Mycolicibacterium chubuense: Mycch_1898
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Entry
Mycch_1898 CDS
T02150
Name
(GenBank) formamidopyrimidine-DNA glycosylase Fpg
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mcb
Mycolicibacterium chubuense
Pathway
mcb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mcb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mycch_1898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mcb03400
]
Mycch_1898
Enzymes [BR:
mcb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Mycch_1898
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Mycch_1898
DNA repair and recombination proteins [BR:
mcb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Mycch_1898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
TackOD1
DUF5830
Auto_anti-p27
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
AFM16683
UniProt:
I4BHC6
LinkDB
All DBs
Position
1968457..1969308
Genome browser
AA seq
283 aa
AA seq
DB search
MPELPEVEVVRRGLNEHVTGKTITAVRVHHPRAVRRHEAGPADLAARLLDATVTGTGRRG
KYLWLTLADGGALVVHLGMSGQMLLGPVPNENHLRIAALLDDGTTLSFVDQRTFGGWLIA
DLVTVDGTDVPAPVAHIARDPLDPQFDRDRVVNVLRGKHSEIKRQLLDQTVVSGIGNIYA
DEALWRAKVNGARLASGLSRPKLAELLDAAAVVMTDALGQGGTSFDSLYVNVNGESGYFD
RSLDVYGREGEPCRRCGAVMRREKFMNRSSFYCPRCQPRPRVR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactgcctgaagtcgaggtggtccggcggggattgaacgagcacgtcacaggt
aagaccatcacggccgtccgggtccaccatccgcgcgccgtgcgccgtcacgaggccgga
cccgcggacctggccgcgcgcctgctcgacgcgacggtcaccggcacgggccggcgcggc
aagtacctgtggctgacgctggccgacggcggcgcgctcgtcgtgcacctcgggatgagc
gggcagatgctgctgggtcccgtgcccaacgagaaccatctgcgcatcgcggcgctgctc
gacgacggcacgacgctgagcttcgtcgaccagcgcaccttcggcgggtggctgatcgcc
gacctcgtgaccgtcgacggcaccgacgtgcctgcgccggtcgcgcacatcgcccgggat
ccgctggacccgcagttcgatcgcgatcgcgtggtgaacgtgttgcgcggcaagcattcc
gagatcaaacgccaactgctcgaccagaccgtggtgtccggcatcgggaacatctacgcc
gacgaggcgctgtggcgtgcgaaggtcaacggggcgcggctggcgtcggggctgtcgcgg
ccgaagctcgccgagttgctcgacgcggccgccgtggtgatgaccgatgcgctgggccag
ggcgggacgtcgttcgattcgctctatgtcaacgtcaacggcgagtccggctacttcgac
cggtcgctggacgtctacggccgcgagggcgagccgtgccggcgctgcggcgcggtgatg
cggcgcgagaagttcatgaaccgctcgtcgttctactgcccccgctgccagccacgtccc
cgcgtgcgctga
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