Montipora capricornis (leaf plate montipora): 138022249
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Entry
138022249 CDS
T10557
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcaz Montipora capricornis (leaf plate montipora)
Pathway
mcaz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcaz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138022249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcaz03019
]
138022249
Messenger RNA biogenesis [BR:
mcaz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138022249
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
138022249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
NOT1_connector
DUF3819
CNOT1_HEAT
CNOT1_1st
GPAT_C
Motif
Other DBs
NCBI-GeneID:
138022249
NCBI-ProteinID:
XP_068725431
LinkDB
All DBs
Position
10:69993938..70046891
Genome browser
AA seq
2458 aa
AA seq
DB search
MSACVDSLSLALGQISFAVNDLTKKNYKATLKEIHELIEKHGYEAERHLFRCLFSFIDFT
GDGKNNGKDFLQCQFLIQECQMLVSKPNFSSILCFAIESPEHKQRTLRPSSQLLPNMSRV
LKLNKVQEVIFGLSLLSSSNEDLKSHAAQFVKHKLPDLLRSYIDADVGSVQEGGLTDVAI
EVLHRLLTHVVHGPREQVGVGDDQVTAFVETLKKDFPKERVPVVLAPLLYPELQDISPDN
LIPEPSIFSKSVMEDDLADLIHEIGYSSCASVDECKNTLIHFGVQDITPSSVARVIGMMV
KTVFGLGEHVTIQNYGSSSVSLDKLGLSELTPGPATWNVEVFVQTLKEMIPLLSWRQVIQ
EFDYPEFHVPSREGLQLLFTACHRGLMEIFPVDVLYRTWTNTDGQLSWIQQVLSNPDVFC
FADYPCHTVVIDLLKTAPEDDNRETATWKSLNLSETLLRLAEAGHYETVKSLFTFPLKHC
PDVLLLALLQINPLWHTLRNELVLQLIPVFLANHPNSGSVLHYVWHGQGQSASIRQLVMQ
AMAEWYSKGDMDQGRLSRILDVAQDLKALSMLLNGSPFVFVIDLAALASRREYLKLDKWL
KDKLKEHQEEFGQACVAFLRRRCPYLLGMSLDKELPKSVQLPQETVVTMLSCLQSFLGQA
SPELAETISQMLTNHGPLVKVRPSAAVVGIPFKRQGSLDGGQLQNVLAGQLDSLTGLNIP
TSSLPPTPATPTSQLPSFPPHPLTGNALGPSGSVGAVGSIGSGLPSQAAVQKPPSQLGQL
PLSTPGATSSSGLQSPSFSSSQNPLLQQLHQAGSLAQSFGGSAIDNARLLAGLGIQKQLG
GSSLLQQQQQQTTLLSQSRNQADKLRTVSTADVSQVWPGMDQSFTKEVEDEANSYFQRIY
NHPPNPTISIDEVLEMLKKFKDSPVKKERDIFLCMLRNLFEEYRFFPQYPDKELHTTACL
FGGIIEQGLVTYMALGIALRYVLEALRKPFGSKMYMFGIAALDRFKTRLKDYPHYCQHLA
SIPHFMEFPHSLIEYIEYGQQSREPLLGGRNIQEPLTSRLLNRTTPTLTSAPGSSTFTST
AVSRSLPLGPSIPPGPSVPLPPSIPLVSTSTATSLSSTKSSSVSENASASSPVRSKEPSI
ATANNIDTLLGATETSEIVQPPESVQDKVHFIFNNISQTNLQQKAEELRNLIQSEYILWM
TQYLVMKRASIEPNYHQLYLEFMESVELTNLAREVLKETYRNIKVLLQSDKVPANFSDRS
LLKNLGHWLGLQTLARNKPILMKDLDLKSLIIEAYFKGQQEMLYVVPFVAKVIESSAKSI
VYKPPNPWVMAIMSVLVELHQMPDLKLNLKFEVEVLCNTLSLEMKELKASELLKDPEQLK
HIPHQLSSPEKEKQSVVSNSSTPTPTGSAQQGQPPVAPPPPQYSYQEINVASLAGLAPHI
QINAQIPIFQQHPHLRQFVRPAIERAVQELVHPVVERSIKICLTTAEMIVKKDFALDPEE
SRMRAAAHHMVRFMTAGMALITCREPLLISINNNLRSNFLAALRGANQQQKDMIEQAASV
ISEDNTELACAFIQKTAVEKALPEMDKRLTTEFDLRRIARSEGRRYCDPVVLTYQAERMP
EQIRLKVGGVNANQTAVYEEFARSIPGFQPPSSGEAITTPPLPKPIGILGNAEAFMPEEV
VQILSKCAAEIEQHLHAIIAPPTNQHVATIHSLLETVVQARISRDNMAALRLLHKAVEGL
LEGVGTLGNDAELSLRYRDCHLIVLRGLQDPRGYGLMWTARHVTKFVCECPPELKFNVDA
IDILIRSHLLNMREFDLHLVQCIDNGHNIQALHFAIQLAKYVSDDKQSPHVTENDLYHTI
EALTRIAHSRQNSDGLSSFLESSHNGPLPSQPVGTHQEIGDNKAPGGPTSLTSGVSASGV
TGSFHVYEDPPGLHEKVEYLLREWVRLCHQPGAGKESEKAFSTFVALLHQQGILRTDDLI
TRFFRISTELCVEVTYRALGDHPNSPTTARAKCYNTLDAYCRLIALLVRHSGDASNNVTK
INLLSRVLGTVATVLFQDHEIRHTEFQQLPYHRTFIMLLVELNQPEPILEAINFQVLQTF
STVFHALRPSRAPGFAYAWLELISHRLLMSKLLLNTPQQKGWVLFQQLLIDLFKFLAPFL
RNAELAKQTHLLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPNCIQMRNLILSAFPRN
MRLPDPFTPNLKVDLLTDIAHSPRILTNFASAIQPASFKKDLDSYLKTRAPVTFLTELRS
HLQVSNEPGTRYNVPLMNALVLYVGTQAITYIHSKSGTPSMSTITHSSHMDIFQNLAVDL
DTEGRYLFLNAIANQLRYPNSHTHYFSCVLLYLFAEANTEAIQEQITRVLLERLIVNRPH
PWGLLITFIELIKNHQYKFWTHEFVHCAPEIEKLFESVARSCMQQKQAPPRETSESRE
NT seq
7377 nt
NT seq
+upstream
nt +downstream
nt
atgagtgcttgtgtagattctttgtctttggcactggggcaaattagctttgcagtcaac
gatttgactaagaagaactacaaagctactttaaaggaaatacacgagctgattgaaaaa
catggctatgaggcagagcgtcatttattccgttgtttattttcctttattgacttcact
ggagatggcaaaaataatggcaaagactttctacagtgccagtttctaattcaagaatgc
cagatgcttgtctccaagcccaacttttcctctatcttgtgttttgccattgaaagtcca
gagcataagcagcgtacgttgaggccttcatctcaattactacctaacatgagcagagtt
ttgaagcttaacaaggtccaggaggttatctttggtcttagtcttcttagttcatcaaat
gaagatctaaaaagtcatgctgcccagttcgtaaaacacaaattaccagatcttttgagg
tcctatatagatgcagacgttggaagtgtacaagaaggagggctgactgatgttgcaata
gaagttttgcatcgtcttctcactcatgtagtacatgggccaagggagcaagttggcgtt
ggagatgatcaagtgacagcctttgtggaaacattgaagaaagattttcccaaagaacgt
gtccctgttgtgttggcaccacttctttacccagaattacaggatatttcaccagacaat
cttattccagaaccatctattttttctaaatctgtgatggaagatgatttagctgacctt
attcatgaaataggatattctagttgtgcaagtgtcgatgaatgtaaaaatactctaatc
cactttggtgttcaagatataaccccatcatctgttgccagagttattggaatgatggtt
aaaactgtgtttggccttggtgaacatgttactatacaaaactatggcagcagctctgtg
tctttggacaaacttggacttagtgaactcactcctggacctgctacatggaatgtggaa
gtctttgttcaaactttgaaagagatgattcctcttcttagttggcgacaagttattcaa
gaatttgattatcctgaatttcatgttccaagccgggaaggactccagcttctattcaca
gcttgccacaggggtttgatggagatatttccagtggatgtcctgtataggacatggaca
aatacagatggccagttgtcctggatccaacaagtgctatccaatcctgatgttttctgt
tttgctgattacccttgccacacagtggtgattgatctgctgaagacagcaccggaggat
gataacagagagacagccacatggaagtcactcaatctgtctgaaacacttctgaggtta
gctgaggcaggtcattatgagacagtcaaatcactgttcacatttcctttgaagcactgc
ccggatgttttactgcttgctttactacagatcaatcccctgtggcatacactgcgaaat
gagcttgttttacaactcatcccagtgttcctggccaatcatcctaattctggcagtgtt
ttacactatgtctggcatggacagggtcagtcagcatcgattcgtcaacttgtaatgcaa
gctatggctgaatggtattcaaaaggagacatggatcaaggcaggctatcaagaatatta
gatgtggctcaagacctgaaggcattgtccatgttattgaatggctctccatttgtgttt
gtgattgaccttgctgcccttgcatctcgtcgtgaatatctaaagctggacaaatggtta
aaggacaaactcaaggaacaccaggaggaatttgggcaagcctgtgttgcttttctgcga
cgccgctgtccttacttattgggtatgtccttagataaagaacttcctaagagtgttcag
ctaccacaggagacagttgtaactatgctttcctgccttcagtcatttttggggcaagca
tctcctgaattggctgaaaccataagtcaaatgctgacaaaccatggtcctttagtcaag
gtgcggcccagtgctgctgtggttggaattccttttaaacgacaaggtagcttggatggc
ggacaacttcaaaatgtattggctggacagcttgattcgctcacaggactcaacattccc
acttcatctcttccgcccacacctgccacacccacctcgcagttaccatctttcccaccc
catccccttacgggcaatgcacttggaccctcaggcagcgtgggagctgtgggtagtata
ggttcaggcctcccatcacaggcagcagtgcagaaaccaccatcccaactggggcagctt
cctcttagcactccaggtgctacttcaagctctggccttcaatcaccaagtttcagttct
tcccaaaaccccttgctgcagcaattgcaccaagcaggcagtctggcacagtcttttgga
ggatcagcaatagataatgccagattgttagctggtcttggaatccaaaaacagcttgga
ggaagttctttactacaacaacagcagcagcaaacaacgcttttatctcagtcaaggaat
caagctgataagttacgcaccgtatcaacagcagatgtgtctcaggtctggccgggtatg
gaccagtcttttacaaaagaagtggaagatgaagccaattcatactttcaaaggatttac
aatcacccacctaatccaacaattagcattgatgaggtgttagaaatgctcaagaaattc
aaggattcaccagttaaaaaggaaagggatatatttctctgcatgcttcgaaacttgttt
gaagagtacagattctttcctcagtatcctgacaaggaacttcacacaacggcttgctta
tttggtggtattattgagcaaggattagtgacatacatggctctgggaattgcacttcgc
tatgttttagaagcattgaggaaaccatttggttccaagatgtacatgtttggaattgct
gctttggatcgattcaagacaaggctcaaagattatcctcactattgccagcatcttgcg
tcaattccgcactttatggaatttcctcactccttgatagaatacattgagtatggacaa
cagtcaagggaaccattgttaggaggaaggaacattcaggagccactaacatcaagacta
ctgaaccgaacaacgccaacactaacaagcgcaccaggcagctcaacttttactagcact
gcagtaagcagatctttacctcttggtcctagtattcctccagggccatctgttcctcta
cctccatcaattcctttggtttccacctcaactgccacatctctctcttccacaaagtct
tcatctgtttcagaaaatgcttctgcatcatctcctgttagaagcaaggaaccatccatt
gcaacagcaaataacattgatacacttttgggtgcaactgaaacaagtgaaatagttcaa
cctccagaatctgttcaagacaaagtgcactttatctttaacaatatttcacaaacaaat
ttacaacaaaaagctgaagaactcagaaatctgatccaaagtgaatacatattgtggatg
acacagtatctggtcatgaaaagagccagtatagaacccaactatcatcagctgtatttg
gagttcatggaatcagtagagttaacaaaccttgctagggaagtgctcaaggaaacgtac
agaaacataaaggtgctcctgcaatctgacaaggttccagcaaatttctctgatcgatca
ctactgaagaatcttggtcattggctaggattgcagaccttagcaagaaacaaaccaatc
cttatgaaggatcttgatctcaagtctttgatcattgaagcttatttcaaagggcaacag
gaaatgctgtatgtggttccatttgttgctaaagtcatagaatcatctgctaaaagcata
gtgtataaaccaccaaatccttgggttatggccatcatgtctgttttggtagaattgcac
cagatgcctgatttaaagctgaatctcaagtttgaagtggaagtgctttgtaatacactt
tctcttgagatgaaggaactgaaagcatcagagcttttgaaggatcccgagcaattaaaa
cacatccctcaccaattgtcatccccagagaaagaaaagcaatctgttgtcagcaacagc
tccacccctaccccaacaggatcagcacaacaaggacaacctccagtggctcccccaccc
cctcagtattcatatcaagaaatcaatgtggcctcactggctggtttggcacctcacatt
cagatcaatgcacagatcccgatatttcagcagcatccacacctgaggcagtttgtgcgc
ccggctattgaacgggccgtgcaggaacttgtccatccagtggtggaaagatcaatcaaa
atctgtcttacaactgctgagatgattgtgaagaaggattttgctctcgatcctgaagag
tcccggatgagagcagcagcgcatcacatggtacgcttcatgacagcgggcatggcattg
atcacgtgtcgagagccgctactgatcagcattaacaataatctgagatcaaacttcctc
gctgctcttaggggtgcaaaccagcagcagaaagacatgattgaacaagctgcgtcagtt
ataagcgaggataacacagaactggcctgtgcattcatccagaaaacagctgtggagaag
gcgttgcccgaaatggacaagcgattaaccacggaatttgatcttcgtcgcattgctcgc
agtgagggccgtcggtactgtgaccccgtggtgttgacttatcaagcagagcgcatgcct
gaacagattcgattgaaggttggaggagtaaatgccaatcagacagcggtctacgaggag
tttgcgaggagcatacctggattccaacccccctcatccggggaggccatcactactcca
cccctaccaaaacctattggaattctcggcaatgctgaggcgtttatgccagaggaagtc
gtccagatactgagtaagtgtgcagcggaaattgaacagcatcttcacgccatcatagca
ccaccaaccaatcagcatgtcgctaccatacacagcctactggaaactgtagtgcaggcg
cgcatatcaagagacaacatggccgctctgaggcttttacacaaggcagtggaagggttg
ctggagggtgttggcacgttaggaaatgatgccgaactgtcgttacgctaccgtgactgt
catcttattgtgctaagaggactccaggatccacgtggatatgggcttatgtggacagct
agacacgtgacaaagtttgtgtgtgagtgccctcccgagttgaagtttaacgtagatgct
attgacattctgattcgcagtcatctgttgaacatgagggagtttgatcttcaccttgtg
cagtgtatcgacaacggccataacattcaagcgttgcattttgctattcagcttgctaag
tatgtgtcagatgacaaacagagtccacatgtcactgagaatgatctatatcataccatt
gaagcgttgacgagaatagctcacagccggcagaattctgatgggttgtcctcgttcctg
gagtctagtcacaatggtcctctgccatcgcagcctgtgggtactcatcaggagattggt
gataacaaggcccctggaggccccacatctctgacctctggcgtgtccgcttcaggtgtc
actggttcatttcatgtctatgaggatcctcctgggctgcacgaaaaggtcgagtactta
ttaagagaatgggttcgcctatgtcaccaacccggagcaggaaaggaaagcgaaaaggcg
ttttccacgtttgtggccctattacaccagcaaggcattctgcgaacggatgatttgatc
acgagattcttccgcataagtactgaactgtgcgtagaagtgacttaccgagctctgggt
gaccatcccaacagcccgacaacggcacgagccaaatgttacaataccttggatgcctac
tgtcggttgatagcactgcttgtgcgtcactcaggcgatgcctccaataatgtcaccaaa
atcaatctcctaagcagggttcttggaacagtagctacagtgctcttccaggatcacgaa
atccgtcacacggaatttcaacagttgccttatcatcgtacattcataatgttactagtg
gaactcaaccaacccgaaccaattcttgaggcaattaattttcaggtgttgcaaacattc
agtactgtgtttcatgcccttcgtccatcccgggctccggggtttgcgtacgcatggtta
gagctgatatctcatcgcttactcatgtccaagcttctacttaacacaccacaacagaag
ggttgggtgctatttcagcagctgttaattgacctgtttaagtttttagcgccatttttg
cgtaacgctgagctggctaagcaaacacacttgctttacaagggaacattgcgcgtcttg
ctggtgcttcttcatgacttcccagagttcctttgtgattatcacttcagtttttgtgac
gtcatccctcctaactgcatccagatgagaaacttgattctcagtgcctttccacgcaat
atgaggctgccagatccctttacaccgaatttgaaggttgacctgttaaccgacatcgcg
cattctcctcgtatcttgaccaatttcgcctctgccatccagcctgccagctttaaaaag
gatcttgattcttatctcaagactcgtgctccagtgacatttctgacagagctcaggtcg
cacctgcaggtatccaatgaaccaggcacccggtataacgtacccctaatgaatgcgctg
gtcctttatgttggtacccaagccatcacctacatacacagtaagagtgggacaccctcc
atgtcaacaatcactcattcgtcccacatggacatcttccagaatttagccgtggatctg
gatacagaaggccgatatcttttcttgaacgctattgcaaaccagttgcggtaccctaac
agccatacgcactacttcagttgtgttttgttgtacttatttgctgaagccaacacagag
gctattcaagaacagatcacaagggtactgctagagcgattgatcgttaatagacctcat
ccgtggggtctcctgatcacattcattgagctcatcaagaaccatcaatacaagttttgg
acgcacgaatttgtacactgtgccccggagattgaaaagttgttcgagtccgtagctcgc
agctgtatgcaacagaaacaggcgccgccccgagaaacaagcgaaagcagagagtga
DBGET
integrated database retrieval system
