Momordica charantia (bitter melon): 111015708
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Entry
111015708 CDS
T05045
Name
(RefSeq) CCR4-NOT transcription complex subunit 1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111015708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111015708
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111015708
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111015708
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
111015708
NCBI-ProteinID:
XP_022146508
UniProt:
A0A6J1CYS0
LinkDB
All DBs
Position
Unknown
AA seq
2409 aa
AA seq
DB search
MLKFSTATSSQIRFLLHSLTESNTESILKELYEFIDCGIEGSFILLRTCLDHFTSHGTDL
ENLQLRLVISSVFKHLLDRPNFSTIFCESLKSRDINQGILENISNLLNLSMCERIGVGLA
VSDSENLDARMCGKNFCIRQIEELCANAVSVDSTHQIQDIIMFLQRSEGLSKHLDSFMQM
LSLVQLKDVTDFVLSPLLSDELREEKFLRNVNLSHESLDNDFDSILAEMEKEMSMGDIMK
ELGYGCTVNATQCKEILSLFLPLTEITISKILGMIARNHMGPEDSRNIYTTFSLALGCSS
LSDLPSLNSWDVDVLIDTVKQLAPGVDWIRVMENLDHEGFYIPNEEAFSFFMSVYRRACQ
EAFPLHTICGSVWKNMEGQISFLKHAVLAPPEIFTFAHSGRQLAYIDGVHGHKLQLGLTN
HAWMCLDLLDILCELAERGHARSVQSILEFPLKNWPELLLLGMAHTNTAYNLLQYEVSFS
VFPLILRNPLGSGLVLQLWHINPNLVLRGFVDAQNSDPDCIVRIVDICQELKILLSVLDT
IPYSCSLRLAAIASRKEFLDLEKWLSNSLNTCKDVFFEECLKFLKGIQYGGSQDFSTKPF
YPSNAFSNIYLDTASTFLKVLRSNVGTIASTQLSEEMEKLHVAVLESNPKLQIGGASDAP
ASDGYTDDIEAEANSYFQQMFSGHLTIEAMVQMLARFKESSVKREQSIFECMIANVFEEY
RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGVALRVVLDALRKPADSKMFVFGTKAVE
QFVDRLIEWPQYCNHILQISHLRSTHAELVSFIEQALLRISAGHSDSEGNIHASAIHHHG
SNQATSGNVELNSSSIIQPGQQLSSTIQLQQKHESASDDRLKVTATSATDVKPVLSSVGQ
PSIQSIGDASTNQKVQNTINTPMLSSSPGFVRPSRGAASTRFGSALNIETLVAAAEKRET
PIEAPASDVQDKISFMINNISLTNLEAKAKEFTEILKEQFYPWFAQYMVMKRASIEPNFH
DTYLKFLDKVNSKALSKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGR
NQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMGILGLLAE
IYSMPNLKMNLKFDIEVLFKNLSVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQTQM
VPEVKSSIMSSLNQVDLPLEVAASSNSGNHTHLLSQYATPLHLSSGTLMEDEKLAALGLS
DQLPSAQGLLQAAPSPSPFSTSQLPAGIPNIGSLVVINQKLNSLGLHLHFQRSVPMAMDR
AVKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIFNAAHLMVASLAGCLAHVTCKE
PLRGSISSQLRSSLQGLGVASDLLEQAVQLVTNDNLDLGCAIIEQAATDKAIQTIDGEIA
QQLSLRRKHRDGVNPTFFDTGMYAQGPLGVVPEALRPKPGHLSVSQQRVYEDFVRLPLQN
QSSQAQNSTGSSITPSGTGLSSQFGLSTGQLNSGYTSGPVNTGLEGVSRALDETIESASV
PQXSATTGHIAADGVGVRGQENDIVIASFPSAASAPELHAVDNSDNIKELGSSSQPLPSP
ITTDRLATTISEPSLTTRDALDKFQVISQKLEALVSNEARETEFQGVIAEVPEIILRCIS
RDEAALAVAQKVFKVLYDNASNTFHVGAHITILIAIRDVCKLVVKELTSWVIYSEEERKY
NKDITLGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQALAVEESSVISELHNL
VDALAKVAAKPGSPEYLQQLVEIIKNPAASAAAISGVNVGKEDKAKLARDKKAPGHSISN
REDSSILESEPDPAGFRDQVSMLFAEWYRICELPGANEAASNHFILQLHQNGLLKGDDMT
DRFFRLLTELSVAHCLSSEVINSGALQSPQQVQNLSFLAIDIYAKLVFSILKGSGKTALL
SRILSVTVRFIQKDAEEKKASFNPRPYFRLFINWLPDLGSLEPIVDGANFQILTAFANAF
HALHPLKIPAFSYAWLELVSHRSFMPKMLTGNSQKGWPYIQRLLVDMFQFMEPFLRNAEL
GPPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPD
PSTPNLKIDLLAEINQSPRILSEVDGALKSKQMKADVDEFLKTRQQGSSFLVDLKQKLLL
PSSEAASAGTRYNVPLINSLVLYVGMQAIQQLQARSSHAQSTGNTVTLAVFLVGAALDIF
QTLIIELDTEGRYLFLNAVANQLRYPNTHTHYFSFVLLYLFAESNQEIIQEQITRVLLER
LIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPDIERLFESVSRSCGGPKSADENMV
QNWVPDSAH
NT seq
7230 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaattttcractgcaacgtcatctcagattcgcttcctcctccatagcttgact
gaatctaatactgaatctatcctcaaggagctctatgagtttattgactgtggaattgaa
ggaagcttcatactgctcagaacttgtttggatcatttcactagtcatggaacagatttg
gaaaacctgcagttacgactagttatttcttcagttttcaagcatcttttggacagacct
aattttagtacaatattttgtgagtccctaaaaagtagagatatcaaccaaggtattctg
gagaacatctcgaatctgttaaacttgtccatgtgtgaaagaattggagttggtcttgct
gtttcagattctgaaaatcttgatgcaaggatgtgcgggaagaacttctgcattcgtcag
attgaggagctttgtgctaatgctgtttctgtggattccactcaccaaattcaggatatt
attatgttcctccagcggtctgaggggctctcgaagcatttagattccttcatgcaaatg
ctatctctggtgcagttgaaagatgttacagactttgttttgtcaccactgctttcagat
gaattgcgagaggagaaatttttaaggaatgtaaacctgtcacatgagtcccttgataat
gattttgattccatcttagctgaaatggagaaggaaatgagcatgggagatataatgaag
gaactgggttatggatgcactgtcaatgcgacgcaatgtaaagagattttgtccctattt
ttgccactgacagagattactatctctaagatacttggcatgattgctcgcaatcatatg
ggtcctgaggacagtcgaaatatatatacaacttttagtctagctttaggttgcagcagt
ctgtctgatctaccatccttgaactcatgggatgtggatgtcctcatagacacagtgaag
caacttgcacccggtgttgactggataagagtaatggaaaatctggatcatgagggtttt
tacattcctaatgaggaagcattctcatttttcatgtctgtatatagacgcgcatgtcag
gaggcatttcctcttcatactatttgtgggtccgtttggaagaatatggagggtcaaatt
tcttttcttaaacatgccgtgttggcaccacctgaaatatttacatttgctcactctgga
agacagctggcttatattgatggagtgcatggccataagcttcaacttggacttacaaat
catgcatggatgtgtcttgatcttttggatatactgtgtgaactagctgagagaggtcat
gctagatctgtgcaatcaattcttgagtttcctcttaaaaactggcctgagctattgcta
cttgggatggcacatacaaacactgcatacaatttgcttcagtatgaagtttctttttcc
gtcttcccattgatattaagaaatcctcttggtagtggtttggtccttcagctatggcat
attaaccccaatctggtgttacggggatttgtggatgctcaaaacagtgatcctgattgc
atagttaggattgttgacatctgccaagaattaaagatacttttgtcagtattagatacg
attccttattcctgcagtctcagattagcagccattgcttcacggaaggaatttttagac
cttgagaagtggttgagtaatagtttgaacacgtgcaaagatgtatttttcgaggaatgt
ctcaagtttttgaaagggattcaatatgggggatctcaagatttttcaaccaaacctttc
tatccttctaatgccttctcaaatatttatttggacactgcttctactttcttgaaggtt
cttagatctaatgtgggtactattgcttctactcaactatccgaggaaatggagaagttg
catgttgcagttctggaatcgaacccaaagctgcaaattggtggggcctcagatgcaccc
gcttcagatggatatacagatgacattgaggctgaagctaactcttacttccaacaaatg
ttctccggtcacttgactattgaagcaatggttcaaatgcttgctcgattcaaggagtct
tcagtaaaaagggaacaatcaatattcgaatgcatgattgcgaatgtttttgaggagtac
agattcttcccaaaatatcctgaaagacagctgaaaattgcggcagttctctttggctct
gttattaagcaccagcttgtaactcaccttacgcttggggttgcactgcgtgttgtcctt
gatgcacttcgtaaaccagcagattcaaaaatgtttgtgtttggtactaaggctgtagag
cagttcgtggatcgtttgattgagtggccacagtactgcaatcatattctgcaaatatca
catctgcgaagcactcatgcagaactcgtctctttcattgagcaggctcttttgagaatt
tctgcgggccactctgattcagagggaaatatccatgcttctgccatccatcaccatggt
tccaatcaagctacttcaggaaatgtggagttaaatagttctagcataattcaacctggt
cagcaactttcttcgacaattcagcttcaacagaaacatgaaagtgccagtgatgatcga
cttaaagtcactgcaacatcagctactgatgtaaagccagttttatcttcggtgggtcaa
ccttcaattcaatccataggtgatgcttctaccaatcaaaaggtgcagaatacaatcaat
actccaatgttgtcttcttcccctggttttgtccgtccttcacgaggggctgcttctacc
aggtttggttcagcwttgaatattgaaacacttgttgctgcggctgagaaaagagaaact
cctattgaggctccagcatcagatgtgcaagacaagatttcatttatgattaataatatt
tcactcactaatcttgaagccaaagcaaaagaatttactgagattttgaaggagcagttt
tatccttggtttgctcagtatatggtcatgaagagggctagcattgagcctaattttcat
gacacgtacttgaagtttctggacaaagttaattcaaaagctttaagtaaagagatcgtt
caagctacttacgagaactgcaaggttctattaggatcagagctcataaaatcaagttca
gaagaacgttcattgctaaagaatttgggaagctggcttggtaaactgacaattggtagg
aatcaagtgctgagagctcgtgaaatagatccaaaatctttgataattgaggcatatgag
aaggggctaatgattgcagtaataccatttacttccaagattcttgaaccatgtcaaagt
agtttagcctatcaacctccaaatccttggacaatggggattcttggactgctggcagag
atttattcaatgcctaatttaaaaatgaacctgaagtttgacattgaggttctattcaag
aatctcagtgtggatatgaaagacataacgccaacctctcttctcaaagatcgtaagaga
gaaattgaaggtaatcctgatttttcaaacaaggatgttggagcatcccagacgcagatg
gtaccagaagtgaagtccagcataatgtcttctttaaatcaagtggatcttccactggag
gttgcagcatcatcgaattctgggaatcatactcatcttttatcccagtatgctaccccg
cttcatctttcttctggcacattaatggaggatgaaaagcttgctgcgctgggcttgtct
gatcaacttccttctgcccaaggactcttacaagctgcaccgtccccatcacccttttca
accagtcagcttcctgcaggtatccctaatattggaagtcttgttgtgatcaaccagaag
ctaaatagtttgggcttgcatctccactttcagagatccgttccaatggcaatggataga
gctgtgaaagagattgtttctggtattgtgcaacgtagtgtctctatagctacccaaacg
acaaaggaacttgttttgaaggattatgccatggagtcrgatgagacccgaatatttaat
gcagcacatttgatggtagctagtctagctggatgtctagcacatgtgacttgcaaggaa
cccttgcgaggttcaatatcaagtcaactcagaagttctcttcagggattgggtgttgcc
agtgatctgcttgagcaggctgttcagcttgttacaaatgataaccttgatcttggttgt
gccataattgaacaggccgctacagataaggcaatacagaccattgatggtgaaatagct
caacaactctctttaagaaggaagcatagagatggtgttaacccgaccttttttgacact
ggcatgtatgcacaaggacctcttggtgttgtgccggaagctctccgtcccaaaccggga
catctttcagtttcacaacagcgagtttatgaggattttgttaggcttcccttgcaaaat
caaagtagccaagctcaaaactctactggttcttcaattacacctagtggtactggtttg
agtagtcaatttggtttgtcaacgggacaactgaactctggatacacatctggacctgtt
aatactggacttgaaggagtctctcgggctctggatgaaactatagaatctgcctctgtg
ccccaacyaagtgcaactacaggacatattgctgctgatggtgttggtgtacgcggccag
gaaaatgatatagtaattgcttctttcccgtcggctgcttcagcccctgagctacatgca
gttgataactctgacaatattaaggaacttggatcctcttcccaaccattgccctcacct
atcactactgatcgccttgcaactactatatctgaaccttcacttaccaccagagatgca
ttggataaattccaagttatttcacaaaagttggaggctttggttagtaatgaggctcga
gaaactgaatttcagggtgtaattgcggaggttcctgagatcatactgagatgcataagt
cgggatgaagctgcccttgctgtggctcaaaaggtgttcaaagttttatatgacaacgca
tcaaacacttttcatgttggtgcccatattaccattctgattgccattcgcgatgtttgc
aagctagttgtaaaggaacttactagctgggtgatttactctgaggaagaacgtaagtac
aacaaggacattactcttggtcttattcgcagtgaattactaaatcttgcagagtacaat
gttcatatggcgaaactaattgatggagggaggaataaggccgcaacggagtttgccata
tccctcctccaagcattggccgtggaagaatcaagtgttatttcagaacttcacaatctt
gttgatgcattagccaaggttgctgcaaaacctggatctcctgagtatttgcaacagctg
gttgagataatcaagaatcctgccgctagtgcggctgctatatctggggttaatgttggg
aaagaggacaaggctaaacttgccagagacaaaaaggctcctggacattccatatcaaac
agagaagattctagtatcctcgagtctgaaccagatccagctggttttcgtgatcaggtg
tcaatgctatttgctgaatggtaccgaatatgtgagctgcctggtgctaatgaagcagca
tctaaccatttcatattacaattacatcagaatggacttctgaaaggggatgatatgact
gatcgttttttccgtcttctcacggaactttctgtggctcattgcttatcatctgaagta
attaactcgggtgcattacaatcaccacagcaagtacagaatttatctttccttgcaatt
gacatttatgccaagcttgtattttccatcttgaaggggtctggtaaaactgctctctta
tcaaggattctgtcagtgacagtaagattcattcagaaagatgctgaggagaagaaagca
tcatttaatccaagaccgtattttagattgtttattaactggcttcctgaccttgggtct
ctagaacctattgttgatggtgccaactttcagatattgacagcttttgctaatgcattt
catgcgttgcaccctcttaagattccagcattcagttatgcttggcttgagttggttagt
catagaagtttcatgccaaagatgcttactgggaatagtcagaagggttggccttacatc
cagcgtttgctggtagacatgtttcaattcatggagccatttttgcggaatgctgaactt
ggaccaccggttcattttctatataaaggcactctaagggtgttgctagtgttacttcat
gatttccctgagttcctatgtgactatcattttactttctgtgatgtgattcctcctagc
tgcattcagatgcggaatatcatccttagtgcgtttcctcgtaacatgagacttccagat
ccatctactcccaacttgaagattgacttgcttgcggaaatcaatcaatcccctcgcatt
ctctcggaggtggatggagctcttaaatcaaagcagatgaaggccgatgtggatgaattt
ctcaagacgaggcaacagggatcctcgtttttggttgatttgaagcagaaattgctactt
ccttcaagtgaagctgcttctgctgggacccgttacaatgtgcctttgatcaattccctt
gtactttacgttgggatgcaggccatacagcagcttcaagcaagaagttctcatgcgcaa
tcaaccggtaatactgttacattagcagtattcttggtgggagctgctctggacattttc
cagactctgattattgagttggatactgaagggcgctacctcttcctcaatgctgttgca
aaccaacttcgttatccaaatacccacacacattacttttcttttgtcctcttgtacttg
tttgcggaatcaaatcaggaaattatccaggagcagataacaagagtgttgttggaacgt
ctcattgttaatcgacctcatccatggggtctactgattacattcatcgaacttattaag
aatccaagatataacttctggaaccgatccttcataagatgtgcaccagatattgaaaga
ctattcgagtcggtctccagatcctgcggtggccccaaatccgcagatgagaacatggtt
cagaattgggtacctgacagcgctcactaa
DBGET
integrated database retrieval system
