Momordica charantia (bitter melon): 111013478
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Entry
111013478 CDS
T05045
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
mcha03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111013478
09123 Folding, sorting and degradation
03018 RNA degradation
111013478
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111013478
03041 Spliceosome [BR:
mcha03041
]
111013478
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111013478
mRNA degradation factors
5'-3' decay
Lsm complex
111013478
Spliceosome [BR:
mcha03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111013478
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
111013478
NCBI-ProteinID:
XP_022143617
UniProt:
A0A6J1CRC5
LinkDB
All DBs
Position
Unknown
AA seq
149 aa
AA seq
DB search
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD
GSKASSGGRGKGGPGGKPGANRVGGRGRG
NT seq
450 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctttcgctcctaaagactgctcaagggcatccaatgttagtggaactgaaa
aacggggagacttacaatggccacttggttaattgtgatacatggatgaacattcatctc
cgggaagtcatctgcacttctaaagatggtgaccggttttggcgaatgcctgaatgttat
atccgcggtaatacaatcaagtatttgagagttcctgatgaggttattgataaagttcag
gaagaaaccaaaagccgtgcagataggaaaccactgggcatagggcgtggtagaggaaga
ggccgtgaagatggtcctggtggaagaccagccaaaggaatggggcgaggctttgatgat
ggttctaaagcttcatctggaggccgtggaaagggtggcccaggtggaaaacccggtgcc
aacagagttggagggagaggccgaggatga
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