Momordica charantia (bitter melon): 111024858
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Entry
111024858 CDS
T05045
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
mcha
Momordica charantia (bitter melon)
Pathway
mcha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mcha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111024858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mcha03019
]
111024858
Messenger RNA biogenesis [BR:
mcha03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
111024858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_11
TPR_8
TPR_16
TPR_17
TPR_14
TPR_CcmH_CycH
TPR_9
TPR_19
TPR_12
TPR_7
BTAD
TPR_10
TPR_NPHP3
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
111024858
NCBI-ProteinID:
XP_022158379
UniProt:
A0A6J1DZ84
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MEEIAVEKEHVGEPGTPYITTIQLQEAVDAHPDDPSSHLKLGIFLWDNGRSHDKAAAADH
FLKSAKLDNRNGAAFKYLGHYYATFSVDIERALKCYQRAVSLDAEDFQSGEALCNLLHHE
GKESLEVAICKEASAKSPRAFWAFRRLGYLQVYEKKWAEAVLSLQHAIRGYPSCADLWEA
LGLAYQRLGRFTAAIKSYARAIEIEEDRVLAWVESGNIFLTLGSFKKGVEHFQQALEISP
KSITAQFGLSSGLLGLAKECINKGAFKWASFLSEEASKVARGSTHLAGNLSCIWKLLGDI
QLTYAKCYPWMGDDCGVGMSSESFRSSVLSWKQTCSLALFSARCSYQQALHLAPWEANIY
TDIAITLDLISSSSNDSGSGFNSWQISEKMTLGALMLEGDNHEFWVAMGCLSNQDALKQH
AYIRALQLDGSLAVAWAYLGKLYRNRGEKQLAKEAFDYARSIDPSLAIPWAGMSADLNIR
ESTSDEAFESCLRAAQILPVAEFQIGLARLSLQAGHLSSPQVFGAIRQAVQLAPCYPESH
NLNGLAFEAHLDYQSAVAAYRLARLSISYFSNRVPRSHVRDISINLARSLCMVGNFFEAS
QECENLTKEGMLDVQGLQVYAFSLWQFGKNEQALTAVRTLAAGISTMERTCVAASVSFIC
RLLYTISGLDPAISSIMKMPKDFFQSSKMSFVVFAIHAIDWSDRLEPIVLSSRSCLRSHE
EITKMHFLIALSKLIKHRSDNCLGFRSGVMHLRKALHAYPNSSLIRNLLGYLLLSNEERD
DSHSATRCCNMLYGFDKQNGGLKSAYEIHGAGAVACYTIGTSHPRFSFPTCSYQCQNGIG
IIRELQKCLHQEPWNYDARYLLILNFLQKAREERFPYHLRVTIERLISVAFSNELYLKKD
TSYQYKKFQLLLCASEISFQGGSQIKCINYAEAASSISLPDNYLFCAHLLLCRAYAAEND
SNNLRREFIKCLDLQTDNYLGWVCLKFIASRYELHAESNILERSFKECLKERENLQHMSM
PMFSMVDGLTSFWSQDFMVAEKFFAQACSLGCDDVCHLLCHGVTCMELARQLCSSHFLML
AVNSLLKAQVISVVPVPIVSIMLAQAEGSLGLKEKWESNLRFEWFSWPPDMRSAELLFQM
HLFAKQSKVGSDQLGVESRQPPLRWVLRAIHVNPSCMRYWKVLQSLWKEI
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaagagattgcagtagaaaaagaacatgtaggagaaccggggaccccttatattacg
acaatacaattgcaagaagcagttgacgctcatccagacgacccctcttcccatttgaaa
ctcgggattttcctgtgggacaatggacgaagccacgataaggcggctgcggcggaccat
ttcctgaaatcagccaagttagacaatcggaatggtgccgctttcaaatatttagggcat
tattacgccacattttctgtcgatatcgagagggctcttaagtgctaccagagagctgtc
agtctcgatgctgaagattttcaatctggggaagccttgtgcaatctgttacaccatgaa
ggaaaggaaagtctagaggttgctatatgcaaagaggcttctgctaagtcacccagggcc
ttctgggctttccggaggttgggctacttgcaggtttatgaaaagaaatgggctgaagct
gttctaagtcttcagcatgccattcgaggatatccttcttgtgctgatctgtgggaagcc
ctgggtcttgcgtatcagcgacttggcagatttactgctgcaattaagtcttatgctcgg
gccattgaaattgaagaagatagagttcttgcttgggttgagagtggaaatattttcttg
acgcttggttcgttcaagaaaggagttgaacactttcagcaagctctagagatatcacct
aaaagtattactgcacaatttgggctctcttcagggcttcttggtttggcaaaggaatgc
attaataaaggggcgtttaaatgggcatcctttttgtcagaggaagcatctaaagttgca
agaggaagtactcatttagctggaaacttgtcgtgtatttggaagttgcttggagatatt
cagcttacgtatgcaaaatgttatccatggatgggagatgactgtggagtaggaatgagt
tcagaatcttttagatcttccgtcctctcctggaaacagacctgcagtttggctttattt
tctgccagatgttcctaccagcaagctctgcacttggctccatgggaagctaatatttac
acagatattgctatcactttagatcttatttcctcctcgagcaatgactctggatctgga
ttcaattcctggcagatatctgaaaagatgacattaggggccttgatgctcgagggtgac
aatcatgaattttgggtggcaatgggatgcctctctaaccaggatgcattgaagcaacat
gcttacataagggcattgcagttagacggatctctagctgtagcctgggcttatcttggg
aagctatacaggaataggggtgagaagcaattggcaaaggaggcatttgattacgccaga
agtatagatccttcgctagcgataccctgggctggcatgtcagctgatttgaacattagg
gagtccacatcagatgaagcgtttgaaagctgtttgagagctgctcaaatactacctgtg
gcggaattccaaattggtcttgccaggctttctctgcaggcaggccatctttcatctcca
caggtgtttggagccatacgtcaggctgttcaacttgcaccttgttacccggaatcccat
aatttgaatggactagcttttgaggcacacttagactatcaatctgctgttgctgcttat
cgtctagcacgcctctcaatcagctatttttcaaatagggttccaaggtctcatgtcaga
gatatatcaatcaacttagccagatcactctgcatggtgggtaatttctttgaagcttcg
caggaatgtgaaaatttgactaaagaaggcatgctcgatgttcaaggtttgcaggtatat
gctttttctctatggcaatttggaaaaaatgaacaggcccttactgctgtgagaaccctt
gctgctggcatctctaccatggaaagaacatgcgttgcagcatctgttagtttcatatgt
agattgttgtatacaatatccggattggatccagcaattagcagtatcatgaagatgcca
aaagattttttccagagttcaaaaatgagctttgtagtgtttgctattcatgctattgat
tggagtgatcggcttgagcctattgttttaagcagccgttcgtgtctccggtctcatgaa
gagatcactaaaatgcactttttgattgctctctctaagttgatcaaacatcgatccgat
aactgcctaggatttcggagtggagtgatgcatctcagaaaagctcttcatgcatacccc
aatagtagtttgataaggaacctgcttggttatcttttgttatccaacgaagaaagagat
gacagtcacagtgctactaggtgctgcaacatgttgtatggttttgacaaacaaaatgga
ggtctgaaatctgcatatgaaattcatggtgctggagcagttgcctgctatacaattggc
accagtcatccgcgattttctttcccaacatgttcatatcagtgccagaacgggattggg
atcatccgagaacttcagaagtgcttgcatcaagagccatggaactatgatgctcgatat
cttcttatactgaactttctgcagaaggcacgtgaagaaagattcccttatcatctacgt
gtgacgattgagcggctaatctcggttgccttttccaatgaattatatttgaaaaaagat
acgtcctatcaatataaaaagtttcagctgttactttgtgcatctgagatcagtttccaa
ggcggtagccaaattaaatgcattaactacgcggaagctgcgtcgtctatttcacttcct
gataattatctattttgtgcacacttgttactatgccgagcctatgctgcagaaaatgat
tctaacaacctccgcagagagttcataaaatgtttggacttacagacagataactatctt
ggttgggtatgtcttaaattcattgcatctcgatatgagcttcatgctgaatccaatatc
ttagaacgtagttttaaggaatgcttgaaagagagagagaatctacaacacatgtcaatg
cccatgtttagtatggtggatggtttaacatccttttggagccaggattttatggttgct
gagaagttttttgctcaagcttgttcgttgggatgcgatgatgtctgtcacctcctctgt
catggtgtaacctgcatggaacttgcgaggcagctttgcagttctcatttcttgatgctg
gctgtgaacagtctcctcaaagctcaagtaatttctgttgttccagtacctattgtatcg
atcatgctggctcaagcagaagggagccttggcttgaaagaaaagtgggagtcaaacctt
cgtttcgaatggttctcgtggccaccagatatgaggtctgcagagctgttgtttcaaatg
catttgtttgcaaaacagtcgaaagttgggtctgatcaattgggcgtcgagtcacgtcag
cctcctctgagatgggttcttcgtgcaatccacgtaaacccttcttgtatgagatactgg
aaggtgttgcagagcttgtggaaggagatctga
DBGET
integrated database retrieval system
