Momordica charantia (bitter melon): 111008749
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Entry
111008749 CDS
T05045
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111008749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mcha03036
]
111008749
Chromosome and associated proteins [BR:
mcha03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
111008749
Chromatin remodeling factors
NuRD complex
111008749
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDII_SANT-like
DUF1087
Helicase_C
Chromo
HDA2-3
ResIII
PHD
CHDCT2
PHD_4
DEAD
SLIDE
Myb_DNA-binding
zf-HC5HC2H
C1_1
C1_2
E6
Motif
Other DBs
NCBI-GeneID:
111008749
NCBI-ProteinID:
XP_022137241
UniProt:
A0A6J1C6Q2
LinkDB
All DBs
Position
Unknown
AA seq
1470 aa
AA seq
DB search
MSSLVERLRVRSERRPIYNLDESDDEFDYKHKKPGSLQENFEKLVRDDKKEDACQACGES
ESLLSCETCTYAYHPKCLLPPLKAPLPSNWRCPECVSPLSDIDKILDCEMRPTLAGDSDA
SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKTHPRLKTKVNNFHRQMASNNNA
EEDYVAIRPEWTTVDRILACRENDEEKEYFVKYKELPYDECYWEFESDISAFQPEIDKFH
KIQSRSRKSSNKNKSSYGDIGEVKKKQKEFQQYDSSPQFLSGGTLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAYLASLYEENLLPHLVVAPLSTLRNWEREFATWAPHMNV
VMYVGSAQARAVIREYEFYFPKNHKKVKKKKSGQIVGESKQDRIKFDVLLTSYEMINFDV
VTLKSIKWQSLIIDEGHRLKNKDSKLFSSLKQFSSSHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFKDINQEEQILRLHRMLAPHLLRRLKKDVMKDLPPKKELILRVELS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDVEEAYK
QLLETSGKLNLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCAYKKWQYERIDGKVCGA
ERQIRIDRFNVKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKEL
FADENDEAGKSRQIHYDDAAIDRLLDRDQVRDEEATIDDEEDDEFLKAFKVANFEYIDEV
EAAAEEAAKRASMESKPVASNLERASYWEELLKDKYEEHKVEEFKTLGKGKRSRKQMVSV
EEDDLAGLEDVSSEGEDDNYEAEADLTDGETHSSGIPSGRKPYRKKSRVDSTEPLPLMEG
EGRAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKEYGTLFLSHIAE
DITDSPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKAKFAPDNPSAPLFTDDILFRYQGLK
GGKHWKEEHDRLLLLAVLKHGYGRWQAIVDDKDLKIQELICLELNLPVINLPVPGQTGSL
AQNGGNTSNTEATASESREKENGGGNDAASDAQGGTDTANQSQLYQDSSIFYHFRDMQRR
QVEFIKKRVLLLEKGLNAEYQKEYFGDTKAXEMTSEDIDNESKVSNVPGPSSVETDIQKM
DQLPQVDPISSEENSAAFDDNPDRLELSRLYNEMCKVVDVNCRELVHAPSGSHHVASDLK
NNLLPLEKIFEDVNRIFSPQPNPTEEQPTSDSGPQLAHGESPNNRASSVADSGSERAAVA
TNMEVDSATESKPQKESDKLMQVDLSPAEEKPEPSAHVPASEDPCLAQPECTPLPDKTSI
YEMEVEASKDTAAPEEHNGEGKSGVIVLDD
NT seq
4413 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcctggttgagaggcttcgtgttagatcagaacgaaggccaatttataatctt
gatgagtcagatgacgaatttgattataagcataaaaaacctggctcgttgcaggagaat
tttgaaaagttagtgagagatgacaagaaagaagatgcatgtcaagcttgtggagaaagt
gagagtcttctctcttgtgaaacctgtacatatgcttaccatcctaaatgtctacttcca
cccttgaaagctcctctaccgagcaactggaggtgccctgaatgtgttagtcccctaagt
gatattgataagatattggactgtgaaatgcggcctactcttgctggagacagtgatgcg
tcaaagcttggttcaaagcaaatttttgtgaaacaatatctagtaaagtggaaggggtta
tcttatctacactgcacatgggtgcctgagaaagaatttgtaaaagcctttaagactcat
cctcgcttgaagactaaagtaaacaattttcataggcaaatggcatctaacaacaatgct
gaggaagattatgttgctattcgccccgaatggacaacagtcgaccggattcttgcttgc
agggaaaatgatgaagaaaaagaatattttgtgaaatataaagaacttccttatgatgaa
tgttattgggaatttgaatcagacatctctgcctttcagcccgaaattgataaattccat
aaaattcagtctagatcccgcaagtcctctaataagaacaaaagcagctatggtgatatt
ggcgaagtaaagaaaaaacagaaagaattccaacaatatgatagtagtcctcaatttctt
tctggaggaacattacatccataccagcttgaagggttaaatttcttacgtttttcttgg
tccaagcaaacacacgtgatacttgctgatgagatggggcttggaaaaaccatacagagt
attgcctatttagcatccctttacgaagagaatctgttgccccatttggtggttgctcca
ctttcaacgcttcgaaattgggaacgtgaatttgctacatgggctcctcatatgaacgtt
gttatgtatgtgggctctgcccaagctcgtgcagttataagagaatatgaattttacttc
ccaaagaatcataagaaggtgaagaaaaagaaatctggccaaattgttggcgaaagtaag
caagatagaatcaagtttgatgttctgctaacatcatatgagatgattaactttgatgtg
gtaacactgaagtctataaaatggcaatccttgattattgatgaaggccatcggcttaag
aataaggattcaaaattattttcttcattgaaacagttttcaagcagtcatcgtgtactc
ttgactggaactcctcttcagaataatcttgatgaacttttcatgcttatgcacttcctt
gacgcggggaagttcggaagtcttgaggagttccaggaggagttcaaagatattaatcaa
gaggagcaaatcttgaggcttcacagaatgttagctcctcatctcctgaggaggctcaag
aaagatgtcatgaaggacctaccccctaaaaaagaacttattttgcgtgtcgaattaagt
agtaagcagaaagaatattacaaagccattttaacccgaaactatcaaatattaacccgc
cgtggtggtgcgcagatttctcttataaacgttgttatggaactgcggaagctctgttgt
catccttacatgttagaaggagttgagccagatatagaagatgtggaagaagcttacaaa
cagcttttggaaacttctgggaagctgaatttattggataagatgatggtgagactcaaa
gaacaaggtcatagagttctcatatattcacagtttcaacacatgttggacttgctggaa
gattattgcgcttacaagaaatggcagtacgaaaggatcgatggcaaggtttgtggtgct
gaaagacaaattcgaatagatcgatttaatgtcaagaattccaccagattttgttttctg
ctttctacaagagctgggggcctgggaataaatcttgcaactgctgacacagttatcata
tatgacagtgattggaatccccatgctgatctacaggctatggctagagctcaccgactt
gggcaaactaacaaggtaatgatttataggctagtaacacgaggaactattgaagaaagg
atgatgcaaatgacaaagaagaagatggtgttagagcatttggttgttggaaggctgaag
gctcagaacattaatcaggaagagctagatgatattatccggtatggctcaaaggaatta
tttgctgacgagaatgatgaagcaggaaaatctcggcaaattcattatgatgatgctgcc
atagatagattgctggatcgtgatcaagttagagatgaagaagcaaccatcgatgatgaa
gaggatgatgaatttctgaaggcctttaaggtggcaaattttgaatatattgatgaggtg
gaggctgcagctgaagaggcagcaaaaagggcatccatggaaagtaagcctgttgcaagc
aacttggaaagagccagctattgggaagagttgttgaaggacaaatatgaagagcataag
gttgaagagtttaaaactttgggtaaaggaaagaggagccgtaagcagatggtatctgtt
gaagaagatgaccttgctggactagaagatgtgagctccgagggcgaggatgataactat
gaagctgaagctgatttgactgatggtgaaacacattcttctggtattccttctgggaga
aagccttatcggaagaaatcccgtgtggatagcactgagccacttccattgatggaaggg
gaaggaagagcgttcagagttcttggtttcaaccaaaatcaaagggctgcgtttgtgcaa
attttaatgaggtttggggttggggattttgactggaaggagtttacttctcgtatgaag
cagaagacttatgaagaaataaaggaatatgggacacttttcttatctcacattgctgaa
gatattactgactcccccaacttttcagatggcgttcctaaagaaggactcagaatacaa
gatgtgctggtcagaattgcagttttactcttgataagagataaagcgaaatttgcccca
gacaatccgagtgctccactttttacagatgacattttatttcgataccaaggattaaaa
ggtggaaaacattggaaggaagaacatgatagattgttgctgcttgctgttctgaagcat
ggctatggtagatggcaagcgattgttgatgacaaggacctcaagattcaagagttgatt
tgtctggagttgaatcttcccgtcataaacctacctgtccccggacaaaccggttctctt
gcccagaatggtggaaacacatcaaacactgaagcaactgcaagcgagtcaagagaaaag
gaaaatggtggtggaaatgatgctgcatctgatgcgcagggaggaactgacactgccaac
caatcccagttatatcaagattcatctatcttttatcattttagagatatgcagaggagg
caggttgagttcatcaagaaaagagtgctcctcttggaaaaagggctgaatgcagagtac
cagaaagagtacttcggtgacacgaaggcaawtgaaatgacaagtgaagatattgataat
gaatccaaggtttcaaatgtgccaggtcctagctctgtggagactgatattcaaaagatg
gatcagttgcctcaagtagatccaatttcttcagaagaaaattctgctgcttttgatgac
aatcctgatagattggaattaagccggctttacaacgagatgtgcaaggttgtggatgta
aattgcagagagctggtgcatgctccctctgggagccaccatgtcgcttctgacttgaaa
aataacctcctccctcttgagaagattttcgaagacgtgaaccgaatcttttctccacag
ccgaaccccactgaagaacaaccaacatcggattctggtccgcaacttgcacatggtgaa
tcaccgaacaatagagcatcatcagttgcagattcagggagcgaaagggctgccgttgcc
acaaacatggaggtagattctgcaacagaatccaaacctcaaaaagaaagcgacaagttg
atgcaggtagacctcagtcccgcagaagaaaaacctgagccatctgctcatgttccagct
tctgaagatccatgcctcgctcagccggaatgcacacctctaccagataaaactagcatc
tacgaaatggaagttgaggcaagcaaggacaccgctgcaccagaagaacacaacggggaa
ggtaagtcgggggtgatcgtgttagacgactag
DBGET
integrated database retrieval system