KEGG   Momordica charantia (bitter melon): 111008749
Entry
111008749         CDS       T05045                                 
Name
(RefSeq) CHD3-type chromatin-remodeling factor PICKLE
  KO
K11643  chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
mcha  Momordica charantia (bitter melon)
Pathway
mcha03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:mcha00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111008749
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mcha03036]
    111008749
Chromosome and associated proteins [BR:mcha03036]
 Eukaryotic type
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111008749
  Chromatin remodeling factors
   NuRD complex
    111008749
SSDB
Motif
Pfam: SNF2-rel_dom CHDII_SANT-like DUF1087 Helicase_C Chromo HDA2-3 ResIII PHD CHDCT2 PHD_4 DEAD SLIDE Myb_DNA-binding zf-HC5HC2H C1_1 C1_2 E6
Other DBs
NCBI-GeneID: 111008749
NCBI-ProteinID: XP_022137241
UniProt: A0A6J1C6Q2
LinkDB
Position
Unknown
AA seq 1470 aa
MSSLVERLRVRSERRPIYNLDESDDEFDYKHKKPGSLQENFEKLVRDDKKEDACQACGES
ESLLSCETCTYAYHPKCLLPPLKAPLPSNWRCPECVSPLSDIDKILDCEMRPTLAGDSDA
SKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFVKAFKTHPRLKTKVNNFHRQMASNNNA
EEDYVAIRPEWTTVDRILACRENDEEKEYFVKYKELPYDECYWEFESDISAFQPEIDKFH
KIQSRSRKSSNKNKSSYGDIGEVKKKQKEFQQYDSSPQFLSGGTLHPYQLEGLNFLRFSW
SKQTHVILADEMGLGKTIQSIAYLASLYEENLLPHLVVAPLSTLRNWEREFATWAPHMNV
VMYVGSAQARAVIREYEFYFPKNHKKVKKKKSGQIVGESKQDRIKFDVLLTSYEMINFDV
VTLKSIKWQSLIIDEGHRLKNKDSKLFSSLKQFSSSHRVLLTGTPLQNNLDELFMLMHFL
DAGKFGSLEEFQEEFKDINQEEQILRLHRMLAPHLLRRLKKDVMKDLPPKKELILRVELS
SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDVEEAYK
QLLETSGKLNLLDKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCAYKKWQYERIDGKVCGA
ERQIRIDRFNVKNSTRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL
GQTNKVMIYRLVTRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKEL
FADENDEAGKSRQIHYDDAAIDRLLDRDQVRDEEATIDDEEDDEFLKAFKVANFEYIDEV
EAAAEEAAKRASMESKPVASNLERASYWEELLKDKYEEHKVEEFKTLGKGKRSRKQMVSV
EEDDLAGLEDVSSEGEDDNYEAEADLTDGETHSSGIPSGRKPYRKKSRVDSTEPLPLMEG
EGRAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKEYGTLFLSHIAE
DITDSPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKAKFAPDNPSAPLFTDDILFRYQGLK
GGKHWKEEHDRLLLLAVLKHGYGRWQAIVDDKDLKIQELICLELNLPVINLPVPGQTGSL
AQNGGNTSNTEATASESREKENGGGNDAASDAQGGTDTANQSQLYQDSSIFYHFRDMQRR
QVEFIKKRVLLLEKGLNAEYQKEYFGDTKAXEMTSEDIDNESKVSNVPGPSSVETDIQKM
DQLPQVDPISSEENSAAFDDNPDRLELSRLYNEMCKVVDVNCRELVHAPSGSHHVASDLK
NNLLPLEKIFEDVNRIFSPQPNPTEEQPTSDSGPQLAHGESPNNRASSVADSGSERAAVA
TNMEVDSATESKPQKESDKLMQVDLSPAEEKPEPSAHVPASEDPCLAQPECTPLPDKTSI
YEMEVEASKDTAAPEEHNGEGKSGVIVLDD
NT seq 4413 nt   +upstreamnt  +downstreamnt
atgagtagcctggttgagaggcttcgtgttagatcagaacgaaggccaatttataatctt
gatgagtcagatgacgaatttgattataagcataaaaaacctggctcgttgcaggagaat
tttgaaaagttagtgagagatgacaagaaagaagatgcatgtcaagcttgtggagaaagt
gagagtcttctctcttgtgaaacctgtacatatgcttaccatcctaaatgtctacttcca
cccttgaaagctcctctaccgagcaactggaggtgccctgaatgtgttagtcccctaagt
gatattgataagatattggactgtgaaatgcggcctactcttgctggagacagtgatgcg
tcaaagcttggttcaaagcaaatttttgtgaaacaatatctagtaaagtggaaggggtta
tcttatctacactgcacatgggtgcctgagaaagaatttgtaaaagcctttaagactcat
cctcgcttgaagactaaagtaaacaattttcataggcaaatggcatctaacaacaatgct
gaggaagattatgttgctattcgccccgaatggacaacagtcgaccggattcttgcttgc
agggaaaatgatgaagaaaaagaatattttgtgaaatataaagaacttccttatgatgaa
tgttattgggaatttgaatcagacatctctgcctttcagcccgaaattgataaattccat
aaaattcagtctagatcccgcaagtcctctaataagaacaaaagcagctatggtgatatt
ggcgaagtaaagaaaaaacagaaagaattccaacaatatgatagtagtcctcaatttctt
tctggaggaacattacatccataccagcttgaagggttaaatttcttacgtttttcttgg
tccaagcaaacacacgtgatacttgctgatgagatggggcttggaaaaaccatacagagt
attgcctatttagcatccctttacgaagagaatctgttgccccatttggtggttgctcca
ctttcaacgcttcgaaattgggaacgtgaatttgctacatgggctcctcatatgaacgtt
gttatgtatgtgggctctgcccaagctcgtgcagttataagagaatatgaattttacttc
ccaaagaatcataagaaggtgaagaaaaagaaatctggccaaattgttggcgaaagtaag
caagatagaatcaagtttgatgttctgctaacatcatatgagatgattaactttgatgtg
gtaacactgaagtctataaaatggcaatccttgattattgatgaaggccatcggcttaag
aataaggattcaaaattattttcttcattgaaacagttttcaagcagtcatcgtgtactc
ttgactggaactcctcttcagaataatcttgatgaacttttcatgcttatgcacttcctt
gacgcggggaagttcggaagtcttgaggagttccaggaggagttcaaagatattaatcaa
gaggagcaaatcttgaggcttcacagaatgttagctcctcatctcctgaggaggctcaag
aaagatgtcatgaaggacctaccccctaaaaaagaacttattttgcgtgtcgaattaagt
agtaagcagaaagaatattacaaagccattttaacccgaaactatcaaatattaacccgc
cgtggtggtgcgcagatttctcttataaacgttgttatggaactgcggaagctctgttgt
catccttacatgttagaaggagttgagccagatatagaagatgtggaagaagcttacaaa
cagcttttggaaacttctgggaagctgaatttattggataagatgatggtgagactcaaa
gaacaaggtcatagagttctcatatattcacagtttcaacacatgttggacttgctggaa
gattattgcgcttacaagaaatggcagtacgaaaggatcgatggcaaggtttgtggtgct
gaaagacaaattcgaatagatcgatttaatgtcaagaattccaccagattttgttttctg
ctttctacaagagctgggggcctgggaataaatcttgcaactgctgacacagttatcata
tatgacagtgattggaatccccatgctgatctacaggctatggctagagctcaccgactt
gggcaaactaacaaggtaatgatttataggctagtaacacgaggaactattgaagaaagg
atgatgcaaatgacaaagaagaagatggtgttagagcatttggttgttggaaggctgaag
gctcagaacattaatcaggaagagctagatgatattatccggtatggctcaaaggaatta
tttgctgacgagaatgatgaagcaggaaaatctcggcaaattcattatgatgatgctgcc
atagatagattgctggatcgtgatcaagttagagatgaagaagcaaccatcgatgatgaa
gaggatgatgaatttctgaaggcctttaaggtggcaaattttgaatatattgatgaggtg
gaggctgcagctgaagaggcagcaaaaagggcatccatggaaagtaagcctgttgcaagc
aacttggaaagagccagctattgggaagagttgttgaaggacaaatatgaagagcataag
gttgaagagtttaaaactttgggtaaaggaaagaggagccgtaagcagatggtatctgtt
gaagaagatgaccttgctggactagaagatgtgagctccgagggcgaggatgataactat
gaagctgaagctgatttgactgatggtgaaacacattcttctggtattccttctgggaga
aagccttatcggaagaaatcccgtgtggatagcactgagccacttccattgatggaaggg
gaaggaagagcgttcagagttcttggtttcaaccaaaatcaaagggctgcgtttgtgcaa
attttaatgaggtttggggttggggattttgactggaaggagtttacttctcgtatgaag
cagaagacttatgaagaaataaaggaatatgggacacttttcttatctcacattgctgaa
gatattactgactcccccaacttttcagatggcgttcctaaagaaggactcagaatacaa
gatgtgctggtcagaattgcagttttactcttgataagagataaagcgaaatttgcccca
gacaatccgagtgctccactttttacagatgacattttatttcgataccaaggattaaaa
ggtggaaaacattggaaggaagaacatgatagattgttgctgcttgctgttctgaagcat
ggctatggtagatggcaagcgattgttgatgacaaggacctcaagattcaagagttgatt
tgtctggagttgaatcttcccgtcataaacctacctgtccccggacaaaccggttctctt
gcccagaatggtggaaacacatcaaacactgaagcaactgcaagcgagtcaagagaaaag
gaaaatggtggtggaaatgatgctgcatctgatgcgcagggaggaactgacactgccaac
caatcccagttatatcaagattcatctatcttttatcattttagagatatgcagaggagg
caggttgagttcatcaagaaaagagtgctcctcttggaaaaagggctgaatgcagagtac
cagaaagagtacttcggtgacacgaaggcaawtgaaatgacaagtgaagatattgataat
gaatccaaggtttcaaatgtgccaggtcctagctctgtggagactgatattcaaaagatg
gatcagttgcctcaagtagatccaatttcttcagaagaaaattctgctgcttttgatgac
aatcctgatagattggaattaagccggctttacaacgagatgtgcaaggttgtggatgta
aattgcagagagctggtgcatgctccctctgggagccaccatgtcgcttctgacttgaaa
aataacctcctccctcttgagaagattttcgaagacgtgaaccgaatcttttctccacag
ccgaaccccactgaagaacaaccaacatcggattctggtccgcaacttgcacatggtgaa
tcaccgaacaatagagcatcatcagttgcagattcagggagcgaaagggctgccgttgcc
acaaacatggaggtagattctgcaacagaatccaaacctcaaaaagaaagcgacaagttg
atgcaggtagacctcagtcccgcagaagaaaaacctgagccatctgctcatgttccagct
tctgaagatccatgcctcgctcagccggaatgcacacctctaccagataaaactagcatc
tacgaaatggaagttgaggcaagcaaggacaccgctgcaccagaagaacacaacggggaa
ggtaagtcgggggtgatcgtgttagacgactag

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