyu mouse)
Pathway
mcal03020
RNA polymerase
mcal03420
Nucleotide excision repair
mcal05016
Huntington disease
Brite
KEGG Orthology (KO) [BR:
mcal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110304292 (Polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
110304292 (Polr2a)
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
110304292 (Polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mcal03021
]
110304292 (Polr2a)
03400 DNA repair and recombination proteins [BR:
mcal03400
]
110304292 (Polr2a)
Enzymes [BR:
mcal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110304292 (Polr2a)
Transcription machinery [BR:
mcal03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
110304292 (Polr2a)
DNA repair and recombination proteins [BR:
mcal03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
110304292 (Polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
110304292
NCBI-ProteinID:
XP_021031224
Ensembl:
MGP_CAROLIEiJ_G0016587
UniProt:
A0A6P5QDQ8
LinkDB
All DBs
Position
11:complement(64474159..64500218)
Genome browser
AA seq
1970 aa
AA seq
DB search
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDP
RQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVD
SNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKG
HGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEP
RYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAA
HVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVD
FSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYII
RDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS
TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD
TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI
NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM
GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA
HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN
ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA
MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES
VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR
EDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKL
VIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI
AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLT
VFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMP
DFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR
IMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI
IITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALER
ELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLM
EAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTG
MFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPG
YSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSP
SYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPT
SPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPASPKY
SPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTS
PKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN
NT seq
5913 nt
NT seq
+upstream
nt +downstream
nt
atgcacgggggtggccccccctccggggacagcgcatgcccgctgcgcaccatcaagaga
gtgcagttcggagtcctgagtccggatgagttgaagcggatgtctgtgacagagggtggt
atcaaatacccagagacaaccgagggaggtcgccccaaacttgggggactaatggatcca
cggcagggggtgattgagcggactggccgctgccaaacatgtgcaggaaacatgaccgag
tgtcctggccactttggccacatcgaactggccaagcctgtgtttcatgtgggcttcctg
gtgaagacaatgaaggttttgcgctgtgtctgcttcttctgctccaaactgcttgtagat
tctaataacccgaagattaaggacatcctggccaaatctaaggggcagccaaagaaacgg
cttacgcatgtctatgacctgtgcaagggcaaaaacatctgtgaaggtggagaggagatg
gacaacaagtttggtgtggagcagccggagggtgatgaggatctgaccaaagagaagggc
catggcggctgtgggcggtatcaaccccggatccggcgctctggcctggagttgtatgct
gaatggaagcatgttaatgaggactctcaggagaaaaagatcctgctgagtccagagcga
gtgcatgagatcttcaaacgcatctcagatgaggagtgttttgtgctgggcatggagcct
cgctatgcccggcctgagtggatgattgtcacagtgttgcctgtgcctcctctctctgtg
agacctgcagtggtgatgcagggttctgctcgaaaccaggatgatctgactcacaagctg
gctgacattgtgaagatcaacaatcagctgcggcggaacgagcagaatggtgcagctgcc
catgtcatagcagaagatgtaaaacttctccagttccatgtggccaccatggtggacaat
gaactgcccggcttaccccgtgccatgcagaagtctggccgtcccctcaagtccctgaag
caacggttgaagggcaaagaaggacgggttcgagggaatctaatgggcaagcgagtggac
ttctcagcccgcactgtcatcacccctgaccctaacctatccattgaccaagtgggtgtg
ccccgctccattgctgccaacatgacctttgcagagattgtcacacccttcaatattgac
agacttcaggaattagtacgcaggggaaatagccagtatccaggagccaagtacatcatc
cgcgacaatggtgatcgaattgacttgcgtttccatcctaagcccagcgaccttcatctg
cagactggctataaggtggaacggcacatgtgtgatggggacattgttatcttcaatcgt
cagccaactttgcacaaaatgtccatgatggggcatcgggtccgcatcctcccctggtct
acttttcggttgaatcttagtgtgacaactccatacaatgcagactttgatggagatgag
atgaatttacatctgccacagtctctggaaacacgggcagagatccaagagttggccatg
gtgcctcgaatgattgtcaccccccagagcaatcgacccgtcatgggtattgtacaagac
acactcacggcagtacgcaaattcactaagagagatgtcttcctggagcggggtgaagtc
atgaacctcttaatgtttctgtccacgtgggatggcaaggtcccacagccagctatcctc
aagccccggcccctgtggacaggcaagcagatcttctccctcatcatacctggacacatc
aattgtatccgtacccacagcacccatcctgacgatgaagacagtggcccttacaagcac
atctctcctggggacaccaaagttgtagtggagaatggggagcttatcatgggcatcctt
tgtaagaagtccctgggcacctcagcaggctcgctggtccatatctcctacctagagatg
gggcatgacatcacccgcctcttctactccaacattcagactgtcattaacaactggctt
ctcatcgagggtcataccattggtattggagactccattgcagattcaaagacttaccag
gacattcagaacactattaagaaagctaaacaagatgtaatagaggtcattgagaaggct
cataacaacgagctggaacctaccccaggaaacacattgcgccagacatttgagaatcaa
gtgaatcgtattctcaatgatgctcgagacaaaactggctcctctgcacagaaatccctc
tctgaatataacaacttcaagtctatggtggtgtctggagccaagggttccaagatcaac
atctcccaggtcattgctgttgtcgggcagcagaatgtagagggcaagcggatcccattt
ggattcaagcatcggactcttcctcactttatcaaggatgattatggtcctgagagccga
ggctttgtagaaaattcatacttggctggtctcacacccactgagttcttcttccatgcc
atgggaggacgagaaggtctcattgacacggctgttaagactgctgagactgggtatatt
cagcgaaggctgataaagtccatggagtcggtgatggtgaaatatgatgcaactgtgagg
aactccatcaaccaggtggtacaactgcgctatggagaggacggcctggcaggggagagc
gttgagttccagaatctggctacactcaaaccttctaataaagcttttgagaagaagttc
cgttttgattataccaatgagagggccctgcggcgcactcttcaggaggacctggtaaag
gatgtgctgagcaatgcccacatacagaatgagctggaacgggaatttgaacggatgcgt
gaagatcgggaagtgctcagggtcatcttcccaactggtgacagcaaggtggtcctccct
tgtaaccttctgcggatgatctggaatgctcagaaaatcttccacatcaaccctcgcctt
ccctccgacctgcatcccatcaaagtggtagagggagtcaaagaattgagcaagaagttg
gtaattgtgaatggagatgacccactaagtcggcaggcacaggagaatgccacattgctc
ttcaacatccacctaagatccacactctgctctcgccgaatggctgaggagtttcggctg
agtggagaggcctttgactggctgcttggggaaatagagtccaagttcaaccaagccatt
gcccatcctggagaaatggtgggagctctggctgctcagtctcttggagaacctgccact
cagatgaccctgaacactttccactatgccggtgtatctgccaagaatgtgactctgggt
gtgcctcgacttaaggagcttatcaacatttccaagaagccaaagactccttcactcact
gtcttcctgttaggtcaatctgcacgagatgctgaaagagccaaggacattctttgccgc
ttggaacatacaacattgaggaaggtgactgccaatacagccatctactatgaccctaac
ccccagagcacagtggtggcagaagatcaggagtgggtgaatgtgtactatgagatgcct
gactttgatgtggcccggatatctccctggctgctgcgtgtggagctcgaccgaaagcac
atgactgaccggaagcttaccatggaacagattgctgaaaaaatcaatgcgggttttggt
gatgatttgaattgtatcttcaacgatgataatgcagagaagctggtccttcgaatccgc
atcatgaacagtgatgaaaacaagatgcaagaggaggaagaggtggtggataaaatggat
gatgacgtcttcctgcggtgcattgagtccaacatgctgacagatatgactctgcagggt
atcgagcagatcagcaaggtgtacatgcacttacctcagacagacaacaagaagaagatc
atcatcacagaggatggggagttcaaggccctgcaggaatggatcttagagacggatggt
gtgagcctgatgcgggtgctgagtgagaaggatgtagaccctgtgcgcaccacgtccaat
gatattgtggagatcttcacggtactgggcattgaggctgtgcggaaggctctggagcga
gaactgtaccatgtcatctcctttgatggttcttatgtcaattatcgacatttggctctc
ctgtgtgacactatgacatgccgtggccacttgatggccatcactcgtcatggggtcaac
cgccaggacactggaccgctcatgaaatgctcctttgaggaaacggtggatgtccttatg
gaagcagcagcacacggggagagtgaccccatgaagggagtctctgagaatattatgctg
ggccagctcgctccagctggtactggctgttttgacctcctgcttgatgctgagaagtgc
aaatacggcatggaaatccccaccaatatccccggcctgggagctgccggacctaccggc
atgttctttggctctgcacccagtccgatgggaggaatatctcctgcaatgacaccctgg
aaccagggtgcaactcccgcctatggtgcctggtccccgagtgttgggagcgggatgacc
ccaggagcggccggcttctctcccagtgctgcatctgatgccagtggcttcagcccaggt
tactcccctgcatggtctcctacaccaggctctccgggctcccctggaccctcaagccca
tacatcccctcaccaggcggtgctatgtctcccagctactcaccgacatcaccagcctat
gagccgcgctcccctgggggctatacacctcagagcccctcctactcccctacttcaccg
tcctactccccaacctctccatcttactctccaaccagtcccaactacagccctacctct
cctagctactcgcccacctcccctagctattctccaacctctccttcctactcccccacc
tctccttcctactccccaacctctccttcctactcccccacctctccgagctattctcca
acatcacctagctattctccaacttctcccagctactcgccgacatctcccagctactcc
ccaacttctcccagctactcgccgacttcaccaagctattctcccacctcccccagctac
tcaccaacatctcccagctactcaccaacttctccaagctactcaccaacttctccaagc
tactcacccaccagccctaactattctccaactagtcccaactataccccgacatcaccc
agctacagcccaacctcacccagctactcacctacaagtcccaactatacacccaccagc
cccaattacagcccaacctctccaagctattccccaacctcacccagttattcccccacc
tcgccaagctactccccctccagcccacgatatacaccacagtctccaacctacacaccg
agctcgccaagctacagtcccagctcgccaagctacagccccacttcacccaagtacacc
ccaactagtccttcctacagtcccagctcaccagagtacaccccggcttctcccaaatac
tcacctacaagccctaaatattcacccacttcccccaagtattctcctaccagcccaact
tactcacctaccaccccaaaatattccccaacctccccgacatactcaccaacctctcca
gtctataccccgacctctcccaagtactccccgactagccctacctactcacccacttct
cccaagtactcacccaccagccccacctactcacccacctctcccaagggttccacctac
tctcccacttctcctggctactcccccactagccccacctacagcctcaccagcccagcc
atcagcccagatgacagcgatgaggagaactga
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integrated database retrieval system
