Mugil cephalus (flathead mullet): 125011607
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Entry
125011607 CDS
T08342
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
mcep
Mugil cephalus (flathead mullet)
Pathway
mcep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125011607 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mcep03041
]
125011607 (snrnp200)
Enzymes [BR:
mcep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125011607 (snrnp200)
Spliceosome [BR:
mcep03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
125011607 (snrnp200)
Complex C
U5 SnRNP specific factors
125011607 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
WHD_SNRNP200
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
125011607
NCBI-ProteinID:
XP_047446769
LinkDB
All DBs
Position
8:18812734..18824855
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKAQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAELGCTL
SANLGVTGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMESDQELSKIL
YQLQETEKEDIIREERSRRERVRKSRVDDLEAMDIDHGESMAPRQLLDLEDLTFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVAIEKLPKYAQAGFEGFKTLN
RIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVDDFKIIYIA
PMRSLVQEMVGSFSKRLATYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLPDMLN
AEIVLGNVQNVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLVHTAVS
VLDKNSLIKYDKRSGNFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKVHASSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLDKINDPTLKETLANGVGYLHE
GLSATERRIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEDILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFCNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPAMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgtcaccgctcgtagcttgcagtatgagtacaaagcgaactcaaacttggtg
ttgcaagctgatcgctctctgatcgaccgcacacggagagatgaacccaccggagaggtc
ctgtccctggtgggaaagttggaggggaccaagatgggtgacaaggctcagaggaccaaa
cctcagaagctggaggagagacgagacaagagaagaaaaagagacgaggacagacatgac
atcaacaaaatgaaaggcttcacccttctgtccgaaggcattgatgaaatggtgggcatc
gtgtacaagcctaaaaccaaagaaaccagagagacctacgaggtgttgcttagcttcatc
catgcagctttaggagatcagccacgtgatattctgtgtggagcagctgatgaagtgtta
gcggtgctgaagaatgacaaaatgagggataaagaaaggcggcgtgaagtagagcagctt
ctcggacctgctgatgatacacgctaccatgtgttggtcaatctgggcaagaagatcacc
gactatggaggagacaaggatttacagaatatggatgacaacattgatgaaacatatggt
gtcaatgtccagtttgagtctgatgaggaggaaggggatgaagaccagtttggcgaggta
cgagatgagcactcggatgaagatagtgaaggagaagaagcagaattgggctgcaccctt
tcagctaatctcggtgtcaccggtgatgtgatgacagtgaagaaaaaagatttgcatcct
cgagacatcgatgccttctggctccagcgacagctcagtcgtttctatgatgacgccatc
gtctcacaaaagaaagcggatgaagtgttagaaatcctcaagactgcaagcgatgacaga
gaatgtgagaaccagctggtgttgctgttgggcttcaacacctttgatttcattaaaatc
ctccgtcagcatcgtcgcatgattcaatattgtaccatgctggcaagtgctcagagtgag
gcagaaaaagagcggatcataggaaagatggagtctgaccaggaactgtcaaagattctc
taccagctgcaagagacggagaaggaagatatcattcgagaggagcgatctcgcagggag
agggtgaggaagtcccgtgtggatgacctggaagcaatggacattgaccatggagagtca
atggcccctcgacagttgctagacctcgaggacctgaccttcactcaagggagccacttc
atggccaacaagcgttgccagctgccagatggttcttttcgcaaacagcgtaaaggttat
gaagaagtccatgtgcctgccctcaaacccaagccctttgctgatgatgaggtccttgtt
gccatcgagaagttgcccaagtatgctcaggctggatttgagggtttcaaaactcttaat
cgcatccagagcaaactgtttaagacagccatggagacagatgagaacctgcttgtgtgt
gcgcccacgggagctggtaagactaatgttgccctgatggcaatgctgagagaaattgga
aagcacataaacatggatggaacaatcaatgtggatgacttcaaaatcatctacattgcc
cccatgcgctcactagtacaggagatggtgggaagttttagtaagcgtttggcgacttat
ggcatcacagtatccgagctgacaggagaccaccagctctgcaaagaggagatcaacgca
actcaaatcattgtctgcaccccagagaaatgggacattatcacccgtaaaggtggagag
cgtacctacacgcagcttgtgcggctaattattattgatgaaatccacttgttgcacgat
gaccgtgggcccgtgttggagtcgctggtggcgaggaccatccgcaacgtggagctgacc
caggaggatgtgcgtctgctgggtctcagtgccacactgcccaactacgaagatgtggct
acctgcttgcgtgttgatccggccaagggacttttctactttgacaacagtttccgtccg
gtgcccttggagcagacctatgttggcatcacagagaaaaaggccatcaagcgcttccag
atcatgaatgagatcgtctatgagaagataatggaacatgctggaaaaaaccaggtgctg
gtgtttgtccactccaggaaggagacaggaaagactgccagggccataagagacatgtgc
ttggagaaggacactctgggtcttttcctgagagagggttctgcatctactgaagtgttg
aggactgaggcagagcagtgcaagaacctcgagctgaaggacttgctaccttatggcttc
gccatccaccacgctggtatgaccagagtcgaccgtacgctggtggaggatttgtttgcc
gaccgacacattcaggttctggtgtctacagccactctggcttggggtgtcaatttgcca
gcacatactgtgatcatcaaaggaacccaagtgtacagcccagagaaaggcagatggact
gagctgggagctttggacattttacagatgcttggtcgagctggtcgtcctcagtacgac
accaaaggtgagggaatcctgatcacgtcgcacggagagctgcagtattatctgtccctg
ctcaatcagcagctgcccatagagagtcagatggtgggcaagctgccggacatgctcaac
gccgagatcgtcctggggaacgtgcagaacgtcaaggatgccgtgaactggctcggctac
acctacttgtacgtgcgcatgctccgcaaccccaccctgtatggggtttctcatgatgac
cggagctctgaccccctgctggagaggcgcaggatggacctggtgcacacagcggtcagc
gtcctggacaagaacagcctcatcaaatatgacaagaggagtggaaacttccaggtcaca
gacttgggacgcatagccagtcacttctacatcactcatgactcgattcaaacctacaac
cagctgcttaaaccgactctcagcgagattgaactcttcagagtcttttctctttcctca
gagttcaagaacatcacagtgagagaggaggagaagcttgagcttcagaagcttctggaa
agagtccctattcctgtgaaggaaagcatcgaggagcctagtgctaagatcaatgtgctg
cttcaggcgtacatctctcaactcaaacttgaaggctttgctctcatggctgacatggtc
tatgttacacagagcgctggaaggttgatgcgggccatttttgagattgtgctgagcaga
ggctgggctcaactcacagacaagaccatgaatctctgcaagatgattgacaagaggatg
tggcagtcgatgtctcctctgcgacagttcaagaagctgccggaggaagtgatcaagaag
attgagaagaaaaacttcccctttgagcgtctctatgacctcaaccacaatgaaatcggt
gaactgatccgaatgccaaagatggggaagaccatccacaaatacgtccaccagttcccc
aagctggacttggccgtccatctgcagcccatcactcgctccacactcaaagtggagctc
accatcacacctgacttccagtgggatgacaaggttcatgcatcatctgaggctttctgg
atcctggtggaggatgtggacagtgaagtcatcctgcaccacgagtacttcctcctcaaa
gccaagtacgcccaggatgagcacctcgtgaccttctttgtcccggtgttcgagcctctg
ccaccgcagtacttcatccgcgtggtctcagaccgatggctttcttgtgagactcagctc
ccagtgtctttccgtcaccttatcctgccagagaagtaccccccacctaccgagctgctg
gacctgcagccgctgcctgtcactgctctcaggaactctgccttcgaagccctctaccag
aacaagttccccttcttcaaccccattcagactcaagttttcaatgctgtgtacaacagt
gatgataatgtgtttgtgggagctcccactgggagtggaaagaccatctgtgctgagttt
gccattctgagaatgttgctgcacaacgcagaaggtcgctgcgtctacatcaccccaatg
gaagcactggctgaacaggtgtttgtggactggcaccagaagttccaggacatcttgaac
aagaaggtggtgctgctgacaggagagacgagcacagatctgaagctgttgggaaaggga
gacataattgtcagtacccccgacaaatgggacatcctgtctcgtcgctggaagcagagg
aagaacgtccagaacgtcagccttttcatcgtggatgaggcacacctgatcggaggagaa
aatggacctgtgttagaggtgatctgctccaggatgagatacatctcctctcagattgag
cgtcccatccgcatcgtggccctcagctcgtctttgtccaacgccaaagacgtggcccac
tggctgggctgcagcaccacggccacattcaacttccaccccaacgtcagacccgtgccc
ctggagctgcacatccagggcttcaacgttagccacactcagactcgcctgctgtctatg
gctaagccggtgtatcacgccatcatgaagcactctccctccaagccggctgtggtgttc
gtcccatcacgcagacagactcgtctcacagccattgacatcctcaccttctgtgctgct
gatgtggttcctcagaggttcttgcattgcactgagaaagacctggctccattcctggac
aagatcaatgatccgactcttaaggagactctggccaacggtgttggatacctgcatgag
ggtctttctgcaactgaacgcagaatagtggagcagctcttcaactcaggtgccgttcaa
gtggtggtgtcttctcgctctctctgctggggcatcaacatctctgcacaccttgtcatt
gttatggacacccagtactacaacggcaaaatccacgcatatgtggactatcccatatac
gacgtcctgcagatggtgggcaaggcaaacagacctatgctggatgatgaggggcgctgt
gtcatcatgtgccagggctctaagaaggacttcttcaagaagttcttgtacgagccactg
ccagtggagtctcacttggatcactgtctccacgaccacttcaatgctgagatcgtcacc
aagacggtggagaacaagcaggacgccgtggactacctgacatggacattcctctaccgt
cgtatgacccagaaccccaactactacaacctgcaaggcatgtctcatcgtcacttgtcc
gaccacctgtctgagctggtagaaaacacgttgcatgacctggagcagtccaagtgcatc
agcatagaggacgaaatggacgtggcgccactcaatttgggcatgatcgctgcctactac
tacatcaactacaccaccatcgagttgttcagcatgtcccttaacgccaagacaaagatc
cgtggcttgattgagatcatctccaatgctgccgagtacaagaacattcccatcaggcac
catgaggacacacttctccgacagctggcacagaaggtgccccacaaactgaacaacccc
aagttcaacgatccacacgtgaagacaaacctgctgctgcaggcccatctctccaggatg
cagctgagcgctgagctccagtcggacactgaagacatcctaagcaaggcgatccgtctg
attcaggcctgcgtggacgtgctgtccagtaatggctggctgagtcctgcactggctgcc
atggagctcgcccagatggtcactcaggccatgtggtccaaggactcgtacctcaaacag
ctgcccttcttcacctcggagcacattaagcgctgcacagacaagggtgtggagagcatc
tttgacatcatggagatggaggacgaagacagaaccgctttgctgcagctctcggatgca
cagatggccgatgtggctcgcttctgtaaccgctaccccaacatcgagctttcatatgaa
gtggcagaaaaggacaacatcaagagtggcagtccagttctggttcaggtgcagctggag
agagaggaggaggtgactgggcctgtcattgccccgctcttcccccagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtctaacagcctcatctctatcaagagactg
acccttcagcagaaagcaaaggtgaaactggactttgttgcaccagcgatgggcgttcac
aactacaccctgtacttcatgagcgacgcatacatgggctgtgaccaggagtacaagttc
agcgcagatgtgaaggaggccgacagcgacggagacagcgactcagactaa
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integrated database retrieval system
