KEGG   Mugil cephalus (flathead mullet): 125008148
Entry
125008148         CDS       T08342                                 
Symbol
thoc3
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
mcep  Mugil cephalus (flathead mullet)
Pathway
mcep03013  Nucleocytoplasmic transport
mcep03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mcep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125008148 (thoc3)
  09122 Translation
   03013 Nucleocytoplasmic transport
    125008148 (thoc3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mcep03019]
    125008148 (thoc3)
   03041 Spliceosome [BR:mcep03041]
    125008148 (thoc3)
Messenger RNA biogenesis [BR:mcep03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     125008148 (thoc3)
Spliceosome [BR:mcep03041]
 Complex C
  Other components
   EJC/TREX
    125008148 (thoc3)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    125008148 (thoc3)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40_CDC20-Fz WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 WD40_WDHD1_1st WDR55 ANAPC4_WD40 Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_Aladin Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st eIF2A Beta-prop_EML Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_1st WD40_RFWD3 RMC1_N Beta-prop_WDR35_TULP_N Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_HPS5 NBCH_WD40 Tricorn_2nd WDR90_beta-prop_4th B-prop_COPA_B_2nd Beta-prop_ACSF4 Beta-prop_SPT8 PD40 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_WDR41 Beta-prop_NWD2_C Beta-prop_Nup120_160 WD_LRWD1 Cytochrom_D1 Me-amine-dh_H Beta-prop_WDR11_1st DPPIV_N Beta-prop_ELP1_1st YNCE PROPPIN Beta-prop_SCAP Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 125008148
NCBI-ProteinID: XP_047441198
LinkDB
Position
5:complement(27600332..27603784)
AA seq 322 aa
MASQYYQEMQESFKNNSKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDLFVTASGDKTIRIWDVRTTKCIATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDAKTHRSRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWDVDELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGDKLWEVQCDSPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtcgcagtactaccaagagatgcaggagagctttaagaataacagcaaaagtcgg
gaattcccggctcacacagccaaggtccactcggtggcgtggagctgcgacggcaggaga
ctcgcctccgggtcttttgacaaaacagccagcgtgtttgtcctggaaaaggaccgtttg
gtgaaagagaacaactacagaggccacggcgacagcgtggatcagctctgctggcatccg
accaacccggatctgttcgtcaccgcatccggagacaagaccatccgcatatgggacgta
cgcaccacaaaatgcatcgccaccgtcaacacaaaaggtgagaacatcaacatctgctgg
agccccgacggtcagaccatcgctgtcgggaacaaagacgacgtggtgaccttcatcgac
gccaagacgcatcgctccagggcggaggagcagttcaagttcgaggtgaacgagatctcg
tggaacaacgacaacgacatgttcttcctcacaaacggaaacggttgcatcaacatcctg
agttatccagaactgaagcccatccagtccatcaacgctcacccgtccaactgcatctgc
atcaagttcgacccgacggggaaatacttcgccacaggaagcgccgacgccctcgtcagc
ctgtgggacgtggacgagctggtctgcgtccgctgcttctccagactggactggccggtg
aggacgctgagcttcagccacgatgggaagatgttggcttcggcctccgaggatcatttc
atcgatatcgcagaagtggagacgggagacaagctgtgggaggttcagtgcgactcgccg
accttcaccgtggcctggcatcctaagaggcctctgctcgcctacgcctgcgacgacaag
gagggaaagtacgacaacaaccgagaggcgggaaccgtcaaactcttcggcctccccaac
gactcctga

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